Spg018842 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018842
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmajor latex allergen Hev b 5-like
Locationscaffold3: 21655542 .. 21656675 (-)
RNA-Seq ExpressionSpg018842
SyntenySpg018842
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATAATATTATTATTAAAAAAAAAAAAAAAAAAAAAAAAAAGACATGCTATGATAGTATATAAACATTTGATTGGGTTCTAAACCTTTGCCCACCACACCAATTACAACTCTCAATCTCGATCTGATCTCATTTTTCTTTCTTCTCTTCTTTTGCTCTTCCACTCTTTTTTTTTCTTTCCCTACAAGAGGGAGAGAAGTTCAATTTTTCATCCTTTTTCTTCCTCGGTTGTTCTTCCATATCATGGGTGCTTGTGCTACCAAACCTAAGGTCAAGGCCGACGATGCCTTCGTCCCTGCACCAGTACCTGTTGACGACATCGTGAAGAACACCGAGGAAGTTAAGGTTGTGGAAGAGGAAAAGAAGGATGATCTAAACAATAATGAAAAGAAGAAGGAAGAAGATACCGAGAAGGTCGTTCTCGAGGATGAGAAGTCCCAATCTCTCGCCTCCTTGCTCGTTGTGGTATACCCTAATCTTTTATCTTCAATTTAAGTATATAATAACTTTTTTATAAAAACGAAATGTGTTTAAAATTCTAAACCATTTTTATACAAAATGTTTATAAAAAAATGCATTCCTGAAAACCACTTAAACTAAAAGGTAGGTAGGTATTCCAAACGGATCCTAAATGTTGGTATCGCCTTTTACAGAAGGGAGCTGCTCCGGTGGTGGAAGTTTCGAGTGTGACAAAGGAAGAGGAGAAGTCGAAGGCTGAGGAGAAGCCAAAGGCGGAGCCACCGAAGGAAGCGGAAGCGGAAGCGACGGCGGCGGCGGGAAGTGCAGCAGCGGAAGAAGTGAAGAAGAGCGAAGAGAAAGCAACGGAAAAGGATGAGAAGAGCGTATGAAATTAAATGAAGGATACGCTCTTTCATTAATTTTCGCTATTTATTATTCAATATGCTGTGCAAAGATTGGTAACCTTTTTTTAAGGTGTGGGTGGTCTGTGTTGCCTTTATCAAACAAAATTCAGTGATTAAAATTTATCATGATTCTATTTATTTTTATTTTTCTCTAAATTTAAAAATCTATATGCTTTGTATTTAGTGTTCCATATTCTTGGATTTGCTAACTCGTTTTTCCCAATGGCTAGGGAAAGGAACTGAAATCTTTAATTTTATTTCTTCAAATTAC

mRNA sequence

ATGGGTGCTTGTGCTACCAAACCTAAGGTCAAGGCCGACGATGCCTTCGTCCCTGCACCAGTACCTGTTGACGACATCGTGAAGAACACCGAGGAAGTTAAGGTTGTGGAAGAGGAAAAGAAGGATGATCTAAACAATAATGAAAAGAAGAAGGAAGAAGATACCGAGAAGGTCGTTCTCGAGGATGAGAAGTCCCAATCTCTCGCCTCCTTGCTCGTTGTGAAGGGAGCTGCTCCGGTGGTGGAAGTTTCGAGTGTGACAAAGGAAGAGGAGAAGTCGAAGGCTGAGGAGAAGCCAAAGGCGGAGCCACCGAAGGAAGCGGAAGCGGAAGCGACGGCGGCGGCGGGAAGTGCAGCAGCGGAAGAAGTGAAGAAGAGCGAAGAGAAAGCAACGGAAAAGGATGAGAAGAGCGTATGA

Coding sequence (CDS)

ATGGGTGCTTGTGCTACCAAACCTAAGGTCAAGGCCGACGATGCCTTCGTCCCTGCACCAGTACCTGTTGACGACATCGTGAAGAACACCGAGGAAGTTAAGGTTGTGGAAGAGGAAAAGAAGGATGATCTAAACAATAATGAAAAGAAGAAGGAAGAAGATACCGAGAAGGTCGTTCTCGAGGATGAGAAGTCCCAATCTCTCGCCTCCTTGCTCGTTGTGAAGGGAGCTGCTCCGGTGGTGGAAGTTTCGAGTGTGACAAAGGAAGAGGAGAAGTCGAAGGCTGAGGAGAAGCCAAAGGCGGAGCCACCGAAGGAAGCGGAAGCGGAAGCGACGGCGGCGGCGGGAAGTGCAGCAGCGGAAGAAGTGAAGAAGAGCGAAGAGAAAGCAACGGAAAAGGATGAGAAGAGCGTATGA

Protein sequence

MGACATKPKVKADDAFVPAPVPVDDIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKVVLEDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGSAAAEEVKKSEEKATEKDEKSV
Homology
BLAST of Spg018842 vs. NCBI nr
Match: XP_038886854.1 (uncharacterized protein LOC120077074 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 9.0e-26
Identity = 95/140 (67.86%), Postives = 107/140 (76.43%), Query Frame = 0

Query: 1   MGACATKPKVKADDAFV-PAPVPVD-DIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKV 60
           MGACATKPKVKADD  V PAP PVD D+VKNTEEV+VVEEEKK  ++ N++KK+ED EKV
Sbjct: 1   MGACATKPKVKADDMLVIPAPEPVDHDMVKNTEEVQVVEEEKK--IDQNDEKKKEDNEKV 60

Query: 61  VLEDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGSA 120
           V+++EK  SLASLLV K AAPV+EVSS T       AEEKPKAEPPKEA A  TAAA   
Sbjct: 61  VVQEEKPPSLASLLVEKEAAPVMEVSSET------TAEEKPKAEPPKEAVAPTTAAA--- 120

Query: 121 AAEEVKKSEEKATEKDEKSV 139
              E KKSEEK  EK+EKSV
Sbjct: 121 ---EEKKSEEKPKEKEEKSV 126

BLAST of Spg018842 vs. NCBI nr
Match: XP_022157466.1 (salt stress root protein RS1-like [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19
Identity = 77/143 (53.85%), Postives = 101/143 (70.63%), Query Frame = 0

Query: 1   MGACATKPKVKADDAFVPAPVP-----VDDIVKNTEEVKVVEEEKKDDLNNNEKKKEEDT 60
           MGACATKPKVK D+ ++PAP P     ++ ++K+TEEVKVV+E+KK D   N+K K+EDT
Sbjct: 1   MGACATKPKVKEDEPYIPAPEPEPEPTLEIMMKSTEEVKVVQEDKKVD-GTNQKIKKEDT 60

Query: 61  EKVVLEDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAA 120
           +K+V+E+EK+ SL+SLLV K  AP VEV S TKEE+     E+ KAEPPK         A
Sbjct: 61  KKIVVEEEKAHSLSSLLVEKKEAPAVEVPSATKEEKLKPKVEEAKAEPPK--------VA 120

Query: 121 GSAAAEEVKKSEEKATEKDEKSV 139
              A E++KK ++KAT KDEKSV
Sbjct: 121 AVPAPEQIKKCDDKATGKDEKSV 134

BLAST of Spg018842 vs. NCBI nr
Match: XP_004139808.1 (microtubule-associated protein 1B isoform X1 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 84/140 (60.00%), Postives = 97/140 (69.29%), Query Frame = 0

Query: 1   MGACATKPKVKADD-AFVPAPVPVD-DIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKV 60
           MGACATKPKVKADD A +PAP P+D DIVKN EEVK VEEEKK D    ++KK+E+ EKV
Sbjct: 1   MGACATKPKVKADDLAAIPAPEPIDHDIVKNNEEVKFVEEEKKSD--QTDEKKKENNEKV 60

Query: 61  VLEDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGSA 120
           V++++K  SLASLLV K AAP VEVS + K EEK KA+E   A P  EA           
Sbjct: 61  VVKEKKPPSLASLLVEKEAAPAVEVSGIPKAEEKPKAKE--VAAPTIEA----------- 120

Query: 121 AAEEVKKSEEKATEKDEKSV 139
              E+KKSEEK  EKDEKSV
Sbjct: 121 ---ELKKSEEKPKEKDEKSV 122

BLAST of Spg018842 vs. NCBI nr
Match: XP_022931727.1 (patellin-1-like [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 8.2e-19
Identity = 82/137 (59.85%), Postives = 94/137 (68.61%), Query Frame = 0

Query: 1   MGACATKPKVKADDAFVPAPVPVDDIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKVVL 60
           MGACATKPK K D A +PAP PVDD+VKNTEEVKVVE+EK+ D   +EKKK +DTEKVV+
Sbjct: 1   MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVEDEKRVDDVIDEKKK-DDTEKVVV 60

Query: 61  EDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGSAAA 120
           E+ K  SL SLLV K A    EV SVTK EE          +PPKE       AA  A A
Sbjct: 61  EEAKPPSLDSLLVEKEA----EVPSVTKAEE----------QPPKE-------AAAVAGA 115

Query: 121 EEVKKSEEKATEKDEKS 138
           +EVKKSEEKA ++DEKS
Sbjct: 121 KEVKKSEEKAAKRDEKS 115

BLAST of Spg018842 vs. NCBI nr
Match: XP_008447176.1 (PREDICTED: major latex allergen Hev b 5-like [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 9.0e-18
Identity = 83/141 (58.87%), Postives = 95/141 (67.38%), Query Frame = 0

Query: 1   MGACATKPKVKADD-AFVPAPVPVD-DIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKV 60
           MGACATKPKVK DD A +PAP P+D DIVKN EE+KVVEEEKK D    ++KK+ED EKV
Sbjct: 1   MGACATKPKVKTDDLAAIPAPEPIDHDIVKNNEEIKVVEEEKKVD--QTDEKKKEDNEKV 60

Query: 61  VLEDEKSQSLASLLVVKGAA-PVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGS 120
           ++E EKS SLASLLV K  A PVVEVS + K +EK K EE     P  EAEA        
Sbjct: 61  IVEKEKSPSLASLLVEKETAPPVVEVSCIPKADEKPKVEE--VVAPTNEAEA-------- 120

Query: 121 AAAEEVKKSEEKATEKDEKSV 139
                 K+SEEK  EK+EKSV
Sbjct: 121 ------KESEEKPKEKNEKSV 123

BLAST of Spg018842 vs. ExPASy TrEMBL
Match: A0A6J1DY67 (salt stress root protein RS1-like OS=Momordica charantia OX=3673 GN=LOC111024158 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.1e-20
Identity = 77/143 (53.85%), Postives = 101/143 (70.63%), Query Frame = 0

Query: 1   MGACATKPKVKADDAFVPAPVP-----VDDIVKNTEEVKVVEEEKKDDLNNNEKKKEEDT 60
           MGACATKPKVK D+ ++PAP P     ++ ++K+TEEVKVV+E+KK D   N+K K+EDT
Sbjct: 1   MGACATKPKVKEDEPYIPAPEPEPEPTLEIMMKSTEEVKVVQEDKKVD-GTNQKIKKEDT 60

Query: 61  EKVVLEDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAA 120
           +K+V+E+EK+ SL+SLLV K  AP VEV S TKEE+     E+ KAEPPK         A
Sbjct: 61  KKIVVEEEKAHSLSSLLVEKKEAPAVEVPSATKEEKLKPKVEEAKAEPPK--------VA 120

Query: 121 GSAAAEEVKKSEEKATEKDEKSV 139
              A E++KK ++KAT KDEKSV
Sbjct: 121 AVPAPEQIKKCDDKATGKDEKSV 134

BLAST of Spg018842 vs. ExPASy TrEMBL
Match: A0A0A0K3E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230950 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 84/140 (60.00%), Postives = 97/140 (69.29%), Query Frame = 0

Query: 1   MGACATKPKVKADD-AFVPAPVPVD-DIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKV 60
           MGACATKPKVKADD A +PAP P+D DIVKN EEVK VEEEKK D    ++KK+E+ EKV
Sbjct: 1   MGACATKPKVKADDLAAIPAPEPIDHDIVKNNEEVKFVEEEKKSD--QTDEKKKENNEKV 60

Query: 61  VLEDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGSA 120
           V++++K  SLASLLV K AAP VEVS + K EEK KA+E   A P  EA           
Sbjct: 61  VVKEKKPPSLASLLVEKEAAPAVEVSGIPKAEEKPKAKE--VAAPTIEA----------- 120

Query: 121 AAEEVKKSEEKATEKDEKSV 139
              E+KKSEEK  EKDEKSV
Sbjct: 121 ---ELKKSEEKPKEKDEKSV 122

BLAST of Spg018842 vs. ExPASy TrEMBL
Match: A0A6J1EUI1 (patellin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111437877 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.9e-19
Identity = 82/137 (59.85%), Postives = 94/137 (68.61%), Query Frame = 0

Query: 1   MGACATKPKVKADDAFVPAPVPVDDIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKVVL 60
           MGACATKPK K D A +PAP PVDD+VKNTEEVKVVE+EK+ D   +EKKK +DTEKVV+
Sbjct: 1   MGACATKPKAKVDTAVIPAPEPVDDMVKNTEEVKVVEDEKRVDDVIDEKKK-DDTEKVVV 60

Query: 61  EDEKSQSLASLLVVKGAAPVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGSAAA 120
           E+ K  SL SLLV K A    EV SVTK EE          +PPKE       AA  A A
Sbjct: 61  EEAKPPSLDSLLVEKEA----EVPSVTKAEE----------QPPKE-------AAAVAGA 115

Query: 121 EEVKKSEEKATEKDEKS 138
           +EVKKSEEKA ++DEKS
Sbjct: 121 KEVKKSEEKAAKRDEKS 115

BLAST of Spg018842 vs. ExPASy TrEMBL
Match: A0A1S3BGT9 (major latex allergen Hev b 5-like OS=Cucumis melo OX=3656 GN=LOC103489688 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 83/141 (58.87%), Postives = 95/141 (67.38%), Query Frame = 0

Query: 1   MGACATKPKVKADD-AFVPAPVPVD-DIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKV 60
           MGACATKPKVK DD A +PAP P+D DIVKN EE+KVVEEEKK D    ++KK+ED EKV
Sbjct: 1   MGACATKPKVKTDDLAAIPAPEPIDHDIVKNNEEIKVVEEEKKVD--QTDEKKKEDNEKV 60

Query: 61  VLEDEKSQSLASLLVVKGAA-PVVEVSSVTKEEEKSKAEEKPKAEPPKEAEAEATAAAGS 120
           ++E EKS SLASLLV K  A PVVEVS + K +EK K EE     P  EAEA        
Sbjct: 61  IVEKEKSPSLASLLVEKETAPPVVEVSCIPKADEKPKVEE--VVAPTNEAEA-------- 120

Query: 121 AAAEEVKKSEEKATEKDEKSV 139
                 K+SEEK  EK+EKSV
Sbjct: 121 ------KESEEKPKEKNEKSV 123

BLAST of Spg018842 vs. ExPASy TrEMBL
Match: A0A5A7TGB5 (Major latex allergen Hev b 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00890 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MGACATKPKVKADD-AFVPAPVPVD-DIVKNTEEVKVVEEEKKDDLNNNEKKKEEDTEKV 60
          MGACATKPKVK DD A +PAP P+D DIVKN EE+KVVEEEKK D    ++KK+ED EKV
Sbjct: 1  MGACATKPKVKTDDLATIPAPEPIDHDIVKNNEEIKVVEEEKKVD--QTDEKKKEDNEKV 60

Query: 61 VLEDEKSQSLASLLV 74
          ++E EKS SLASLLV
Sbjct: 61 IVEKEKSPSLASLLV 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886854.19.0e-2667.86uncharacterized protein LOC120077074 [Benincasa hispida][more]
XP_022157466.11.3e-1953.85salt stress root protein RS1-like [Momordica charantia][more]
XP_004139808.12.1e-1960.00microtubule-associated protein 1B isoform X1 [Cucumis sativus][more]
XP_022931727.18.2e-1959.85patellin-1-like [Cucurbita moschata][more]
XP_008447176.19.0e-1858.87PREDICTED: major latex allergen Hev b 5-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DY676.1e-2053.85salt stress root protein RS1-like OS=Momordica charantia OX=3673 GN=LOC111024158... [more]
A0A0A0K3E61.0e-1960.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230950 PE=4 SV=1[more]
A0A6J1EUI13.9e-1959.85patellin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111437877 PE=4 SV=1[more]
A0A1S3BGT94.4e-1858.87major latex allergen Hev b 5-like OS=Cucumis melo OX=3656 GN=LOC103489688 PE=4 S... [more]
A0A5A7TGB51.2e-1270.67Major latex allergen Hev b 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018842.1Spg018842.1mRNA