Spg018526 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018526
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 9992927 .. 9993265 (+)
RNA-Seq ExpressionSpg018526
SyntenySpg018526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGGCAATGGCAGTCCTGATATTGATGCTGAGTGGAAGCAATTGTAAGGTCGTTGCTTCTCTAAGTCCTTTCAATGTCGGCAACCAGACCGTCGCCGCTGCGGCGTCCATGTGGTGCGATGGCCGCACAGAAGAATGCCTGGCCGGAGAAGACGACGGTGAGTCGGCATTTCCAAGCTTGCAAGCCAGGAATCCTAGGGCTACTGACGGGACGAGAAGACGGGGAAAACCTGCATGTGGTCGGCCGAATGGAGGAAGATATTATGACTGTACCGGCAAAGGACGAGTAATTCCCATTCCCCAACGCTGTGACACATATACTCGCAACTGTTAA

mRNA sequence

ATGGCAACGGCAATGGCAGTCCTGATATTGATGCTGAGTGGAAGCAATTGTAAGGTCGTTGCTTCTCTAAGTCCTTTCAATGTCGGCAACCAGACCGTCGCCGCTGCGGCGTCCATGTGGTGCGATGGCCGCACAGAAGAATGCCTGGCCGGAGAAGACGACGGTGAGTCGGCATTTCCAAGCTTGCAAGCCAGGAATCCTAGGGCTACTGACGGGACGAGAAGACGGGGAAAACCTGCATGTGGTCGGCCGAATGGAGGAAGATATTATGACTGTACCGGCAAAGGACGAGTAATTCCCATTCCCCAACGCTGTGACACATATACTCGCAACTGTTAA

Coding sequence (CDS)

ATGGCAACGGCAATGGCAGTCCTGATATTGATGCTGAGTGGAAGCAATTGTAAGGTCGTTGCTTCTCTAAGTCCTTTCAATGTCGGCAACCAGACCGTCGCCGCTGCGGCGTCCATGTGGTGCGATGGCCGCACAGAAGAATGCCTGGCCGGAGAAGACGACGGTGAGTCGGCATTTCCAAGCTTGCAAGCCAGGAATCCTAGGGCTACTGACGGGACGAGAAGACGGGGAAAACCTGCATGTGGTCGGCCGAATGGAGGAAGATATTATGACTGTACCGGCAAAGGACGAGTAATTCCCATTCCCCAACGCTGTGACACATATACTCGCAACTGTTAA

Protein sequence

MATAMAVLILMLSGSNCKVVASLSPFNVGNQTVAAAASMWCDGRTEECLAGEDDGESAFPSLQARNPRATDGTRRRGKPACGRPNGGRYYDCTGKGRVIPIPQRCDTYTRNC
Homology
BLAST of Spg018526 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 7.8e-20
Identity = 64/112 (57.14%), Postives = 70/112 (62.50%), Query Frame = 0

Query: 2   ATAMAVLILMLSGSNCKVVASLSPFNVGNQTVAAAASMWCDGRTEECLAGEDDGESAFPS 61
           A AM V ILMLSGS+C  VAS +P + GN TVAAAASMWCDGR EEC+  EDDGESAFPS
Sbjct: 16  AAAMGVFILMLSGSHCS-VASPTPSSYGNITVAAAASMWCDGRVEECVTREDDGESAFPS 75

Query: 62  LQARNPR-ATDGTRRRGKPACGRPNGGRYYDCTGKGRVIPIPQRCDTYTRNC 113
           L A  P+  +  TR R KP C RP  G Y  C    R       C TY R C
Sbjct: 76  LLASTPKFISFPTRNRNKPVCERP--GDYKSCFNARRTNTKNDNCGTYGRAC 124

BLAST of Spg018526 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 8.9e-16
Identity = 56/112 (50.00%), Postives = 65/112 (58.04%), Query Frame = 0

Query: 2   ATAMAVLILMLSGSNCKVVASLSPFNVGNQTVAAAASMWCDGRTEECLAGEDDGESAFPS 61
           A AM V IL+LSGS+C  VAS +P + GN TVAAAASMWCDGR EEC+  E D  SAFPS
Sbjct: 13  AAAMGVFILVLSGSDCN-VASPTPSSYGNNTVAAAASMWCDGRVEECVTREGDSASAFPS 72

Query: 62  LQARNPR-ATDGTRRRGKPACGRPNGGRYYDCTGKGRVIPIPQRCDTYTRNC 113
           LQ    +  +  +    K  C RP+   Y  C    R  P P  C  YTR C
Sbjct: 73  LQTSTRKYISPSSVNSNKAVCERPD--EYRSCFNPRRSNPNPNNCGRYTRVC 121

BLAST of Spg018526 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 37/122 (30.33%), Postives = 56/122 (45.90%), Query Frame = 0

Query: 2   ATAMAVLILMLSGSNCKVVASLSPFNVGNQTVAAAASMWCDGRTEECLAGEDDGESA--- 61
           +  MA  +L  S +   ++  L+P  + +  +   A+ WCDGR E CL G+ + +S    
Sbjct: 5   SNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLM 64

Query: 62  ----------FPSLQARNPRATDGTRRRGKPACGRPNGGRYYDCTGKGRVIPIPQRCDTY 111
                     F S Q  N   T+   ++  P C RP   RY  C G+  +IP P+ CDT 
Sbjct: 65  ETETSRMLLDFNSFQTPN---TNNPDKQSAPECNRP--PRYDGCLGQKNIIPNPENCDTR 121

BLAST of Spg018526 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 1  MATAMAVLILMLSGSNCKVVASLSPFNVGNQTVAAAASMWCDGRTEECLAGEDD 55
          MA   A+++L L+ SN    ASLS  N GN+T A A S WCD RTEECL G+DD
Sbjct: 7  MAAVAAIVVLTLAASNGN-AASLSRSNFGNETDAGAPSTWCDRRTEECLVGDDD 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607070.17.8e-2057.14hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.18.9e-1650.00hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607065.12.7e-0430.33hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.14.6e-0455.56Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018526.1Spg018526.1mRNA