Spg018816 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018816
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	non-specific lipid-transfer protein 2P-like
Location	scaffold3: 5475534 .. 5475851 (-)
RNA-Seq Expression	Spg018816
Synteny	Spg018816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAACTTCCGATCACAGTTGTTTGGCTCTTTGCGGTGGCAATAATGGTGGCACTTCTCACCGGAGCTGGTCTGGCGGGTGCACAAACAATTTCTGACCCTGCGCAGTTGGCTCCATGTTTCAATGCGTACCTATTGGATCAATATCCAAGTGGGGAATGTTGCAATAAGTTGAAGGAGCCACAAACATATTCGAATTGGTACTGTGTTGTCCTCAAATTTACAACTCGGGAGACTGATTTAGCTTCCTCTCGCGCAACTAAGATTGCTGAAGATTGTGGCATCACCTTTCAATCTGTGTGGGATTGTCCGTAG

mRNA sequence

ATGAATAAACTTCCGATCACAGTTGTTTGGCTCTTTGCGGTGGCAATAATGGTGGCACTTCTCACCGGAGCTGGTCTGGCGGGTGCACAAACAATTTCTGACCCTGCGCAGTTGGCTCCATGTTTCAATGCGTACCTATTGGATCAATATCCAAGTGGGGAATGTTGCAATAAGTTGAAGGAGCCACAAACATATTCGAATTGGTACTGTGTTGTCCTCAAATTTACAACTCGGGAGACTGATTTAGCTTCCTCTCGCGCAACTAAGATTGCTGAAGATTGTGGCATCACCTTTCAATCTGTGTGGGATTGTCCGTAG

Coding sequence (CDS)

ATGAATAAACTTCCGATCACAGTTGTTTGGCTCTTTGCGGTGGCAATAATGGTGGCACTTCTCACCGGAGCTGGTCTGGCGGGTGCACAAACAATTTCTGACCCTGCGCAGTTGGCTCCATGTTTCAATGCGTACCTATTGGATCAATATCCAAGTGGGGAATGTTGCAATAAGTTGAAGGAGCCACAAACATATTCGAATTGGTACTGTGTTGTCCTCAAATTTACAACTCGGGAGACTGATTTAGCTTCCTCTCGCGCAACTAAGATTGCTGAAGATTGTGGCATCACCTTTCAATCTGTGTGGGATTGTCCGTAG

Protein sequence

MNKLPITVVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKLKEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDCP

Homology

[Close]

BLAST of Spg018816 vs. NCBI nr
Match: XP_008444079.1 (PREDICTED: non-specific lipid-transfer protein 2P-like [Cucumis melo] >KAA0064163.1 non-specific lipid-transfer protein 2P-like [Cucumis melo var. makuwa] >TYK02866.1 non-specific lipid-transfer protein 2P-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-09
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MNKLPIT-VVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKL 60
           M   PIT VV +F VA  VALL G     AQT+ D +QL+ C  A+L    P+ ECC KL
Sbjct: 1   MKNFPITLVVCIFVVATTVALLNGPPPVAAQTVCDASQLSSCAPAFLFGGNPNQECCTKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDCP 106
           +  Q     YC        +  + S  A ++AE C ITF ++ DCP
Sbjct: 61  RAEQP---CYCEYFGDPNLQNFVNSDAARRVAEACNITFPTMADCP 103

[Close]

BLAST of Spg018816 vs. NCBI nr
Match: KAG7026200.1 (hypothetical protein SDJN02_12699, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 46/106 (43.40%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 1   MNKLPITVVWLFAVAIMVALLTGAGLAGAQTISDPAQLA-PCFNAYLLDQYPSGECCNKL 60
           M K  ITVV  F    MVA LTGA   GAQ   DP  LA PC  A+     PS  CCNKL
Sbjct: 1   MKKFGITVVCFF----MVAFLTGAHHVGAQQTCDPQLLAIPCGLAF-SGMRPSTRCCNKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDCP 106
           +E Q     YC  L     +  + S  A +IA DC IT  +  +CP
Sbjct: 61  REQQP---CYCAYLNNPDLKGFVDSPAARRIARDCNITIPTQAECP 98

[Close]

BLAST of Spg018816 vs. NCBI nr
Match: KAE8648021.1 (hypothetical protein Csa_005848 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 1   MNKLPIT-VVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKL 60
           M   PIT VV +F VA  VALL GA    AQ   DP+QL+ C  A+     PS  CCNKL
Sbjct: 1   MKNFPITIVVCIFVVATTVALLNGAPPVVAQVECDPSQLSSCTAAF-FGMTPSQTCCNKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDC 105
           +E Q     YC  +      + + SS A +IA+ C I+  +  DC
Sbjct: 61  REAQP---CYCEYINDPDLRSFVNSSAARRIAKSCNISLPTEADC 101

[Close]

BLAST of Spg018816 vs. NCBI nr
Match: XP_022143278.1 (non-specific lipid-transfer protein 2-like [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06
Identity = 43/100 (43.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 1   MNKLPITVVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKLK 60
           M  LPIT +WL  VAIM ALLTGA +A A T S P QL+ C  A      PS  CC+KL+
Sbjct: 1   MKTLPITGLWLLVVAIM-ALLTGAHVAEAVTCS-PLQLSSCAGAISSSTRPSASCCSKLR 60

Query: 61  EPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQS 101
           E +      C  LK       + S  A  +A  CG+ F S
Sbjct: 61  EQRP---CLCGYLKNPNLRPYVQSPGAKTVASACGVAFPS 95

[Close]

BLAST of Spg018816 vs. NCBI nr
Match: KAG6581747.1 (hypothetical protein SDJN03_21749, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06
Identity = 45/106 (42.45%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 1   MNKLPITVVWLFAVAIMVALLTGAGLAGAQTISDPAQLA-PCFNAYLLDQYPSGECCNKL 60
           M K  ITVV  F    +VA LTGA   GAQ   DP  LA PC  A+     PS  CCNKL
Sbjct: 1   MKKFGITVVCFF----VVAFLTGAHHVGAQQTCDPQLLAIPCGLAF-SGMRPSTRCCNKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDCP 106
           +E Q     YC  L     +  + S  A +IA DC IT  +  +CP
Sbjct: 61  REQQP---CYCAYLNNPDLKGFVDSPAARRIARDCNITIPTQAECP 98

[Close]

BLAST of Spg018816 vs. ExPASy TrEMBL
Match: A0A5A7V7R4 (Non-specific lipid-transfer protein 2P-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00730 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MNKLPIT-VVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKL 60
           M   PIT VV +F VA  VALL G     AQT+ D +QL+ C  A+L    P+ ECC KL
Sbjct: 1   MKNFPITLVVCIFVVATTVALLNGPPPVAAQTVCDASQLSSCAPAFLFGGNPNQECCTKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDCP 106
           +  Q     YC        +  + S  A ++AE C ITF ++ DCP
Sbjct: 61  RAEQP---CYCEYFGDPNLQNFVNSDAARRVAEACNITFPTMADCP 103

[Close]

BLAST of Spg018816 vs. ExPASy TrEMBL
Match: A0A1S3BAC3 (non-specific lipid-transfer protein 2P-like OS=Cucumis melo OX=3656 GN=LOC103487519 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MNKLPIT-VVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKL 60
           M   PIT VV +F VA  VALL G     AQT+ D +QL+ C  A+L    P+ ECC KL
Sbjct: 1   MKNFPITLVVCIFVVATTVALLNGPPPVAAQTVCDASQLSSCAPAFLFGGNPNQECCTKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDCP 106
           +  Q     YC        +  + S  A ++AE C ITF ++ DCP
Sbjct: 61  RAEQP---CYCEYFGDPNLQNFVNSDAARRVAEACNITFPTMADCP 103

[Close]

BLAST of Spg018816 vs. ExPASy TrEMBL
Match: A0A0A0KZL4 (Putative lipid transfer protein family protein OS=Cucumis sativus OX=3659 GN=Csa_4G146240 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 1   MNKLPIT-VVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKL 60
           M   PIT VV +F VA  VALL GA    AQ   DP+QL+ C  A+     PS  CCNKL
Sbjct: 1   MKNFPITIVVCIFVVATTVALLNGAPPVVAQVECDPSQLSSCTAAF-FGMTPSQTCCNKL 60

Query: 61  KEPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQSVWDC 105
           +E Q     YC  +      + + SS A +IA+ C I+  +  DC
Sbjct: 61  REAQP---CYCEYINDPDLRSFVNSSAARRIAKSCNISLPTEADC 101

[Close]

BLAST of Spg018816 vs. ExPASy TrEMBL
Match: A0A6J1CQB8 (non-specific lipid-transfer protein 2-like OS=Momordica charantia OX=3673 GN=LOC111013188 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 43/100 (43.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 1   MNKLPITVVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKLK 60
           M  LPIT +WL  VAIM ALLTGA +A A T S P QL+ C  A      PS  CC+KL+
Sbjct: 1   MKTLPITGLWLLVVAIM-ALLTGAHVAEAVTCS-PLQLSSCAGAISSSTRPSASCCSKLR 60

Query: 61  EPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQS 101
           E +      C  LK       + S  A  +A  CG+ F S
Sbjct: 61  EQRP---CLCGYLKNPNLRPYVQSPGAKTVASACGVAFPS 95

[Close]

BLAST of Spg018816 vs. ExPASy TrEMBL
Match: A0A6J1GTR0 (non-specific lipid-transfer protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111457455 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.5e-06
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 1   MNKLPITVVWLFAVAIMVALLTGAGLAGAQTISDPAQLAPCFNAYLLDQYPSGECCNKLK 60
           M K PIT+ +LF +A+MVALL+GA +A A   S P +L+ C  A      PS  CCNKL+
Sbjct: 1   MKKFPITIAFLF-MAVMVALLSGARVAEAVNCS-PMELSSCAGAITSSSTPSSTCCNKLR 60

Query: 61  EPQTYSNWYCVVLKFTTRETDLASSRATKIAEDCGITFQS 101
           E +      C  ++       + S  A K+A  CG+ F S
Sbjct: 61  EQKP---CLCGYIRNPALRPYVQSPGARKVAAKCGVPFPS 95

The following BLAST results are available for this feature:

BLAST of Spg018816 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444079.1	5.8e-09	40.57	PREDICTED: non-specific lipid-transfer protein 2P-like [Cucumis melo] >KAA006416...	[more]
KAG7026200.1	2.1e-06	43.40	hypothetical protein SDJN02_12699, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8648021.1	2.1e-06	40.95	hypothetical protein Csa_005848 [Cucumis sativus]	[more]
XP_022143278.1	6.0e-06	43.00	non-specific lipid-transfer protein 2-like [Momordica charantia]	[more]
KAG6581747.1	6.0e-06	42.45	hypothetical protein SDJN03_21749, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg018816 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7R4	2.8e-09	40.57	Non-specific lipid-transfer protein 2P-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BAC3	2.8e-09	40.57	non-specific lipid-transfer protein 2P-like OS=Cucumis melo OX=3656 GN=LOC103487...	[more]
A0A0A0KZL4	1.0e-06	40.95	Putative lipid transfer protein family protein OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1CQB8	2.9e-06	43.00	non-specific lipid-transfer protein 2-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1GTR0	6.5e-06	39.00	non-specific lipid-transfer protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Spg018816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 28..101 e-value: 4.4E-5 score: 23.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 33..101 e-value: 2.3E-9 score: 39.3
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 35..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018816.1	Spg018816.1	mRNA