Spg012092 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012092
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein PLANT CADMIUM RESISTANCE like
Location	scaffold1: 3554696 .. 3558049 (-)
RNA-Seq Expression	Spg012092
Synteny	Spg012092

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACACCATAAAGGCAACTTCCGAACAGATTAAACCAATTTTGGAATAAATAGTTTTGTTTTGCGGATTTCGGAGCCAAGCGTTTCCAGAGCCTACACAAAACCCTAACTTTTTTTACTTTTTTGGGCGTTCTAATGGCGGATTTGGAGAAGCAGGAGAGGGTCGTTGGGAATGCCTTTGTTGCAGACGAGGAGGACAAGTTTCTCGAGGGGGTTACGTTATTGGATTTCGACATGCTGTGTTCGACGGTGGCTATGCAGACGCAGGGCAAATGGTCCGAGTTGGACAATACTGAAGATGCTAAAACGGGACCCGAATTCAGTGGGGTTTTCAGGATGTGGGAAGGTGAACTACTCGATTGCTTCGAGGACCGTCGCATCGCTATTGAATCGGCATGGTTAGACTCACTCATCCACCTTTTCTTTCCCCTCTCTATTCAGCTTTTTCAGGGATTCTTTTGGGGGAAACTTTATAGCAGCTGCAGAAATTATTTCGTTTATGTTTGTTGTTTTTTTTGTTTTTTTTTGTTTTTTTGAGAATTTTTTCGTCAGAGGGAAGGGTTCTTTTTTCCTTTTAGGGTGGGCAGAGGGATTGTTTGGTTGGGCAAAGAATCGATTTCTTCTTAGGTTGAGTTTTCTCTTCAAAAAAGGTTTTGACCGTGATATTTTCATTTTTAGTTGGAATATGTCTTTCAGGCTTCAATTGCGAGTCTAAAAAAGTTTCTGTGCACGATTTGTCCTCATGGTTTCGGAGTACCTGCGTGTGGTTGTGGTTATCTAATTGGGGATTTGTGTTTTGTTATGCTAAAGTTTGAAATTGTAACTAAGATTGATAATTTTCTGTGAATGGAATATTTGCTATATGTAGTAACATGGCTTGTCTTAATGATGCAGCTGTCCGTGTCACAGATTTGGGAAGAATATGGGAAGGGCTGGGTTTGGCTCTTGTTTTCTTCAGGTAAACTTTTTCTTGGCTGCTTGTACCTTTGAAAAGAGAGGGGAAGAAATTAGATTACAGTTTTCTTTGCTCATCAAATTTTCGTAATGCATAGTCTGCACTTCTTTACTTTTGAAAATATACTAGTTGCTATAATCTTGAATAACAATTTTGCAGGGAACCGTTTATTTTGCTCTTGCTCTTGGTGCCCTTTGCAACTTCATTGCCTTTTTGATCACGAAACGCCATTACTTTTTATATTCAGCAATTGCTTTCACCGTTTCAACTGTAACATATTTGGGGTTCTTCCGCACCCAGATGAGGAGGAAATTCAATATAAGGGTGAGACTTCTTTTTCTATCAGCCTTTTGATATTCTCTGTTTCCTATTTCTACTTGCTAATTAGTGGATTGTAACACATTCTATTTCTAGAATGCTTAAGTTGTTGTGCTCTAAATTCGTCTTTTGCCTTTTCTGATCAATTAGTTTATTTCCTTCTTTTTCTATATTCAAGTTATGGTCGATTCTGTTGTGGAGTGGCCCCTTTGTCATCTTCTATGATGTCTCAATCTTCATATTTTTTCTACTATTGGTTTCTATGTTTTATAGTAGTTGCTGTAGGCAAAACTTAATTAAGACTGACAGTCAAACTAAGGCAATTCACTTCCTTTTTGTTATGAGATTGTGCAACTGAGGAGTTAGTTGATAGTCATAAATAGTTGTATGGAAAGGCATTGAAATTTGAATGACTAATAGTACTTAGAAAGAGACGACTGGTCAGAGAGATTTTACTAACAGTGTGTAGTTAGAGACTTGTAAGAGTAAAAGTTTACCAATAGTGTGTAGCAAGAAACTTGTAAGAGTAAGTTTACTAATAGTGTGTGGAGAGATAAACTCGTAAGAGATGGCGTGTGTGAATAGAGAGATTAATGAGAGAGTACATATGTGAAAGAAACTATTGATAGAAGTTGTATAGACAAAGTGTATGTGCATGTAATGTGAAGTTAGTACGACAAAATTTGTGTAGAGAGAGGTTATTGAGAATAGTAAGTAGAGAGAAATTTGTGAAAGAGATAACATGTGCCTCAAGAATAATTAGGGAAAGAAAGTGTGTCATGAGAGATTTAGGACAAAGTGTTTAAGGCAAAAGCAGTTGATATAGCGTTTTAGCAACTATGTCTTTTTGCAACGAAATGTAGTAGAATTAGACTTTACTTTTGCGTAGAAAGTCCTACTCATTTTGATGATGTAATTATTGCTTGTAAAATAGATAGAAATTATGTCATTTTCATCCCATTTTTTACTATCTTTGAGGTGACCATTTTTTTTGCTTCCTTGTGCATATGTTTATTCATATCTGGTTTAAACTTATAGGTATTTTGTCAGCTTTCTCATTAATATTGTCAAAGATAATCTTGGCGGTGTGATCCTTAGTGGCTAATGTGTAGATTAATGTTTATTAATGTTGCAGGGTGGAGATAGTTCCTTGGATGACTGCATCTACCACCTTATCTGCCCCTGCTGCGCTTTATCTCAGGTTTGTATTTCAAAACTTGCATATCAAAACCTTATATTCATATTTAGCTTCCTACCTCTGTCATCTTGTGTAAGCAACCTAAACTAACATATTCAATCGTCACCAATATAATTGTAACTGTTGAGTAGGAATCGCGAACACTGGAAATGAATAACGTTCAAGATGGCACATGGCACGGTCGCGGTGACACAATATGTATAGGTAGTTATGGTGATGCCAGCCGATTTGTTGAGCTAAACCCACCTGTTCCTGTCTCAACCAAATCTCCTGAAACCTGCGGCATATTAAAGGATGTGGCAACTCAAGATCACTCTTGAACCTGACCTGCCTGTGCGTGCAGCAACATATCGGTAGCTCCGCCTGTGACCTATGCTTTCGAGATCCTCCATCTGATTTAAAACCGAAGATACATGACACACTGCCTTGTTTCAGCAACTTTTCTCCCAAGTGATGAGGGTTCAGTAATTGGAGATGTTGTTGCTGCTTTTCTTTAGGGGTGTGGCCTTCCAAAACTGGTTAGGCTGCACTTTGGTGCCATGGAGATGTGGTCTTTGAGGGTCGATATTAGAGGTTGGGGGTTGAAAAGGACTCCTTTCTTGGATGAAGATTTTCTTCTTTTTTTTTTTTCTTTTTTCTCTTTTCTTTTGTTATTCTACCATTGTGAAAATATCCATGGTAGCGACTAGCGTGTTCTGGTCGTGTTAAAAAAACATCTTTAAACTTGTACATACTATACCAAAGTTTTATGTATCAAATCAATTAGATGTATGCAGCCCTTGAACATGGCTGTTTCAATGTTTATTCCTCGTAAAATCATTTTTAAAATAGTCATACCATAAATTCTAATCA

mRNA sequence

ATGTTGCAGGGTGGAGATAGTTCCTTGGATGACTGCATCTACCACCTTATCTGCCCCTGCTGCGCTTTATCTCAGGAATCGCGAACACTGGAAATGAATAACGTTCAAGATGGCACATGGCACGGTCGCGGTGACACAATATGTATAGGTAGTTATGGTGATGCCAGCCGATTTGTTGAGCTAAACCCACCTGTTCCTGTCTCAACCAAATCTCCTGAAACCTGCGGCATATTAAAGGATGTGGCAACTCAAGATCACTCTTGA

Coding sequence (CDS)

ATGTTGCAGGGTGGAGATAGTTCCTTGGATGACTGCATCTACCACCTTATCTGCCCCTGCTGCGCTTTATCTCAGGAATCGCGAACACTGGAAATGAATAACGTTCAAGATGGCACATGGCACGGTCGCGGTGACACAATATGTATAGGTAGTTATGGTGATGCCAGCCGATTTGTTGAGCTAAACCCACCTGTTCCTGTCTCAACCAAATCTCCTGAAACCTGCGGCATATTAAAGGATGTGGCAACTCAAGATCACTCTTGA

Protein sequence

MLQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVELNPPVPVSTKSPETCGILKDVATQDHS

Homology

[Close]

BLAST of Spg012092 vs. NCBI nr
Match: XP_004134741.1 (cell number regulator 5 [Cucumis sativus] >KGN49171.1 hypothetical protein Csa_002709 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL
Sbjct: 165 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 224

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP+PVSTK PE CG LKDVA Q+HS
Sbjct: 225 NPPLPVSTKLPEACGTLKDVANQNHS 250

[Close]

BLAST of Spg012092 vs. NCBI nr
Match: XP_023544493.1 (uncharacterized protein LOC111804053 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.3 bits (438), Expect = 9.0e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYG+ASRFVEL
Sbjct: 163 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGEASRFVEL 222

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP PVSTKS E CGILKDVA  DHS
Sbjct: 223 NPPDPVSTKSSEACGILKDVANHDHS 248

[Close]

BLAST of Spg012092 vs. NCBI nr
Match: XP_022950802.1 (protein PLANT CADMIUM RESISTANCE 10-like [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 9.0e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYG+ASRFVEL
Sbjct: 163 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGEASRFVEL 222

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP PVSTKS E CGILKDVA  DHS
Sbjct: 223 NPPDPVSTKSSEACGILKDVANHDHS 248

[Close]

BLAST of Spg012092 vs. NCBI nr
Match: XP_022926698.1 (uncharacterized protein LOC111433749 [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGDS LDDC+ HLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL
Sbjct: 158 IRGGDSYLDDCVNHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 217

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP PVSTKSPETCGI+KDV  +DHS
Sbjct: 218 NPPSPVSTKSPETCGIVKDVPNRDHS 243

[Close]

BLAST of Spg012092 vs. NCBI nr
Match: XP_023517787.1 (uncharacterized protein LOC111781437 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGDS LDDC+ HLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL
Sbjct: 158 IRGGDSYLDDCVNHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 217

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP PVSTKSPETCGI+KDV  +DHS
Sbjct: 218 NPPSPVSTKSPETCGIVKDVPNRDHS 243

[Close]

BLAST of Spg012092 vs. ExPASy TrEMBL
Match: A0A0A0KN60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516790 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL
Sbjct: 165 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 224

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP+PVSTK PE CG LKDVA Q+HS
Sbjct: 225 NPPLPVSTKLPEACGTLKDVANQNHS 250

[Close]

BLAST of Spg012092 vs. ExPASy TrEMBL
Match: A0A6J1GFW1 (protein PLANT CADMIUM RESISTANCE 10-like OS=Cucurbita moschata OX=3662 GN=LOC111453800 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.4e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYG+ASRFVEL
Sbjct: 163 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGEASRFVEL 222

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP PVSTKS E CGILKDVA  DHS
Sbjct: 223 NPPDPVSTKSSEACGILKDVANHDHS 248

[Close]

BLAST of Spg012092 vs. ExPASy TrEMBL
Match: A0A6J1EIX8 (uncharacterized protein LOC111433749 OS=Cucurbita moschata OX=3662 GN=LOC111433749 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.4e-40
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGDS LDDC+ HLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL
Sbjct: 158 IRGGDSYLDDCVNHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 217

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP PVSTKSPETCGI+KDV  +DHS
Sbjct: 218 NPPSPVSTKSPETCGIVKDVPNRDHS 243

[Close]

BLAST of Spg012092 vs. ExPASy TrEMBL
Match: A0A1S3AZI4 (uncharacterized protein LOC103484568 OS=Cucumis melo OX=3656 GN=LOC103484568 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.7e-40
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGD SRFVEL
Sbjct: 164 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDPSRFVEL 223

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           NPP+PVSTK PE CG LKDVA ++HS
Sbjct: 224 NPPLPVSTKLPEACGTLKDVANENHS 249

[Close]

BLAST of Spg012092 vs. ExPASy TrEMBL
Match: A0A6J1II90 (protein PLANT CADMIUM RESISTANCE 10-like OS=Cucurbita maxima OX=3661 GN=LOC111477715 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-39
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++GGD+SLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYG+ASRFVEL
Sbjct: 163 IRGGDNSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGEASRFVEL 222

Query: 62  NPPVPVSTKSPETCGILKDVATQDHS 88
           N P PVSTKS E CGILKDVA  DHS
Sbjct: 223 NKPDPVSTKSSEACGILKDVANHDHS 248

[Close]

BLAST of Spg012092 vs. TAIR 10
Match: AT1G11380.1 (PLAC8 family protein )

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-22
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 2   LQGGDSSLDDCIYHLICPCCALSQESRTLEMNNVQDGTWHGRGDTICIGSYGDASRFVEL 61
           ++G DS LDD I+HL+CP C L+QES+TLEMNNV DG WHGRGDT+CIG Y +   F+EL
Sbjct: 180 IRGTDSFLDDFIHHLVCPFCTLTQESKTLEMNNVHDGIWHGRGDTLCIGGYSEGKAFLEL 239

Query: 62  -NPPVPVSTKS 72
            +PPV  ST S
Sbjct: 240 HSPPVIASTMS 250

[Close]

BLAST of Spg012092 vs. TAIR 10
Match: AT1G52200.1 (PLAC8 family protein )

HSP 1 Score: 40.4 bits (93), Expect = 8.5e-04
Identity = 15/38 (39.47%), Postives = 24/38 (63.16%), Query Frame = 0


Query: 6   DSSLDDCIYHLICPCCALSQESRTLEMNNVQDGT-WHG 43
           ++   DC  H++CPCC+L QE R L++ N+     W+G
Sbjct: 128 EAPYSDCASHVLCPCCSLCQEYRELKIRNLDPSLGWNG 165

The following BLAST results are available for this feature:

BLAST of Spg012092 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134741.1	2.4e-40	89.53	cell number regulator 5 [Cucumis sativus] >KGN49171.1 hypothetical protein Csa_0...	[more]
XP_023544493.1	9.0e-40	89.53	uncharacterized protein LOC111804053 [Cucurbita pepo subsp. pepo]	[more]
XP_022950802.1	9.0e-40	89.53	protein PLANT CADMIUM RESISTANCE 10-like [Cucurbita moschata]	[more]
XP_022926698.1	1.5e-39	88.37	uncharacterized protein LOC111433749 [Cucurbita moschata]	[more]
XP_023517787.1	1.5e-39	88.37	uncharacterized protein LOC111781437 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg012092 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg012092 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN60	1.1e-40	89.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516790 PE=4 SV=1	[more]
A0A6J1GFW1	4.4e-40	89.53	protein PLANT CADMIUM RESISTANCE 10-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1EIX8	7.4e-40	88.37	uncharacterized protein LOC111433749 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A1S3AZI4	9.7e-40	87.21	uncharacterized protein LOC103484568 OS=Cucumis melo OX=3656 GN=LOC103484568 PE=...	[more]
A0A6J1II90	3.7e-39	88.37	protein PLANT CADMIUM RESISTANCE 10-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Spg012092 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11380.1	1.8e-22	63.38	PLAC8 family protein	[more]
AT1G52200.1	8.5e-04	39.47	PLAC8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006461	PLAC8 motif-containing protein	PANTHER	PTHR15907	DUF614 FAMILY PROTEIN-RELATED	coord: 7..53
None	No IPR available	PANTHER	PTHR15907:SF118	DUF614 FAMILY PROTEIN	coord: 7..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012092.1	Spg012092.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane