Spg013887 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013887
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SWI/SNF complex subunit SWI3D
Location	scaffold3: 34651467 .. 34653409 (-)
RNA-Seq Expression	Spg013887
Synteny	Spg013887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGTCGAAGAAGCGAGGCGCAGTGAAAAAGGCGCGGCCAAGGTGCGCGCTTTCCTTGAAGCCCTTGAGGCGTGTGCCTTAGGCACCTCGGGGGTCTTCACATTTTTATATATGTTTAAAATTTTTTTAAACCTAAATACTTATTATGAAAGCTAATTTTAAATGAGCATATTAACATCAAATTCAAGGCATATATTTTTTTGTGGAGTATTGATATCATCGTACTTGGTCATTCAGAGTGTCAGAAGGCATATTAACAATACTAAACTCACTGTTTTTTTGTGGAGTATTGACATTTGACTCTATGTTGGAAGACTAATATTTTAGCCTTGTTTATCTTTTATCTATTTTTCTTGGTTAAAAACTTCATTACTTGGCATGAAAGTGCTTTATATATACATGTATATATTTTTGTAAGTTTTTTTTCTATATAGTGCTCCTTAAAGAAAAAAGCCCGTGCCTTTTTGTGCGCCTTGAGCCTTTTAAAACACTGAGTGGCGACCTATAATAGTACAAAGAGGGGATAGTTTGGAAAGGTCCTTCAACTCTGGAATGAATGAGTTCAATCCATGATGGCCACCTATTTAGGATTTAATATCCTACGAGTTTCCTTGGCAATCAAATGTAGTAGGGTCGGGCGGTTGTCCCGTGAGATTAGTTGAGGTGTATGTAAACTGGCCTGGACACTCATGGATATAAAAAAAAAAAAAGCCCCTTCAACTCTTTAGGAGTTTAAGCAGGTAATGTTTAGTTTTGATGGTTGTAAGGTGCCGAGTTCAGACCTGATGACCTTGTTTCAAAAGGTGTTGGAAGACTATTAATTTCGGTCTTTTAAAACACAGAGACTTGTTTGAAAGACGTCTATCTACTTCCCAAGAAAGGAAATGTTTGTAATGTGAAAGATTTCGTGGTGATCAGTCTTGTGACTTAGTCTTTATAAGATTATGTGAGGCAAAGTATTTGGACCTTGAAATTACACTTGGTTCTTTGTGCTCAAGATGGTATAATATCTCGTACTTTTCTCTCCTATTTTCCTTTTTTAGAGGATTTCTCGTCCTTTGTTTCTCGTATCATTATTTTATGTAAGAGTAAACCATGCTTGATTTGTTGAATTTTCGAGTGTGGGAAAACACGCACAAAAAAATCATGGAATTTCTTTCATTTGCGTAAGTTGGAGCCAAGTTCAACGAGAAGTTTTTGGTGGTCTAAAAATGTGAAGTTTTTATCGCTTTATAAACTGACTGTATATTATTTATCATACCTATTTGTTTGTTTTGAACAGATGATAATCATAGCAAGGACAATAAAGAAGAAAATTCCAATTGTACGAGTAAAAAAGAGGATAAAATTGATAAGCTGAAACGTGCTGCAGTTACGACACTCTCAGCAGCAGCTGTGAAGGCAAAAATTCTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATTGAAAAACAGGTATCTCAATCGAAGTTGGTTTCCACCATTGTTCCTTACTCTCGCTTTCAAATAACATTTTCACAAAACTACCCTATCTTTCTACAGCTGCATAAGTTGGAAAGCAAGCTAGCATTCTTCAACGAGATGGATAATGTGATAATGAGAGTAAGGGAGCAACTAGACAGGTCAAAGCAGAGACTTTTCCAGGAACGTGCACAGATCATCGCCGCTCGACTCGGCTTACCTGGTTCGTCTTCACGAGGTATGGCATCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCACCCCAAAGGCCACCGACTTCGGTACCACCGGGTATAGCTGCTACTAACCCTAACCCCCAATATGCAACCACCAGTACCCCAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGACCAAATAA

mRNA sequence

ATGGATGGGTCGAAGAAGCGAGGCGCAGTGAAAAAGGCGCGGCCAAGACCTGATGACCTTGTTTCAAAAGATGATAATCATAGCAAGGACAATAAAGAAGAAAATTCCAATTGTACGAGTAAAAAAGAGGATAAAATTGATAAGCTGAAACGTGCTGCAGTTACGACACTCTCAGCAGCAGCTGTGAAGGCAAAAATTCTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATTGAAAAACAGGTATCTCAATCGAAGTTGGTTTCCACCATTGTTCCTTACTCTCGCTTTCAAATAACATTTTCACAAAACTACCCTATCTTTCTACAGCTGCATAAGTTGGAAAGCAAGCTAGCATTCTTCAACGAGATGGATAATGTGATAATGAGAGTAAGGGAGCAACTAGACAGGTCAAAGCAGAGACTTTTCCAGGAACGTGCACAGATCATCGCCGCTCGACTCGGCTTACCTGGTTCGTCTTCACGAGGTATGGCATCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCACCCCAAAGGCCACCGACTTCGGTACCACCGGGTATAGCTGCTACTAACCCTAACCCCCAATATGCAACCACCAGTACCCCAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGACCAAATAA

Coding sequence (CDS)

ATGGATGGGTCGAAGAAGCGAGGCGCAGTGAAAAAGGCGCGGCCAAGACCTGATGACCTTGTTTCAAAAGATGATAATCATAGCAAGGACAATAAAGAAGAAAATTCCAATTGTACGAGTAAAAAAGAGGATAAAATTGATAAGCTGAAACGTGCTGCAGTTACGACACTCTCAGCAGCAGCTGTGAAGGCAAAAATTCTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTTCCATGATATTAATTGAAAAACAGGTATCTCAATCGAAGTTGGTTTCCACCATTGTTCCTTACTCTCGCTTTCAAATAACATTTTCACAAAACTACCCTATCTTTCTACAGCTGCATAAGTTGGAAAGCAAGCTAGCATTCTTCAACGAGATGGATAATGTGATAATGAGAGTAAGGGAGCAACTAGACAGGTCAAAGCAGAGACTTTTCCAGGAACGTGCACAGATCATCGCCGCTCGACTCGGCTTACCTGGTTCGTCTTCACGAGGTATGGCATCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCACCCCAAAGGCCACCGACTTCGGTACCACCGGGTATAGCTGCTACTAACCCTAACCCCCAATATGCAACCACCAGTACCCCAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGACCAAATAA

Protein sequence

MDGSKKRGAVKKARPRPDDLVSKDDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK

Homology

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BLAST of Spg013887 vs. NCBI nr
Match: XP_038887838.1 (SWI/SNF complex subunit SWI3D [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 2.0e-76
Identity = 174/227 (76.65%), Postives = 183/227 (80.62%), Query Frame = 0


Query: 17   PDDLVSK--DDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQ 76
            P+ +V +  DDN SKDNKEENSN TSKKE+K+DKLKRAAVTTLSAAAVKAKILANQEEDQ
Sbjct: 828  PNSVVERGADDNQSKDNKEENSNSTSKKEEKVDKLKRAAVTTLSAAAVKAKILANQEEDQ 887

Query: 77   IRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIM 136
            IRQL+MILIEK                             QLHKLESKLAFFNEMDNV M
Sbjct: 888  IRQLAMILIEK-----------------------------QLHKLESKLAFFNEMDNVTM 947

Query: 137  RVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMA 196
            RVREQLDRSKQRLFQERAQIIAARLGLP SSSRG+A TLPANRMAMNF NS PRPPMGM 
Sbjct: 948  RVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMAMNFANSAPRPPMGMM 1007

Query: 197  PQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
            PQRPPTS P G+AATNPNPQYATTST ISG+SFRPANQDTLSSVGTK
Sbjct: 1008 PQRPPTSGPSGMAATNPNPQYATTSTTISGNSFRPANQDTLSSVGTK 1025

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BLAST of Spg013887 vs. NCBI nr
Match: XP_004150410.1 (SWI/SNF complex subunit SWI3D isoform X1 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 3.3e-76
Identity = 173/228 (75.88%), Postives = 182/228 (79.82%), Query Frame = 0


Query: 16   RPDDLVSK--DDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEED 75
            +P+ +V +  DDN SKDNKEENSN T KKE+KIDKLKRAAVTTLSAAAVKAKILANQEED
Sbjct: 826  KPNSVVERRADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKILANQEED 885

Query: 76   QIRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVI 135
            QIRQL+MILIEK                             QLHKLESKLAFFNEMDNV 
Sbjct: 886  QIRQLAMILIEK-----------------------------QLHKLESKLAFFNEMDNVT 945

Query: 136  MRVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGM 195
            +RVREQLDRSKQRLFQERAQIIAARLGLP SSSRG+A TLPANRMAMNFPNS PRPPMGM
Sbjct: 946  LRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMAMNFPNSAPRPPMGM 1005

Query: 196  APQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
             PQRPP S PPG+A TNPNPQYATTST ISGSS RPANQDTLSSVGTK
Sbjct: 1006 TPQRPPISGPPGMAPTNPNPQYATTSTTISGSSIRPANQDTLSSVGTK 1024

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BLAST of Spg013887 vs. NCBI nr
Match: KAA0036601.1 (SWI/SNF complex subunit SWI3D [Cucumis melo var. makuwa] >TYK22621.1 SWI/SNF complex subunit SWI3D [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 5.3e-74
Identity = 168/220 (76.36%), Postives = 176/220 (80.00%), Query Frame = 0


Query: 22  SKDDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMI 81
           +++DN SKDNKEENSN T KKE+KIDKLK AAVT LSAAAVKAKILANQEEDQIRQL+MI
Sbjct: 11  TRNDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVKAKILANQEEDQIRQLAMI 70

Query: 82  LIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLD 141
           LIEK                             QLHKLESKLAFFNEMDNV MRVREQLD
Sbjct: 71  LIEK-----------------------------QLHKLESKLAFFNEMDNVTMRVREQLD 130

Query: 142 RSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTS 201
           RSKQRLFQERAQIIAARLGLP SSSRG+A TLPANRMA NFPNS PRPPMGM PQRPPTS
Sbjct: 131 RSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMATNFPNSAPRPPMGMTPQRPPTS 190

Query: 202 VPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
            PPG+A TNPNPQYAT+ST ISGSS RPANQDTLSSVGTK
Sbjct: 191 GPPGMAPTNPNPQYATSSTTISGSSIRPANQDTLSSVGTK 201

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BLAST of Spg013887 vs. NCBI nr
Match: XP_008447039.1 (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 7.0e-74
Identity = 171/238 (71.85%), Postives = 181/238 (76.05%), Query Frame = 0


Query: 4    SKKRGAVKKARPRPDDLVSKDDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVK 63
            S++  + +  +P        DDN SKDNKEENSN T KKE+KIDKLK AAVT LSAAAVK
Sbjct: 818  SEENASTEPVKPNSAVERRADDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVK 877

Query: 64   AKILANQEEDQIRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKL 123
            AKILANQEEDQIRQL+MILIEK                             QLHKLESKL
Sbjct: 878  AKILANQEEDQIRQLAMILIEK-----------------------------QLHKLESKL 937

Query: 124  AFFNEMDNVIMRVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFP 183
            AFFNEMDNV MRVREQLDRSKQRLFQERAQIIAARLGLP SSSRG+A TLPANRMA NFP
Sbjct: 938  AFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMATNFP 997

Query: 184  NSVPRPPMGMAPQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
            NS PRPPMGM PQRPPTS PPG+A TNPNPQYAT+ST ISGSS RPANQDTLSSVGTK
Sbjct: 998  NSAPRPPMGMTPQRPPTSGPPGMAPTNPNPQYATSSTTISGSSIRPANQDTLSSVGTK 1026

[Close]

BLAST of Spg013887 vs. NCBI nr
Match: XP_022135773.1 (SWI/SNF complex subunit SWI3D [Momordica charantia])

HSP 1 Score: 284.3 bits (726), Expect = 1.0e-72
Identity = 169/221 (76.47%), Postives = 176/221 (79.64%), Query Frame = 0


Query: 25   DNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 84
            DN SKDNKEE S+CTSKKEDKIDKLKRAAVTTLSAAAVKAK+LANQEEDQIRQL+MILIE
Sbjct: 842  DNQSKDNKEEKSSCTSKKEDKIDKLKRAAVTTLSAAAVKAKVLANQEEDQIRQLAMILIE 901

Query: 85   KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 144
            K                             QLHKLESKLAFFNEMDNV MRVREQLDRSK
Sbjct: 902  K-----------------------------QLHKLESKLAFFNEMDNVTMRVREQLDRSK 961

Query: 145  QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 204
            QRLFQERAQIIAARLGLP +SSR MA +LPANRMAMNF NSVPRPPMGM  QRPPTS P 
Sbjct: 962  QRLFQERAQIIAARLGLPATSSRVMAPSLPANRMAMNFANSVPRPPMGMTSQRPPTSGPV 1021

Query: 205  GIAATNPN----PQYATTSTPISGSSFRPANQDTLSSVGTK 242
            G+AATNPN    PQYATTST ISGSSFRPANQDT+SSVGTK
Sbjct: 1022 GMAATNPNLQPQPQYATTSTTISGSSFRPANQDTISSVGTK 1033

[Close]

BLAST of Spg013887 vs. ExPASy Swiss-Prot
Match: Q8VY05 (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-33
Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 26  NHSKDNKEENSNCTSKKED-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 85
           N + + K+E   C   K+   I+KLKRAA++ +SAAAVKAK LA QEEDQIRQLS  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 86  KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 145
           K                             QLHKLE+KL+ FNE +++ MRVREQL+RS+
Sbjct: 867 K-----------------------------QLHKLEAKLSIFNEAESLTMRVREQLERSR 926

Query: 146 QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 205
           QRL+ ERAQIIAARLG+P S S    ++LP NR+A NF N   RPPMGMA  RPP   PP
Sbjct: 927 QRLYHERAQIIAARLGVPPSMS--SKASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPP 985

Query: 206 GIAATNPNPQYATTSTPISGSSFRPANQDTLSSV 239
           G     P P     +T ++GSS      D +SSV
Sbjct: 987 GF----PVPGSFVAATTMTGSSDPSPGSDNVSSV 985

[Close]

BLAST of Spg013887 vs. ExPASy Swiss-Prot
Match: Q53KK6 (SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10
Identity = 54/162 (33.33%), Postives = 87/162 (53.70%), Query Frame = 0


Query: 47  DKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIEKQVSQSKLVSTIVPYSRFQITF 106
           +K+K AA+  LSAAA KAK+ A+QEE +I++L+  +I                       
Sbjct: 584 EKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINH--------------------- 643

Query: 107 SQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSKQRLFQERAQIIAARLGLPGSS- 166
                   QL +LE KL  F E++ ++++  EQ++R +QR+  +R +I++ RL  PG+S 
Sbjct: 644 --------QLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDRVRIVSTRLASPGNSL 703

Query: 167 SRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPPGIA 208
             G  ST+ +N M+M+     PR PMG+    P +S+P   A
Sbjct: 704 PGGSTSTMSSNPMSMS-----PR-PMGVPGSMPQSSMPAPFA 710

[Close]

BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A5D3DFZ6 (SWI/SNF complex subunit SWI3D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00480 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.6e-74
Identity = 168/220 (76.36%), Postives = 176/220 (80.00%), Query Frame = 0


Query: 22  SKDDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMI 81
           +++DN SKDNKEENSN T KKE+KIDKLK AAVT LSAAAVKAKILANQEEDQIRQL+MI
Sbjct: 11  TRNDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVKAKILANQEEDQIRQLAMI 70

Query: 82  LIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLD 141
           LIEK                             QLHKLESKLAFFNEMDNV MRVREQLD
Sbjct: 71  LIEK-----------------------------QLHKLESKLAFFNEMDNVTMRVREQLD 130

Query: 142 RSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTS 201
           RSKQRLFQERAQIIAARLGLP SSSRG+A TLPANRMA NFPNS PRPPMGM PQRPPTS
Sbjct: 131 RSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMATNFPNSAPRPPMGMTPQRPPTS 190

Query: 202 VPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
            PPG+A TNPNPQYAT+ST ISGSS RPANQDTLSSVGTK
Sbjct: 191 GPPGMAPTNPNPQYATSSTTISGSSIRPANQDTLSSVGTK 201

[Close]

BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A1S3BH30 (SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.4e-74
Identity = 171/238 (71.85%), Postives = 181/238 (76.05%), Query Frame = 0


Query: 4    SKKRGAVKKARPRPDDLVSKDDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVK 63
            S++  + +  +P        DDN SKDNKEENSN T KKE+KIDKLK AAVT LSAAAVK
Sbjct: 818  SEENASTEPVKPNSAVERRADDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVK 877

Query: 64   AKILANQEEDQIRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKL 123
            AKILANQEEDQIRQL+MILIEK                             QLHKLESKL
Sbjct: 878  AKILANQEEDQIRQLAMILIEK-----------------------------QLHKLESKL 937

Query: 124  AFFNEMDNVIMRVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFP 183
            AFFNEMDNV MRVREQLDRSKQRLFQERAQIIAARLGLP SSSRG+A TLPANRMA NFP
Sbjct: 938  AFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMATNFP 997

Query: 184  NSVPRPPMGMAPQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
            NS PRPPMGM PQRPPTS PPG+A TNPNPQYAT+ST ISGSS RPANQDTLSSVGTK
Sbjct: 998  NSAPRPPMGMTPQRPPTSGPPGMAPTNPNPQYATSSTTISGSSIRPANQDTLSSVGTK 1026

[Close]

BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A6J1C5U7 (SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.9e-73
Identity = 169/221 (76.47%), Postives = 176/221 (79.64%), Query Frame = 0


Query: 25   DNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 84
            DN SKDNKEE S+CTSKKEDKIDKLKRAAVTTLSAAAVKAK+LANQEEDQIRQL+MILIE
Sbjct: 842  DNQSKDNKEEKSSCTSKKEDKIDKLKRAAVTTLSAAAVKAKVLANQEEDQIRQLAMILIE 901

Query: 85   KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 144
            K                             QLHKLESKLAFFNEMDNV MRVREQLDRSK
Sbjct: 902  K-----------------------------QLHKLESKLAFFNEMDNVTMRVREQLDRSK 961

Query: 145  QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 204
            QRLFQERAQIIAARLGLP +SSR MA +LPANRMAMNF NSVPRPPMGM  QRPPTS P 
Sbjct: 962  QRLFQERAQIIAARLGLPATSSRVMAPSLPANRMAMNFANSVPRPPMGMTSQRPPTSGPV 1021

Query: 205  GIAATNPN----PQYATTSTPISGSSFRPANQDTLSSVGTK 242
            G+AATNPN    PQYATTST ISGSSFRPANQDT+SSVGTK
Sbjct: 1022 GMAATNPNLQPQPQYATTSTTISGSSFRPANQDTISSVGTK 1033

[Close]

BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A6J1I4Y3 (SWI/SNF complex subunit SWI3D isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471039 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 6.4e-73
Identity = 165/218 (75.69%), Postives = 174/218 (79.82%), Query Frame = 0


Query: 24   DDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILI 83
            DDN SKDNKEENSNC SKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIR L+MILI
Sbjct: 838  DDNQSKDNKEENSNCMSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRHLAMILI 897

Query: 84   EKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRS 143
            EK                             QLHKLESKLAFFN+MDNV +R+REQLDRS
Sbjct: 898  EK-----------------------------QLHKLESKLAFFNDMDNVTVRMREQLDRS 957

Query: 144  KQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVP 203
            KQRLFQERAQIIAARLGLP SSSRG A TLP NRM MNF N+VPRPPMGM P+RPPTS  
Sbjct: 958  KQRLFQERAQIIAARLGLPASSSRGGAPTLPTNRMPMNFANTVPRPPMGMVPKRPPTSGL 1017

Query: 204  PGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
            PG+AA+NPNPQY TTST ISGSSFRPANQDTLSSVG+K
Sbjct: 1018 PGMAASNPNPQYPTTSTTISGSSFRPANQDTLSSVGSK 1026

[Close]

BLAST of Spg013887 vs. ExPASy TrEMBL
Match: A0A6J1IA51 (SWI/SNF complex subunit SWI3D isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471039 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.1e-72
Identity = 166/228 (72.81%), Postives = 179/228 (78.51%), Query Frame = 0


Query: 16   RPDDLVSK--DDNHSKDNKEENSNCTSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEED 75
            +P  ++ +  DDN SKDNKEENSNC SKKEDKIDKLKRAAVTTLSAAAVKAKILANQEED
Sbjct: 827  KPTSVIERGADDNQSKDNKEENSNCMSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEED 886

Query: 76   QIRQLSMILIEKQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVI 135
            QIR L+MILIEK                             QLHKLESKLAFFN+MDNV 
Sbjct: 887  QIRHLAMILIEK-----------------------------QLHKLESKLAFFNDMDNVT 946

Query: 136  MRVREQLDRSKQRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGM 195
            +R+REQLDRSKQRLFQERAQIIAARLGLP SSSRG A TLP NRM MNF N+VPRPPMGM
Sbjct: 947  VRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAPTLPTNRMPMNFANTVPRPPMGM 1006

Query: 196  APQRPPTSVPPGIAATNPNPQYATTSTPISGSSFRPANQDTLSSVGTK 242
             P+RPPTS  PG+AA+NPNPQY TTST ISGSSFRPANQDTLSSVG+K
Sbjct: 1007 VPKRPPTSGLPGMAASNPNPQYPTTSTTISGSSFRPANQDTLSSVGSK 1025

[Close]

BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.4 (DNA-binding family protein )

HSP 1 Score: 145.2 bits (365), Expect = 6.8e-35
Identity = 105/214 (49.07%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 26  NHSKDNKEENSNCTSKKED-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 85
           N + + K+E   C   K+   I+KLKRAA++ +SAAAVKAK LA QEEDQIRQLS  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 86  KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 145
           KQ                            QLHKLE+KL+ FNE +++ MRVREQL+RS+
Sbjct: 867 KQ----------------------------QLHKLEAKLSIFNEAESLTMRVREQLERSR 926

Query: 146 QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 205
           QRL+ ERAQIIAARLG+P S S    ++LP NR+A NF N   RPPMGMA  RPP   PP
Sbjct: 927 QRLYHERAQIIAARLGVPPSMS--SKASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPP 986

Query: 206 GIAATNPNPQYATTSTPISGSSFRPANQDTLSSV 239
           G     P P     +T ++GSS      D +SSV
Sbjct: 987 GF----PVPGSFVAATTMTGSSDPSPGSDNVSSV 986

[Close]

BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.1 (DNA-binding family protein )

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34
Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 26  NHSKDNKEENSNCTSKKED-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 85
           N + + K+E   C   K+   I+KLKRAA++ +SAAAVKAK LA QEEDQIRQLS  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 86  KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 145
           K                             QLHKLE+KL+ FNE +++ MRVREQL+RS+
Sbjct: 867 K-----------------------------QLHKLEAKLSIFNEAESLTMRVREQLERSR 926

Query: 146 QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 205
           QRL+ ERAQIIAARLG+P S S    ++LP NR+A NF N   RPPMGMA  RPP   PP
Sbjct: 927 QRLYHERAQIIAARLGVPPSMS--SKASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPP 985

Query: 206 GIAATNPNPQYATTSTPISGSSFRPANQDTLSSV 239
           G     P P     +T ++GSS      D +SSV
Sbjct: 987 GF----PVPGSFVAATTMTGSSDPSPGSDNVSSV 985

[Close]

BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.3 (DNA-binding family protein )

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34
Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 26  NHSKDNKEENSNCTSKKED-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 85
           N + + K+E   C   K+   I+KLKRAA++ +SAAAVKAK LA QEEDQIRQLS  LIE
Sbjct: 805 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 864

Query: 86  KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 145
           K                             QLHKLE+KL+ FNE +++ MRVREQL+RS+
Sbjct: 865 K-----------------------------QLHKLEAKLSIFNEAESLTMRVREQLERSR 924

Query: 146 QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 205
           QRL+ ERAQIIAARLG+P S S    ++LP NR+A NF N   RPPMGMA  RPP   PP
Sbjct: 925 QRLYHERAQIIAARLGVPPSMS--SKASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPP 983

Query: 206 GIAATNPNPQYATTSTPISGSSFRPANQDTLSSV 239
           G     P P     +T ++GSS      D +SSV
Sbjct: 985 GF----PVPGSFVAATTMTGSSDPSPGSDNVSSV 983

[Close]

BLAST of Spg013887 vs. TAIR 10
Match: AT4G34430.2 (DNA-binding family protein )

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34
Identity = 104/214 (48.60%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 26  NHSKDNKEENSNCTSKKED-KIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLSMILIE 85
           N + + K+E   C   K+   I+KLKRAA++ +SAAAVKAK LA QEEDQIRQLS  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 86  KQVSQSKLVSTIVPYSRFQITFSQNYPIFLQLHKLESKLAFFNEMDNVIMRVREQLDRSK 145
           K                             QLHKLE+KL+ FNE +++ MRVREQL+RS+
Sbjct: 867 K-----------------------------QLHKLEAKLSIFNEAESLTMRVREQLERSR 926

Query: 146 QRLFQERAQIIAARLGLPGSSSRGMASTLPANRMAMNFPNSVPRPPMGMAPQRPPTSVPP 205
           QRL+ ERAQIIAARLG+P S S    ++LP NR+A NF N   RPPMGMA  RPP   PP
Sbjct: 927 QRLYHERAQIIAARLGVPPSMS--SKASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPP 985

Query: 206 GIAATNPNPQYATTSTPISGSSFRPANQDTLSSV 239
           G     P P     +T ++GSS      D +SSV
Sbjct: 987 GF----PVPGSFVAATTMTGSSDPSPGSDNVSSV 985

The following BLAST results are available for this feature:

BLAST of Spg013887 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887838.1	2.0e-76	76.65	SWI/SNF complex subunit SWI3D [Benincasa hispida]	[more]
XP_004150410.1	3.3e-76	75.88	SWI/SNF complex subunit SWI3D isoform X1 [Cucumis sativus]	[more]
KAA0036601.1	5.3e-74	76.36	SWI/SNF complex subunit SWI3D [Cucumis melo var. makuwa] >TYK22621.1 SWI/SNF com...	[more]
XP_008447039.1	7.0e-74	71.85	PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo]	[more]
XP_022135773.1	1.0e-72	76.47	SWI/SNF complex subunit SWI3D [Momordica charantia]	[more]

BLAST of Spg013887 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY05	4.7e-33	48.60	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3	[more]
Q53KK6	9.6e-10	33.33	SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of Spg013887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFZ6	2.6e-74	76.36	SWI/SNF complex subunit SWI3D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BH30	3.4e-74	71.85	SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1	[more]
A0A6J1C5U7	4.9e-73	76.47	SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=...	[more]
A0A6J1I4Y3	6.4e-73	75.69	SWI/SNF complex subunit SWI3D isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1IA51	1.1e-72	72.81	SWI/SNF complex subunit SWI3D isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Spg013887 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34430.4	6.8e-35	49.07	DNA-binding family protein	[more]
AT4G34430.1	3.4e-34	48.60	DNA-binding family protein	[more]
AT4G34430.3	3.4e-34	48.60	DNA-binding family protein	[more]
AT4G34430.2	3.4e-34	48.60	DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032451	SMARCC, C-terminal	PFAM	PF16495	SWIRM-assoc_1	coord: 114..160 e-value: 3.7E-13 score: 49.2 coord: 55..88 e-value: 1.4E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..241
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 115..200
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 115..200
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 32..88
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 32..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013887.1	Spg013887.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding