Spg015632 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015632
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 19104325 .. 19105226 (-)
RNA-Seq ExpressionSpg015632
SyntenySpg015632
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATGTGTTGAGCAGAGGGCAACTGGCGTTATGGTTGTTACACACAAAGGGAGCACAGTAAATGGAAGATCTTACTGTTTGACAGATAATAAAAATTTTCCATGAAACCCTGAAGTTAAAACGATAACTTAAATTAATTAGGAGATAATTAGGGGCTAATTATTTGTTGAAGATCTTTAAGTTAGTGCCCTATTTATACGAGCTCCCATCAGGTATGTTTTTCATTCTCATCTTTTATTACTACTGATGTGATTTTTTTCTGTGTGTATTATTATTGTGAGGGAAAAAAACACGAGCAAGGAAAAAATGTTGAGACTGTTGAGATTGAGATGGAACTGAGTGAAGAAGTTGAGCTTGATGAAAGATTCTGGTACGTGAGATTTATCCATGAAGAGGCAAGACAAATATATCAAGAAGTCCTGAAGCGAGATGTTCTAATGGAGCGCGACTTTGATGGTGGCAAAGAGCTTCCACATTTTCTTTAAGCAGACATCACTAATCACAGTTGGAAACAATTCAGCGCAAAGTCGGAGCCCACTGTTGATCAACTAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTCATGGAGTTGCTCTCGATTGGAGCCCTGGAGTGATTAATTCTCTATTTAATCTGCAAGACTTCCCCCACACTGTTTTCAATGAAATATTAGTTGCTTCCTCAAACGAGCAACTGAATGCCTAGTGGAGGTTGTCTAGTAAAGGGGCAAGAACATTCCAGTCAACATACCTGAAGTGTGAGGCTAACGCTTGGCTCACCTTTGTCAAGCAGAGATTATTGCCTACAACATACGCCTCCACTATCCCCCGTGATCAAGTGCACTTGAAGGTTCAGAGTCCCAAAGAGTTCCAATGA

mRNA sequence

ATGTCATGTGTTGAGCAGAGGGCAACTGGCGTTATGGTTGTTACACACAAAGGGAGCACAGGAAAAAAACACGAGCAAGGAAAAAATGTTGAGACTGTTGAGATTGAGATGGAACTGAGTGAAGAAGTTGAGCTTGATGAAAGATTCTGCGCAAAGTCGGAGCCCACTGTTGATCAACTAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTCATGGAGTTGCTCTCGATTGGAGCCCTGGATGGAGGTTGTCTAGTAAAGGGGCAAGAACATTCCAGTCAACATACCTGAAGTGTGAGGCTAACGCTTGGCTCACCTTTGTCAAGCAGAGATTATTGCCTACAACATACGCCTCCACTATCCCCCGTGATCAAGTGCACTTGAAGGTTCAGAGTCCCAAAGAGTTCCAATGA

Coding sequence (CDS)

ATGTCATGTGTTGAGCAGAGGGCAACTGGCGTTATGGTTGTTACACACAAAGGGAGCACAGGAAAAAAACACGAGCAAGGAAAAAATGTTGAGACTGTTGAGATTGAGATGGAACTGAGTGAAGAAGTTGAGCTTGATGAAAGATTCTGCGCAAAGTCGGAGCCCACTGTTGATCAACTAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTCATGGAGTTGCTCTCGATTGGAGCCCTGGATGGAGGTTGTCTAGTAAAGGGGCAAGAACATTCCAGTCAACATACCTGAAGTGTGAGGCTAACGCTTGGCTCACCTTTGTCAAGCAGAGATTATTGCCTACAACATACGCCTCCACTATCCCCCGTGATCAAGTGCACTTGAAGGTTCAGAGTCCCAAAGAGTTCCAATGA

Protein sequence

MSCVEQRATGVMVVTHKGSTGKKHEQGKNVETVEIEMELSEEVELDERFCAKSEPTVDQLEREFYANIDENEGFLVIVHGVALDWSPGWRLSSKGARTFQSTYLKCEANAWLTFVKQRLLPTTYASTIPRDQVHLKVQSPKEFQ
Homology
[Close]
BLAST of Spg015632 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 37/129 (28.68%), Postives = 53/129 (41.09%), Query Frame = 0 

Query: 47  ERFCAKSEPTVDQLEREFYANIDENEGFLVIVHGVALDWS-------------------- 106
           ++FCA  E  +  L REFYAN+ + E   V V GV + WS                    
Sbjct: 73  KQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEF 132

Query: 107 --------------------PGWRLSSKGARTFQSTYLKCEANAWLTFVKQRLLPTTYAS 136
                                 W +S++GA T   + L   A  W  F+K RLLPTT+  
Sbjct: 133 IQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGK 192

[Close]
BLAST of Spg015632 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-05
Identity = 37/129 (28.68%), Postives = 53/129 (41.09%), Query Frame = 0 

Query: 47  ERFCAKSEPTVDQLEREFYANIDENEGFLVIVHGVALDWS-------------------- 106
           ++FCA  E  +  L REFYAN+ + E   V V GV + WS                    
Sbjct: 73  KQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEF 132

Query: 107 --------------------PGWRLSSKGARTFQSTYLKCEANAWLTFVKQRLLPTTYAS 136
                                 W +S++GA T   + L   A  W  F+K RLLPTT+  
Sbjct: 133 IQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGK 192

The following BLAST results are available for this feature:
BLAST of Spg015632 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.11.6e-0428.68hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
BLAST of Spg015632 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg015632 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BCG47.5e-0528.68Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of Spg015632 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015632.1Spg015632.1mRNA