Spg013887 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGGGTCGAAGAAGCGAGGCGCAGTGAAAAAGGCGCGGCCAAGGTGCGCGCTTTCCTTGAAGCCCTTGAGGCGTGTGCCTTAGGCACCTCGGGGGTCTTCACATTTTTATATATGTTTAAAATTTTTTTAAACCTAAATACTTATTATGAAAGCTAATTTTAAATGAGCATATTAACATCAAATTCAAGGCATATATTTTTTTGTGGAGTATTGATATCATCGTACTTGGTCATTCAGAGTGTCAGAAGGCATATTAACAATACTAAACTCACTGTTTTTTTGTGGAGTATTGACATTTGACTCTATGTTGGAAGACTAATATTTTAGCCTTGTTTATCTTTTATCTATTTTTCTTGGTTAAAAACTTCATTACTTGGCATGAAAGTGCTTTATATATACATGTATATATTTTTGTAAGTTTTTTTTCTATATAGTGCTCCTTAAAGAAAAAAGCCCGTGCCTTTTTGTGCGCCTTGAGCCTTTTAAAACACTGAGTGGCGACCTATAATAGTACAAAGAGGGGATAGTTTGGAAAGGTCCTTCAACTCTGGAATGAATGAGTTCAATCCATGATGGCCACCTATTTAGGATTTAATATCCTACGAGTTTCCTTGGCAATCAAATGTAGTAGGGTCGGGCGGTTGTCCCGTGAGATTAGTTGAGGTGTATGTAAACTGGCCTGGACACTCATGGATATAAAAAAAAAAAAAGCCCCTTCAACTCTTTAGGAGTTTAAGCAGGTAATGTTTAGTTTTGATGGTTGTAAGGTGCCGAGTTCAGACCTGATGACCTTGTTTCAAAAGGTGTTGGAAGACTATTAATTTCGGTCTTTTAAAACACAGAGACTTGTTTGAAAGACGTCTATCTACTTCCCAAGAAAGGAAATGTTTGTAATGTGAAAGATTTCGTGGTGATCAGTCTTGTGACTTAGTCTTTATAAGATTATGTGAGGCAAAGTATTTGGACCTTGAAATTACACTTGGTTCTTTGTGCTCAAGATGGTATAATATCTCGTACTTTTCTCTCCTATTTTCCTTTTTTAGAGGATTTCTCGTCCTTTGTTTCTCGTATCATTATTTTATGTAAGAGTAAACCATGCTTGATTTGTTGAATTTTCGAGTGTGGGAAAACACGCACAAAAAAATCATGGAATTTCTTTCATTTGCGTAAGTTGGAGCCAAGTTCAACGAGAAGTTTTTGGTGGTCTAAAAATGTGAAGTTTTTATCGCTTTATAAACTGACTGTATATTATTTATCATACCTATTTGTTTGTTTTGAACAGATGATAATCATAGCAAGGACAATAAAGAAGAAAATTCCAATTGTACGAGTAAAAAAGAGGATAAAATTGATAAGCTGAAACGTGCTGCAGTTACGACACTCTCAGCAGCAGCTGTGAAGGCAAAAATTCTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATTGAAAAACAGGTATCTCAATCGAAGTTGGTTTCCACCATTGTTCCTTACTCTCGCTTTCAAATAACATTTTCACAAAACTACCCTATCTTTCTACAGCTGCATAAGTTGGAAAGCAAGCTAGCATTCTTCAACGAGATGGATAATGTGATAATGAGAGTAAGGGAGCAACTAGACAGGTCAAAGCAGAGACTTTTCCAGGAACGTGCACAGATCATCGCCGCTCGACTCGGCTTACCTGGTTCGTCTTCACGAGGTATGGCATCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCACCCCAAAGGCCACCGACTTCGGTACCACCGGGTATAGCTGCTACTAACCCTAACCCCCAATATGCAACCACCAGTACCCCAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGACCAAATAA ATGGATGGGTCGAAGAAGCGAGGCGCAGTGAAAAAGGCGCGGCCAAGACCTGATGACCTTGTTTCAAAAGATGATAATCATAGCAAGGACAATAAAGAAGAAAATTCCAATTGTACGAGTAAAAAAGAGGATAAAATTGATAAGCTGAAACGTGCTGCAGTTACGACACTCTCAGCAGCAGCTGTGAAGGCAAAAATTCTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATTGAAAAACAGGTATCTCAATCGAAGTTGGTTTCCACCATTGTTCCTTACTCTCGCTTTCAAATAACATTTTCACAAAACTACCCTATCTTTCTACAGCTGCATAAGTTGGAAAGCAAGCTAGCATTCTTCAACGAGATGGATAATGTGATAATGAGAGTAAGGGAGCAACTAGACAGGTCAAAGCAGAGACTTTTCCAGGAACGTGCACAGATCATCGCCGCTCGACTCGGCTTACCTGGTTCGTCTTCACGAGGTATGGCATCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCACCCCAAAGGCCACCGACTTCGGTACCACCGGGTATAGCTGCTACTAACCCTAACCCCCAATATGCAACCACCAGTACCCCAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGACCAAATAA ATGGATGGGTCGAAGAAGCGAGGCGCAGTGAAAAAGGCGCGGCCAAGACCTGATGACCTTGTTTCAAAAGATGATAATCATAGCAAGGACAATAAAGAAGAAAATTCCAATTGTACGAGTAAAAAAGAGGATAAAATTGATAAGCTGAAACGTGCTGCAGTTACGACACTCTCAGCAGCAGCTGTGAAGGCAAAAATTCTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATTGAAAAACAGGTATCTCAATCGAAGTTGGTTTCCACCATTGTTCCTTACTCTCGCTTTCAAATAACATTTTCACAAAACTACCCTATCTTTCTACAGCTGCATAAGTTGGAAAGCAAGCTAGCATTCTTCAACGAGATGGATAATGTGATAATGAGAGTAAGGGAGCAACTAGACAGGTCAAAGCAGAGACTTTTCCAGGAACGTGCACAGATCATCGCCGCTCGACTCGGCTTACCTGGTTCGTCTTCACGAGGTATGGCATCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCACCCCAAAGGCCACCGACTTCGGTACCACCGGGTATAGCTGCTACTAACCCTAACCCCCAATATGCAACCACCAGTACCCCAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGACCAAATAA MDGSKKRGAVKKARPRPDDLVSKDDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK Homology
BLAST of Spg013887 vs. NCBI nr
Match: XP_038887838.1 (SWI/SNF complex subunit SWI3D [Benincasa hispida]) HSP 1 Score: 296.6 bits (758), Expect = 2.0e-76 Identity = 174/227 (76.65%), Postives = 183/227 (80.62%), Query Frame = 0
BLAST of Spg013887 vs. NCBI nr
Match: XP_004150410.1 (SWI/SNF complex subunit SWI3D isoform X1 [Cucumis sativus]) HSP 1 Score: 295.8 bits (756), Expect = 3.3e-76 Identity = 173/228 (75.88%), Postives = 182/228 (79.82%), Query Frame = 0
BLAST of Spg013887 vs. NCBI nr
Match: KAA0036601.1 (SWI/SNF complex subunit SWI3D [Cucumis melo var. makuwa] >TYK22621.1 SWI/SNF complex subunit SWI3D [Cucumis melo var. makuwa]) HSP 1 Score: 288.5 bits (737), Expect = 5.3e-74 Identity = 168/220 (76.36%), Postives = 176/220 (80.00%), Query Frame = 0
BLAST of Spg013887 vs. NCBI nr
Match: XP_008447039.1 (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo]) HSP 1 Score: 288.1 bits (736), Expect = 7.0e-74 Identity = 171/238 (71.85%), Postives = 181/238 (76.05%), Query Frame = 0
BLAST of Spg013887 vs. NCBI nr
Match: XP_022135773.1 (SWI/SNF complex subunit SWI3D [Momordica charantia]) HSP 1 Score: 284.3 bits (726), Expect = 1.0e-72 Identity = 169/221 (76.47%), Postives = 176/221 (79.64%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy Swiss-Prot
Match: Q8VY05 (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3) HSP 1 Score: 142.9 bits (359), Expect = 4.7e-33 Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy Swiss-Prot
Match: Q53KK6 (SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 GN=SWI3C PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10 Identity = 54/162 (33.33%), Postives = 87/162 (53.70%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A5D3DFZ6 (SWI/SNF complex subunit SWI3D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00480 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.6e-74 Identity = 168/220 (76.36%), Postives = 176/220 (80.00%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A1S3BH30 (SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 3.4e-74 Identity = 171/238 (71.85%), Postives = 181/238 (76.05%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A6J1C5U7 (SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=4 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 4.9e-73 Identity = 169/221 (76.47%), Postives = 176/221 (79.64%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A6J1I4Y3 (SWI/SNF complex subunit SWI3D isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471039 PE=4 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 6.4e-73 Identity = 165/218 (75.69%), Postives = 174/218 (79.82%), Query Frame = 0
BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A6J1IA51 (SWI/SNF complex subunit SWI3D isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471039 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 1.1e-72 Identity = 166/228 (72.81%), Postives = 179/228 (78.51%), Query Frame = 0
BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.4 (DNA-binding family protein ) HSP 1 Score: 145.2 bits (365), Expect = 6.8e-35 Identity = 105/214 (49.07%), Postives = 129/214 (60.28%), Query Frame = 0
BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.1 (DNA-binding family protein ) HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34 Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0
BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.3 (DNA-binding family protein ) HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34 Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0
BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.2 (DNA-binding family protein ) HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34 Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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