Spg013486 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCTGTTTGGTTTGGTGAGTCGGTTTTAATTTCTCACAGTCACACAGATTCGTAAAAAAGTAGAGACGGAAAAGAGATCATATCATATTCATATGGCAGCAGCTGCAGAGGGACGAGTCATCCGCTGTAACTCCATTGATTCATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAGGAACTGGTAAAACTCCATTTCTTACAAATTTCCTTCACTGCTTCTCCATCATTATATTCCCTTTGCATATATGATCCTCTCTGTTTTGGCATTACTCTCGATTTGATTGCCAGTATGTTAATTGATTTCAATGCATCGCCATTACTTGATTTGATCGGCGCCACAGTCTGTTGTATTTCAAAATCATATTGATATGCTCGAGAAAACTTCACTTTTCCATCCTTTTTTCTTTGCTTTTCTGCTAATATGGTAGAAAAAGTGCTACTAATCAATCAAAGTGTGAAATGTTTCGAATCTTTCCTGCTTCCTTTTCTTTATTGAACAATCAATATCATTTTTGTCTCCCACTTATTGCTTTCCAGACCAAACAAATTTGGATACATCTGTAGTGTATATTTAGATCATTATACGAAGTCAAGCCAATCCAATCCAATCCTTGACTAAATTTCACCACCAATCATTTTCTCACCAGAAATTTTCATGTAGTAGGGACTACCAATTATTGAGTACTTGACATTTGAACTCACTGTACGTGCCATGTAGTTGGATTTTTTTTGTTCATGAGTACTACTGCTGTAACTGATGCAGATAGTTGTGGATTTCACTGCATCATGGTGCGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTGGAGGTACTCTAAATTATAATTTATAAATCCCCCACTTGCTTTTTTCTCTCTCTCTCTGTGTGGCCTTTGTTAAAATGTGATGATTGTTGCAGTCGGTAGCTAAAGATTGGGGAGTGGAGGCAATGCCTACTTTCATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTTGTGGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCACATGGCTGCTACTGCATCTGCCTGATCGACCATTGGGCTCTGAAGTAGGGATATAAAGAACTTAATTATACTATGAAACCGCTATAATTTTCTATACTTGGTTACAATTCCTATCCGCTCGCTTTGTTGTTAGAACATGGTATATTCTCCCTTTTCAAGTGGCTTTTATTGTTTGTCTTTTCTTCTTTCTTGAAGTTGAAAAACATTGTCCTTGTTGCATTAGTATAATTGTGGGAATCTCCTATTCAATGGGGCCATGTTTGGACTCGTGAACACTAATTTTCTCCATAAAGCTGAAAGGAAAAGAAATCGATTTCTCTAGGA ATGGCAGCAGCTGCAGAGGGACGAGTCATCCGCTGTAACTCCATTGATTCATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAGGAACTGATAGTTGTGGATTTCACTGCATCATGGTGCGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTGGAGTCGGTAGCTAAAGATTGGGGAGTGGAGGCAATGCCTACTTTCATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTTGTGGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCACATGGCTGCTACTGCATCTGCCTGA ATGGCAGCAGCTGCAGAGGGACGAGTCATCCGCTGTAACTCCATTGATTCATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAGGAACTGATAGTTGTGGATTTCACTGCATCATGGTGCGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTGGAGTCGGTAGCTAAAGATTGGGGAGTGGAGGCAATGCCTACTTTCATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTTGTGGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCACATGGCTGCTACTGCATCTGCCTGA MAAAAEGRVIRCNSIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATASA Homology
BLAST of Spg013486 vs. NCBI nr
Match: KAG6603933.1 (hypothetical protein SDJN03_04542, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034113.1 hypothetical protein SDJN02_03840, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Spg013486 vs. NCBI nr
Match: XP_022950147.1 (thioredoxin H-type-like [Cucurbita moschata]) HSP 1 Score: 237.7 bits (605), Expect = 5.4e-59 Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Spg013486 vs. NCBI nr
Match: XP_022977568.1 (thioredoxin H-type [Cucurbita maxima]) HSP 1 Score: 237.7 bits (605), Expect = 5.4e-59 Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0
BLAST of Spg013486 vs. NCBI nr
Match: XP_023543830.1 (thioredoxin H-type-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.9 bits (603), Expect = 9.2e-59 Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Spg013486 vs. NCBI nr
Match: XP_023517738.1 (thioredoxin H-type [Cucurbita pepo subsp. pepo]) HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58 Identity = 112/120 (93.33%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 4.1e-46 Identity = 83/117 (70.94%), Postives = 105/117 (89.74%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.9e-43 Identity = 76/113 (67.26%), Postives = 98/113 (86.73%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.9e-43 Identity = 81/117 (69.23%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 3.2e-38 Identity = 71/119 (59.66%), Postives = 97/119 (81.51%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy Swiss-Prot
Match: Q39241 (Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 3.3e-35 Identity = 64/117 (54.70%), Postives = 92/117 (78.63%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy TrEMBL
Match: A0A6J1IQD5 (thioredoxin H-type OS=Cucurbita maxima OX=3661 GN=LOC111477862 PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59 Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy TrEMBL
Match: A0A6J1GE02 (thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453323 PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59 Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy TrEMBL
Match: A0A6J1HER7 (thioredoxin H-type OS=Cucurbita moschata OX=3662 GN=LOC111463317 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57 Identity = 111/120 (92.50%), Postives = 118/120 (98.33%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy TrEMBL
Match: A0A6J1KSA6 (thioredoxin H-type-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496792 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 9.2e-57 Identity = 110/120 (91.67%), Postives = 117/120 (97.50%), Query Frame = 0
BLAST of Spg013486 vs. ExPASy TrEMBL
Match: A0A6J1BTW6 (thioredoxin H-type OS=Momordica charantia OX=3673 GN=LOC111005317 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 6.0e-56 Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 0
BLAST of Spg013486 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 ) HSP 1 Score: 176.4 bits (446), Expect = 1.4e-44 Identity = 76/113 (67.26%), Postives = 98/113 (86.73%), Query Frame = 0
BLAST of Spg013486 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 ) HSP 1 Score: 149.1 bits (375), Expect = 2.3e-36 Identity = 64/117 (54.70%), Postives = 92/117 (78.63%), Query Frame = 0
BLAST of Spg013486 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein ) HSP 1 Score: 145.6 bits (366), Expect = 2.6e-35 Identity = 68/118 (57.63%), Postives = 88/118 (74.58%), Query Frame = 0
BLAST of Spg013486 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 ) HSP 1 Score: 135.6 bits (340), Expect = 2.7e-32 Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 0
BLAST of Spg013486 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 ) HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25 Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|