Spg011454 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011454
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold8: 12891411 .. 12892577 (-)
RNA-Seq ExpressionSpg011454
SyntenySpg011454
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTCTCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCGTCTTCTCTCTTGCCGTTTGTTCTTCCCATGACTCGTCTTCTCTCTTGCCGTTTGTTATTCCCATGTCTCGTCTTCTCTCTTGTCGTTTGTTCTTCTCAGCATCTCTTCTCTCTTGGTTTCCAGATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAGATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCGTCTCTTCGATTTTGCATGCGCGATTTCATGGGGAGACGACTTCGGATTTGCGTGGTAGGGGGTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTTGGCGGTTGGAGGTTCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTCTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTAAGAACGTTTGACCATGTTAACTACTCAAAATTTATTGCTTCCTAGCATAAACTTTCGGGTGAATGCAGACTCATCCAATCCCCAAGGGCATGCTTAACAAGCCTTTCCCCCATTTTGAGGACCTGGCATATGTATTTGGGAAGGATAGAGTCACCGGGGGGGGGGGGGGGTGTCAGAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACAACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA

mRNA sequence

ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTCTCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAGATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTCTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACAACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA

Coding sequence (CDS)

ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTCTCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAGATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTCTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACAACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA

Protein sequence

MLLISLFNAPDFDIQLSLSHHSPFSPFGCRVSALSSSRASSFRFFFQSLVFSLAGCSSHASSAISTRSETLLLDPLAALNRVPLLARFPSSGYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVREGMTSFT
Homology
BLAST of Spg011454 vs. NCBI nr
Match: KAA0043337.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02667.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 6.5e-19
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M EKLP   V A + I+ R++TLK+ +QAIAE+ G  CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAEKLPRCQVRATTVIDCRIKTLKRTFQAIAELRGPACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVKVMAEMR-------SNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSED 211
           AEKE FD WV+    +R       SN P    DR ++ G  N D P        +++S+D
Sbjct: 103 AEKELFDNWVRGDRSVRGDICGRGSNEPGGGYDRFDM-GDGNEDFP--PVYSQGIDLSQD 162

Query: 212 EPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV 237
           + R +  S+T   R  S GSKRKR        EA+
Sbjct: 163 DVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAI 194

BLAST of Spg011454 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-18
Identity = 66/183 (36.07%), Postives = 91/183 (49.73%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M  KLPG +V A + I+ R++TLK+ YQAIAEM G  CSG GWN++ KCI 
Sbjct: 43  GYLAQLLRMMVVKLPGCNVHATTVIDYRIKTLKRSYQAIAEMRGPSCSGFGWNDDAKCII 102

Query: 152 AEKETFDLWVK----------------------------------VMAEMRSNVPDDRVN 211
           AEKE FD WV+                                    A++ SNVP     
Sbjct: 103 AEKEFFDNWVRSHPAAKGLLNKPFPYYDKFAYVFGKDRAMGAHVETFADVGSNVPPGFEE 162

Query: 212 LSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVR 241
                 ND+ I S +    NMS+D+  +T  S+   +R +S GSK +R G     A+ ++
Sbjct: 163 FPPVDQNDMEIPSMSSHRFNMSQDD--ITRPSRGIDSRTTSSGSKCRRGGQTSKTADVIK 222

BLAST of Spg011454 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-18
Identity = 67/181 (37.02%), Postives = 89/181 (49.17%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M +KLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVK----------------------------------VMAEMRSNVPDDRVN 211
           AEKE FD WV+                                    A++ SN P D  +
Sbjct: 103 AEKELFDNWVRSHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGDGYD 162

Query: 212 L--SGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEA 237
               G  N D P++      V++S+D+ R +  S+    R  S GSKRKR        EA
Sbjct: 163 RFDMGDGNEDFPLV--YSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEA 221

BLAST of Spg011454 vs. NCBI nr
Match: KAA0060663.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-18
Identity = 59/146 (40.41%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY  QL  +M  K+PG ++ A S I+SR++ +K+ + A+AEM G  CSG GWN+E KCI 
Sbjct: 39  GYLNQLARMMAFKIPGCNIHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIV 98

Query: 152 AEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQT 211
           AEKE FD W +  A++ SN P         +  D        P +NMS D+   T  ++ 
Sbjct: 99  AEKEVFDDWAESFADIGSNHPAGYDAFPADTTPDTDFPPMYSPGLNMSPDDLMETRTARV 158

Query: 212 YATRNSSRGSKRKRSGPNMHIAEAVR 238
              RN S GSKRKR G      + VR
Sbjct: 159 SERRNVSNGSKRKRPGHATDSGDIVR 183

BLAST of Spg011454 vs. NCBI nr
Match: KAA0025858.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 9.3e-18
Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M EKLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVK----------------------------------VMAEMRSNVPD---D 211
           AEKE FD WV+                                    A++ SN P    D
Sbjct: 103 AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYD 162

Query: 212 RVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAE 237
           R ++ G  N D P        +++S+D+ R +  S+    R  S GSKRKR        E
Sbjct: 163 RFDM-GDGNEDFP--PVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELE 221

BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5D3BT72 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00140 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M EKLP   V A + I+ R++TLK+ +QAIAE+ G  CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAEKLPRCQVRATTVIDCRIKTLKRTFQAIAELRGPACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVKVMAEMR-------SNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSED 211
           AEKE FD WV+    +R       SN P    DR ++ G  N D P        +++S+D
Sbjct: 103 AEKELFDNWVRGDRSVRGDICGRGSNEPGGGYDRFDM-GDGNEDFP--PVYSQGIDLSQD 162

Query: 212 EPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV 237
           + R +  S+T   R  S GSKRKR        EA+
Sbjct: 163 DVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAI 194

BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7UXH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005580 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 59/146 (40.41%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY  QL  +M  K+PG ++ A S I+SR++ +K+ + A+AEM G  CSG GWN+E KCI 
Sbjct: 39  GYLNQLARMMAFKIPGCNIHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIV 98

Query: 152 AEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQT 211
           AEKE FD W +  A++ SN P         +  D        P +NMS D+   T  ++ 
Sbjct: 99  AEKEVFDDWAESFADIGSNHPAGYDAFPADTTPDTDFPPMYSPGLNMSPDDLMETRTARV 158

Query: 212 YATRNSSRGSKRKRSGPNMHIAEAVR 238
              RN S GSKRKR G      + VR
Sbjct: 159 SERRNVSNGSKRKRPGHATDSGDIVR 183

BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 67/181 (37.02%), Postives = 89/181 (49.17%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M +KLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVK----------------------------------VMAEMRSNVPDDRVN 211
           AEKE FD WV+                                    A++ SN P D  +
Sbjct: 103 AEKELFDNWVRSHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGDGYD 162

Query: 212 L--SGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEA 237
               G  N D P++      V++S+D+ R +  S+    R  S GSKRKR        EA
Sbjct: 163 RFDMGDGNEDFPLV--YSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEA 221

BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7SI64 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001320 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-18
Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M EKLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVK----------------------------------VMAEMRSNVPD---D 211
           AEKE FD WV+                                    A++ SN P    D
Sbjct: 103 AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYD 162

Query: 212 RVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAE 237
           R ++ G  N D P        +++S+D+ R +  S+    R  S GSKRKR        E
Sbjct: 163 RFDM-GDGNEDFP--PVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELE 221

BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7V6W3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00590 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-18
Identity = 69/182 (37.91%), Postives = 89/182 (48.90%), Query Frame = 0

Query: 92  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIE 151
           GY AQL  +M EKLPG  V A + I+ R++TLK+ +QAIAEM G  CSG GWN+E KCI 
Sbjct: 43  GYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIV 102

Query: 152 AEKETFDLWVK----------------------------------VMAEMRSNVPD---D 211
           AEKE FD WV+                                    A++ SN P    D
Sbjct: 103 AEKELFDNWVRSHPAVKGLLNKPFPYYDELTYVFGCDRATGRFAETFADVGSNEPGGGYD 162

Query: 212 RVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAE 237
           R ++ G  N D P  S     V++S+D+ R +  S+    R  S GSKRKR        E
Sbjct: 163 RFDM-GDGNEDFP--SVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELE 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043337.16.5e-1942.58retrotransposon protein [Cucumis melo var. makuwa] >TYK02667.1 retrotransposon p... [more]
XP_031742657.12.5e-1836.07uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact... [more]
KAA0050293.13.2e-1837.02retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060663.13.2e-1840.41retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025858.19.3e-1837.36retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BT723.1e-1942.58Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UXH81.6e-1840.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U3081.6e-1837.02Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SI644.5e-1837.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V6W34.5e-1837.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..217
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 91..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011454.1Spg011454.1mRNA