Spg013687 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013687
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein KINESIN LIGHT CHAIN-RELATED 1
Location	scaffold3: 42320330 .. 42322010 (+)
RNA-Seq Expression	Spg013687
Synteny	Spg013687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGAACATAACATAATTGATATGTACAACCTCCCAACAGGGGGAGATTTCCCCAAATCTGGTTCAGTTTCACCTCTCTCGCACTCCAGTCGACTCAATCACGAGTCAGTTCCATTCATCCCTCACACTTTCGTTCCTGCACCCAAAACCATGTCTTGTTCCTCAAATTCAGTCAGTTCGAAAGAAACCCATGTTGAAATTTGTGGGCAAACTGCCTCAAATTTCTTCCAGAAAGGGAAAAGTCGAAGAAAAACCCGAGCTGGAGGAGGCCTTCAACTCTGCAGACTGTTGATGAAATGCTCAAGGCGTTTAAGGACATGGGATCCGCTTCTGAGGAGAAGGGTCTTGGATTCGCTTCCTTGAGAATTGGTCTGAAACTTGACCAAGAAGGTGAGGATCCTGAAAATAACTCTGTCATATGCTAATAGAACTTTTAAAACTCTGTCATGACATTGCAATTTATGGGTTCTGTTTTATTATAGCTTGAAAAGGTTCGATGACAATTTGGGGCACCAGAATAGTGTTAATTGGATACTGGGTTAGTTAGAGGAGAAGGGTTTTAGTGCTGAGAGTTCATGTTGAATCCAAAAGCTTAAGCTGAAAAATGGGGAGAAGAGAAGGAACTCTTTTTAATCTTAGGAAGTGTTTAAATATCAGGGAGCTAACCTTGGAGAAGGATGGTAGAGAATTGGGGAGCGTAAATCGCGATATAAGGGTGTGCTTCCATTTTGTATGAAAGCATTGGAGATGCATAAGAAGCAATTAGGACATAGTTCAGTTGATGTTGCCTATGATAGAGGCTTTTTAGGGGGTGATTTATGGTGGATTGGAAGAACATGAAAAAGGCATTGGAGCAGAATGATTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGGGAAACAAATTTCATTGATAAATGAAATAAAACGGAGTAAAAAACTCCAACACCTAAAAAGGTGAGTTACAAGAGAGATCTCCCATTTAGAATTAAAGAAGAAAGACTGTAATCAGAAAAGGGATGTTTACATCTGCACCAATATAAAGCATGAAAAATAATAAAATCCATAAAGTTTTTAAAAGATAAGAAAGAGGCCCTGAAGATGCGTCCATTTCTTTCGCCCCAAAGAAACCAGAGGAAGACCCTATTAAGAGCAAGTCATAGGATCTTCTTCACCCCATGGAAAGGATGTCCCACAAAAATGGAGGCAAGAACATCATAAATGTTGTTTGGTAAAGCCAAGGACCAACCAAAGGCATGAAAGATTGTTGACCAATATCGAGAAGCAAAGACGCAGTGAGAAAATAAATGACATGCATCTTCCGAGGCAGAACAACACATAACACACCAAGATATTGTTCAAACATACAGATTGGAGCAGAATGAATTGCCTCAGAAGGTTTTGAAGAACTGGGGCCTTAAGTCCGATTGGCATCGTAGGACTCCCAACTCAAGGATGTTGTTCAACATACAGATTGAAACAATGAAACTCAGGCAGTGATGTATATAAGTATTGTGTAATCAGGAAAAAATGGCAGATGCAAAGAGATGTTTGGAGATTGCTTGTGGAAATTCTTGACAAGAAAGAGGCCAGTTCTCGAATGGAAGCTGCTGTGGCATATTTGGAAATATCATTGCCGTATGAGACAATGAATGAGTTTGAAACTGCATTTTCTTTATGA

mRNA sequence

ATGCTCAAGGCGTTTAAGGACATGGGATCCGCTTCTGAGGAGAAGGGTCTTGGATTCGCTTCCTTGAGAATTGGTCTGAAACTTGACCAAGAAGAACAACACATAACACACCAAGATATTGTTCAAACATACAGATTGGAGCAGAATGAATTGCCTCAGAAGGTTTTGAAGAACTGGGGCCTTAAGTCCGATTGGCATCGTAGGACTCCCAACTCAAGGATGAAAAAATGGCAGATGCAAAGAGATGTTTGGAGATTGCTTGTGGAAATTCTTGACAAGAAAGAGGCCAGTTCTCGAATGGAAGCTGCTGTGGCATATTTGGAAATATCATTGCCGTATGAGACAATGAATGAGTTTGAAACTGCATTTTCTTTATGA

Coding sequence (CDS)

ATGCTCAAGGCGTTTAAGGACATGGGATCCGCTTCTGAGGAGAAGGGTCTTGGATTCGCTTCCTTGAGAATTGGTCTGAAACTTGACCAAGAAGAACAACACATAACACACCAAGATATTGTTCAAACATACAGATTGGAGCAGAATGAATTGCCTCAGAAGGTTTTGAAGAACTGGGGCCTTAAGTCCGATTGGCATCGTAGGACTCCCAACTCAAGGATGAAAAAATGGCAGATGCAAAGAGATGTTTGGAGATTGCTTGTGGAAATTCTTGACAAGAAAGAGGCCAGTTCTCGAATGGAAGCTGCTGTGGCATATTTGGAAATATCATTGCCGTATGAGACAATGAATGAGTTTGAAACTGCATTTTCTTTATGA

Protein sequence

MLKAFKDMGSASEEKGLGFASLRIGLKLDQEEQHITHQDIVQTYRLEQNELPQKVLKNWGLKSDWHRRTPNSRMKKWQMQRDVWRLLVEILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL

Homology

[Close]

BLAST of Spg013687 vs. NCBI nr
Match: RVX19205.1 (hypothetical protein CK203_008866 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 66/240 (27.50%), Postives = 89/240 (37.08%), Query Frame = 0


Query: 1   MLKAFKDMGSASEEKGLGFASLRIGLKLDQEEQH-------------------------- 60
           MLKAF++M S+ +EK LG ASL++GLK+DQEE+                           
Sbjct: 114 MLKAFQEMESSFDEKELGLASLKLGLKMDQEEEEGSCSVDDIRPVLHAVQLELANVKTAV 173

Query: 61  -----------------------------ITHQDIVQTY-----------------RLEQ 120
                                          ++D+ + +                  LEQ
Sbjct: 174 GRREEALVNLTKCLEIKEMTLEKDSKELGAAYRDLAEAHTAATSWVVYTGLEEHQKALEQ 233

Query: 121 NELPQKVLKNWGLKSDWHR---------------------------RTPNS--------- 126
           NEL QKVLKNWGL S+  R                           RT            
Sbjct: 234 NELSQKVLKNWGLSSELLRAEIDAANMQIALGKYDEAINTLKGVVQRTDKESENRALVFI 293

[Close]

BLAST of Spg013687 vs. NCBI nr
Match: MBA0590022.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 47/96 (48.96%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNSRMKKWQMQ-------------RDVWRLL---VE 105
           LEQNEL QK+LKNWGL S+  R    S +    MQ             +D  R L     
Sbjct: 153 LEQNELSQKILKNWGLSSELLR----SEIDAANMQIALGKYDEAINTLKDSKRCLEIACG 212

Query: 106 ILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL 126
           ILDKKE  S +E A AY EIS+ YETMNEFE A SL
Sbjct: 213 ILDKKETVSPIEVAEAYSEISMQYETMNEFEIAISL 244

[Close]

BLAST of Spg013687 vs. NCBI nr
Match: MBA0832082.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 47/96 (48.96%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNSRMKKWQMQ-------------RDVWRLL---VE 105
           LEQNEL QK+LKNWGL S+  R    S +    MQ             +D  R L     
Sbjct: 8   LEQNELSQKILKNWGLSSELLR----SEIDAANMQIALGKYDEAINTLKDSKRCLEIACG 67

Query: 106 ILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL 126
           ILDKKE  S +E A AY EIS+ YETMNEFE A SL
Sbjct: 68  ILDKKETVSPIEVAEAYSEISMQYETMNEFEIAISL 99

[Close]

BLAST of Spg013687 vs. NCBI nr
Match: KAG7014584.1 (Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.6 bits (148), Expect = 5.5e-06
Identity = 46/123 (37.40%), Postives = 55/123 (44.72%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNS--------------------------------- 105
           LEQNEL QKVLKNWGL SD  R   ++                                 
Sbjct: 329 LEQNELSQKVLKNWGLNSDLLRAEIDAANMQIALGRFDEAISTLKDVVQHTEKDSETQAV 388

Query: 106 ----------RMKKWQMQRDVWRLLVEILDKKEASSRMEAAVAYLEISLPYETMNEFETA 126
                       +K+   +    +   I DKKEASS +EAA AY EIS+ YE+MNEFETA
Sbjct: 389 VFISMGKVLHNQEKFADAKRCLEIATRIFDKKEASSPVEAAEAYSEISMQYESMNEFETA 448

[Close]

BLAST of Spg013687 vs. NCBI nr
Match: KAG6576067.1 (Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 5.5e-06
Identity = 46/123 (37.40%), Postives = 55/123 (44.72%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNS--------------------------------- 105
           LEQNEL QKVLKNWGL SD  R   ++                                 
Sbjct: 319 LEQNELSQKVLKNWGLNSDLLRAEIDAANMQIALGRFDEAISTLKDVVQHTEKDSETQAV 378

Query: 106 ----------RMKKWQMQRDVWRLLVEILDKKEASSRMEAAVAYLEISLPYETMNEFETA 126
                       +K+   +    +   I DKKEASS +EAA AY EIS+ YE+MNEFETA
Sbjct: 379 VFISMGKVLHNQEKFADAKRCLEIATRIFDKKEASSPVEAAEAYSEISMQYESMNEFETA 438

[Close]

BLAST of Spg013687 vs. ExPASy TrEMBL
Match: A0A438KDC4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_008866 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 66/240 (27.50%), Postives = 89/240 (37.08%), Query Frame = 0


Query: 1   MLKAFKDMGSASEEKGLGFASLRIGLKLDQEEQH-------------------------- 60
           MLKAF++M S+ +EK LG ASL++GLK+DQEE+                           
Sbjct: 114 MLKAFQEMESSFDEKELGLASLKLGLKMDQEEEEGSCSVDDIRPVLHAVQLELANVKTAV 173

Query: 61  -----------------------------ITHQDIVQTY-----------------RLEQ 120
                                          ++D+ + +                  LEQ
Sbjct: 174 GRREEALVNLTKCLEIKEMTLEKDSKELGAAYRDLAEAHTAATSWVVYTGLEEHQKALEQ 233

Query: 121 NELPQKVLKNWGLKSDWHR---------------------------RTPNS--------- 126
           NEL QKVLKNWGL S+  R                           RT            
Sbjct: 234 NELSQKVLKNWGLSSELLRAEIDAANMQIALGKYDEAINTLKGVVQRTDKESENRALVFI 293

[Close]

BLAST of Spg013687 vs. ExPASy TrEMBL
Match: A0A7J9JCD8 (TPR_REGION domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_016492 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.0e-07
Identity = 47/96 (48.96%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNSRMKKWQMQ-------------RDVWRLL---VE 105
           LEQNEL QK+LKNWGL S+  R    S +    MQ             +D  R L     
Sbjct: 8   LEQNELSQKILKNWGLSSELLR----SEIDAANMQIALGKYDEAINTLKDSKRCLEIACG 67

Query: 106 ILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL 126
           ILDKKE  S +E A AY EIS+ YETMNEFE A SL
Sbjct: 68  ILDKKETVSPIEVAEAYSEISMQYETMNEFEIAISL 99

[Close]

BLAST of Spg013687 vs. ExPASy TrEMBL
Match: A0A7J8PMB9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_018741 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.0e-07
Identity = 47/96 (48.96%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNSRMKKWQMQ-------------RDVWRLL---VE 105
           LEQNEL QK+LKNWGL S+  R    S +    MQ             +D  R L     
Sbjct: 153 LEQNELSQKILKNWGLSSELLR----SEIDAANMQIALGKYDEAINTLKDSKRCLEIACG 212

Query: 106 ILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL 126
           ILDKKE  S +E A AY EIS+ YETMNEFE A SL
Sbjct: 213 ILDKKETVSPIEVAEAYSEISMQYETMNEFEIAISL 244

[Close]

BLAST of Spg013687 vs. ExPASy TrEMBL
Match: A0A7J9BZP7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_014750 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 44/101 (43.56%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNSRMKK-----------------WQMQRDVWRLLV 105
           LEQNEL QK+LKNWGL S+  R   ++   +                  Q  +D  +  +
Sbjct: 213 LEQNELSQKILKNWGLSSELLRSEIDAANMQIALGKYDEAINTLKGIVQQTDKDNSKRCL 272

Query: 106 E----ILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL 126
           E    ILDKKE  S +E A AY EIS+ YETMNEFE A SL
Sbjct: 273 EIACGILDKKETVSPIEVAEAYSEISMQYETMNEFEIAISL 313

[Close]

BLAST of Spg013687 vs. ExPASy TrEMBL
Match: A0A7J8XG31 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_013869 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 44/101 (43.56%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNSRMKK-----------------WQMQRDVWRLLV 105
           LEQNEL QK+LKNWGL S+  R   ++   +                  Q  +D  +  +
Sbjct: 185 LEQNELSQKILKNWGLSSELLRSEIDAANMQIALGKYDEAINTLKGIVQQTDKDNSKRCL 244

Query: 106 E----ILDKKEASSRMEAAVAYLEISLPYETMNEFETAFSL 126
           E    ILDKKE  S +E A AY EIS+ YETMNEFE A SL
Sbjct: 245 EIACGILDKKETVSPIEVAEAYSEISMQYETMNEFEIAISL 285

[Close]

BLAST of Spg013687 vs. TAIR 10
Match: AT2G31240.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 9.0e-07
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 0


Query: 46  LEQNELPQKVLKNWGLKSDWHRRTPNS-----RMKKWQMQRDVWRLLV------------ 105
           LEQN L Q+VLKNWG+K +  R   ++      + K++   D+ + +V            
Sbjct: 314 LEQNRLSQRVLKNWGMKLELIRAEIDAANMKVALGKYEEAIDILKSVVQQTDKDSEMRAM 373

Query: 106 --------------------------EILDKKEASSRMEAAVAYLEISLPYETMNEFETA 126
                                     EIL+KKE +  +E A AY E+++ YE+MNEFETA
Sbjct: 374 VFISMSKALVNQQKFAESKRCLEFACEILEKKETALPVEVAEAYSEVAMQYESMNEFETA 433

The following BLAST results are available for this feature:

BLAST of Spg013687 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX19205.1	1.3e-07	27.50	hypothetical protein CK203_008866 [Vitis vinifera]	[more]
MBA0590022.1	1.4e-06	48.96	hypothetical protein [Gossypium raimondii]	[more]
MBA0832082.1	1.4e-06	48.96	hypothetical protein [Gossypium armourianum]	[more]
KAG7014584.1	5.5e-06	37.40	Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6576067.1	5.5e-06	37.40	Protein KINESIN LIGHT CHAIN-RELATED 1, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Spg013687 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KDC4	6.3e-08	27.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_008866 PE=4 SV=1	[more]
A0A7J9JCD8	7.0e-07	48.96	TPR_REGION domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_...	[more]
A0A7J8PMB9	7.0e-07	48.96	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_018741 PE=4 SV=...	[more]
A0A7J9BZP7	2.7e-06	43.56	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_014750 PE=4 ...	[more]
A0A7J8XG31	2.7e-06	43.56	Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_013869 PE=4 SV=1	[more]

BLAST of Spg013687 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31240.1	9.0e-07	31.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013687.1	Spg013687.1	mRNA