Spg011660 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011660
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold1: 2874006 .. 2874470 (-)
RNA-Seq ExpressionSpg011660
SyntenySpg011660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGTGGCCTGGAAATTGGGCTTCCCTGACACTGGTATTGGAGTTGTCTGCAGAAATGATGTCGGCAACATTACTGGAGCCTCCGCGATTTTATGAAGAACTTGATTATCCTCCCCGGATGGCTGAGTTGAGGGCGATTTTGGAGGGCTTGATCTTTGCGGAAAGGAGGGGTTACATGCATATTCTGGTTGAATCTGATTGCCTCCAGGCTATCAATTTGATCTCCATGGAAGAAGAAGTCAGGAACGAGACTTTAGTTGATGTTATTAGAAGGAAAGCTTCTTTTTTCACTGATATTCAATTTTCATATAGCCAGCGTAATTCCAACTTGGTAGCTGATGCTATTGCCAAATGGGCTAGAGTGGAAAGGAAGAGTTATGAGTGGGTCCATTTTTTTCCTGAGTGGCTTTGTACGTTGGTCTTTAATGACCAGATTTCTGCTGCCCAAGTGACATTTTAA

mRNA sequence

ATGTTGATGTGGCCTGGAAATTGGGCTTCCCTGACACTGGTATTGGAGTTGTCTGCAGAAATGATGTCGGCAACATTACTGGAGCCTCCGCGATTTTATGAAGAACTTGATTATCCTCCCCGGATGGCTGAGTTGAGGGCGATTTTGGAGGGCTTGATCTTTGCGGAAAGGAGGGGTTACATGCATATTCTGGTTGAATCTGATTGCCTCCAGGCTATCAATTTGATCTCCATGGAAGAAGAAGTCAGGAACGAGACTTTAGTTGATGTTATTAGAAGGAAAGCTTCTTTTTTCACTGATATTCAATTTTCATATAGCCAGCGTAATTCCAACTTGGTAGCTGATGCTATTGCCAAATGGGCTAGAGTGGAAAGGAAGAGTTATGAGTGGGTCCATTTTTTTCCTGAGTGGCTTTGTACGTTGGTCTTTAATGACCAGATTTCTGCTGCCCAAGTGACATTTTAA

Coding sequence (CDS)

ATGTTGATGTGGCCTGGAAATTGGGCTTCCCTGACACTGGTATTGGAGTTGTCTGCAGAAATGATGTCGGCAACATTACTGGAGCCTCCGCGATTTTATGAAGAACTTGATTATCCTCCCCGGATGGCTGAGTTGAGGGCGATTTTGGAGGGCTTGATCTTTGCGGAAAGGAGGGGTTACATGCATATTCTGGTTGAATCTGATTGCCTCCAGGCTATCAATTTGATCTCCATGGAAGAAGAAGTCAGGAACGAGACTTTAGTTGATGTTATTAGAAGGAAAGCTTCTTTTTTCACTGATATTCAATTTTCATATAGCCAGCGTAATTCCAACTTGGTAGCTGATGCTATTGCCAAATGGGCTAGAGTGGAAAGGAAGAGTTATGAGTGGGTCCATTTTTTTCCTGAGTGGCTTTGTACGTTGGTCTTTAATGACCAGATTTCTGCTGCCCAAGTGACATTTTAA

Protein sequence

MLMWPGNWASLTLVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFNDQISAAQVTF
Homology
BLAST of Spg011660 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 49/136 (36.03%), Postives = 66/136 (48.53%), Query Frame = 0

Query: 13   LVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQA 72
            ++ + S  +++AT +  P         P +AE+R ILEGL FA    + H+ VESD L A
Sbjct: 1320 IIRDSSCSLVAATSIRVP-----FPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLA 1379

Query: 73   INLISMEEEVR--NETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVE-RKSYE 132
            I LI  E   R   +  V  I+     F  I FS+S R  N  A  +AKW       +Y 
Sbjct: 1380 IQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYA 1439

Query: 133  WVHFFPEWLCTLVFND 146
            W+  FP WL  LV  D
Sbjct: 1440 WLFNFPTWLLDLVQRD 1450

BLAST of Spg011660 vs. NCBI nr
Match: XP_027064446.1 (uncharacterized protein LOC113690648 [Coffea arabica] >XP_027158544.1 uncharacterized protein LOC113760174 [Coffea eugenioides])

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-08
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 40  PRMAELRAILEGLIFAERRGYMHILVESDC---LQAINLISMEEEVRNETLVDVIRRKAS 99
           P + E + I + L  A+++G+  +L++SDC   +  IN    E+      L D+++ +  
Sbjct: 41  PAVEEAQDIRQALNIAKQKGWRKVLIQSDCKGIIDKINARKAEDPHIGVILFDILKLR-Q 100

Query: 100 FFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFND 146
            FT+  FS+ +R  N VA  +AK+A      +EW  FFP+WL +L  ND
Sbjct: 101 VFTECSFSFIKREGNFVAHHLAKFAINLMNDFEWQEFFPDWLTSLARND 148

BLAST of Spg011660 vs. NCBI nr
Match: XP_027101192.1 (uncharacterized protein LOC113720678 [Coffea arabica] >XP_027115614.1 uncharacterized protein LOC113733445 [Coffea arabica])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-07
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 40  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEE-EVRNETLVDVIRRKASFF 99
           P+M E  A+   ++ A+++G+  +  ESDC   I+ I+ EE +V   T++  I+R    F
Sbjct: 342 PKMEEALALRAAMLVAKQQGWRRVEFESDCKYVIDRINSEEDDVEIATVLSDIKRLKLSF 401

Query: 100 TDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFND 146
            +  FS+++R SN V+  IAK+A    K+ EW   FP WL  LV  D
Sbjct: 402 YECCFSFTRRESNSVSHHIAKFAINLEKTAEWKFDFPAWLLDLVQAD 448

BLAST of Spg011660 vs. NCBI nr
Match: XP_010693676.1 (PREDICTED: uncharacterized protein LOC104906600 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-07
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 42  MAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASF---F 101
           MAEL  I+EGL  A+R G+ ++L+ SD LQAINLIS  +++ N+   +V+++  +    F
Sbjct: 276 MAELLGIIEGLALAKRGGFDYVLILSDSLQAINLISC-DKIFNDVYCNVLKKCRACKQEF 335

Query: 102 TDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFP 136
            DIQF++ +R  N VAD +A+  R + ++   V   P
Sbjct: 336 KDIQFTFVKREKNKVADFLARDCRRDVRNLNVVRDLP 371

BLAST of Spg011660 vs. NCBI nr
Match: XP_026434339.1 (uncharacterized protein LOC113331914 [Papaver somniferum])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 31/110 (28.18%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 40  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASFFT 99
           P  AE +A+LE +++A+++G   + +E DCL  I++++        T  ++I+      +
Sbjct: 193 PEQAEAQALLEAVLWAKQKGLTKLQLEGDCLNVISVVNGSLTAVKWTTHNLIKDALDILS 252

Query: 100 DIQF---SYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFNDQ 147
              F   +Y  R++N +AD++AK+AR +   +++ + FP W+ TL+  D+
Sbjct: 253 SFSFWSCTYVHRDANHIADSLAKFARSQIICFQYYNDFPAWIQTLIQQDK 302

BLAST of Spg011660 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-10
Identity = 49/136 (36.03%), Postives = 66/136 (48.53%), Query Frame = 0

Query: 13   LVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQA 72
            ++ + S  +++AT +  P         P +AE+R ILEGL FA    + H+ VESD L A
Sbjct: 1320 IIRDSSCSLVAATSIRVP-----FPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLA 1379

Query: 73   INLISMEEEVR--NETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVE-RKSYE 132
            I LI  E   R   +  V  I+     F  I FS+S R  N  A  +AKW       +Y 
Sbjct: 1380 IQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYA 1439

Query: 133  WVHFFPEWLCTLVFND 146
            W+  FP WL  LV  D
Sbjct: 1440 WLFNFPTWLLDLVQRD 1450

BLAST of Spg011660 vs. ExPASy TrEMBL
Match: A0A6P6SF66 (uncharacterized protein LOC113690648 OS=Coffea arabica OX=13443 GN=LOC113690648 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 40  PRMAELRAILEGLIFAERRGYMHILVESDC---LQAINLISMEEEVRNETLVDVIRRKAS 99
           P + E + I + L  A+++G+  +L++SDC   +  IN    E+      L D+++ +  
Sbjct: 41  PAVEEAQDIRQALNIAKQKGWRKVLIQSDCKGIIDKINARKAEDPHIGVILFDILKLR-Q 100

Query: 100 FFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFND 146
            FT+  FS+ +R  N VA  +AK+A      +EW  FFP+WL +L  ND
Sbjct: 101 VFTECSFSFIKREGNFVAHHLAKFAINLMNDFEWQEFFPDWLTSLARND 148

BLAST of Spg011660 vs. ExPASy TrEMBL
Match: A0A2P6R2K8 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0437761 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 39  PPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDV--IRRKAS 98
           PPR AEL AI  GL FA  +G+  ++VE DCL+ +NL+S EEE  +E  V    ++R   
Sbjct: 40  PPRTAELFAIKIGLEFALEKGWSALVVECDCLEVVNLLSKEEECMSEDGVVAWEVQRLLV 99

Query: 99  FFTDIQFSYSQRNSNLVADAIAKW-ARVERKSYEWVHFFPEWLCTLVFND 146
            F   +  +  R  N  A  +A+  ARVE + + W+   P WL  ++ +D
Sbjct: 100 RFQHARIVFGPREVNRAAHMVAQHVARVEGR-FCWLGVGPPWLMQVIDDD 148

BLAST of Spg011660 vs. ExPASy TrEMBL
Match: A0A6P6SJS0 (uncharacterized protein LOC113692152 OS=Coffea arabica OX=13443 GN=LOC113692152 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 0

Query: 40  PRMAELRAILEGLIFAERRGYMHILVESD---CLQAINLISMEEEVRNETLVDVIRRKAS 99
           P + E  AI + L  A+++G+  +L++SD    +  IN    E+      L D+++ +  
Sbjct: 122 PVVEEALAIRQALNIAKQKGWRKVLIQSDYKGIIDKINARKAEDPNIGVILFDILKLR-Q 181

Query: 100 FFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFND 146
            FT+  FS+ +R  N VA  +AK+A      +EW   FPEWL +L  ND
Sbjct: 182 VFTECSFSFIKREGNFVAHHLAKFAINLMNDFEWQDSFPEWLTSLARND 229

BLAST of Spg011660 vs. ExPASy TrEMBL
Match: J7G0Q7 (Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-06
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 42   MAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEE--VRNETLVDVIRRKASFFT 101
            +AEL AI  GL     R   +I+VESDCL+AI+L++ +E        LV+ I+   +   
Sbjct: 1542 VAELLAIKVGLDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVN 1601

Query: 102  DIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFNDQISA 150
                 + +R  N  A AIAK+       Y W+   P+WL +L+ +D+  A
Sbjct: 1602 ISSIYHVRREGNTAAHAIAKFVARNNGRYVWLEDGPDWLMSLICHDKTLA 1651

BLAST of Spg011660 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-07
Identity = 36/107 (33.64%), Postives = 51/107 (47.66%), Query Frame = 0

Query: 40  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRN-ETLVDVIRRKASFF 99
           P  AE +A+L  L     RGY+ +++E DC    NL+S      +   L+D IR  A  F
Sbjct: 63  PLEAETKALLAALQQTWIRGYLRVIMEGDCETLTNLVSGSSSHNHLANLLDDIRIWAKKF 122

Query: 100 TDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLCTLVFND 146
           +++QFS+ +R  N VA  +AK        Y      P WL     ND
Sbjct: 123 SNVQFSFVRRGGNKVAHELAKLGCNSTCFYSDSCTLPIWLHQHYCND 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.11.0e-0936.03uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_027064446.15.5e-0833.03uncharacterized protein LOC113690648 [Coffea arabica] >XP_027158544.1 uncharacte... [more]
XP_027101192.11.6e-0736.45uncharacterized protein LOC113720678 [Coffea arabica] >XP_027115614.1 uncharacte... [more]
XP_010693676.18.0e-0739.18PREDICTED: uncharacterized protein LOC104906600 [Beta vulgaris subsp. vulgaris][more]
XP_026434339.11.0e-0628.18uncharacterized protein LOC113331914 [Papaver somniferum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX304.9e-1036.03uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6P6SF662.7e-0833.03uncharacterized protein LOC113690648 OS=Coffea arabica OX=13443 GN=LOC113690648 ... [more]
A0A2P6R2K81.1e-0637.27Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464... [more]
A0A6P6SJS01.5e-0633.03uncharacterized protein LOC113692152 OS=Coffea arabica OX=13443 GN=LOC113692152 ... [more]
J7G0Q74.3e-0633.64Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G13980.12.9e-0733.64Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 40..121
e-value: 1.4E-15
score: 57.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 38..122
e-value: 8.7E-10
score: 40.7
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 39..144
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 39..144
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 42..119
e-value: 1.94046E-17
score: 71.5764
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 41..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011660.1Spg011660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity