Spg011454 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTCTCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCGTCTTCTCTCTTGCCGTTTGTTCTTCCCATGACTCGTCTTCTCTCTTGCCGTTTGTTATTCCCATGTCTCGTCTTCTCTCTTGTCGTTTGTTCTTCTCAGCATCTCTTCTCTCTTGGTTTCCAGATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAGATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCGTCTCTTCGATTTTGCATGCGCGATTTCATGGGGAGACGACTTCGGATTTGCGTGGTAGGGGGTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTTGGCGGTTGGAGGTTCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTCTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTAAGAACGTTTGACCATGTTAACTACTCAAAATTTATTGCTTCCTAGCATAAACTTTCGGGTGAATGCAGACTCATCCAATCCCCAAGGGCATGCTTAACAAGCCTTTCCCCCATTTTGAGGACCTGGCATATGTATTTGGGAAGGATAGAGTCACCGGGGGGGGGGGGGGGTGTCAGAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACAACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTCTCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAGATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTCTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACAACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTCTCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAGATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTCTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACAACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA MLLISLFNAPDFDIQLSLSHHSPFSPFGCRVSALSSSRASSFRFFFQSLVFSLAGCSSHASSAISTRSETLLLDPLAALNRVPLLARFPSSGYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVREGMTSFT Homology
BLAST of Spg011454 vs. NCBI nr
Match: KAA0043337.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02667.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 105.5 bits (262), Expect = 6.5e-19 Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0
BLAST of Spg011454 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus]) HSP 1 Score: 103.6 bits (257), Expect = 2.5e-18 Identity = 66/183 (36.07%), Postives = 91/183 (49.73%), Query Frame = 0
BLAST of Spg011454 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 103.2 bits (256), Expect = 3.2e-18 Identity = 67/181 (37.02%), Postives = 89/181 (49.17%), Query Frame = 0
BLAST of Spg011454 vs. NCBI nr
Match: KAA0060663.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 103.2 bits (256), Expect = 3.2e-18 Identity = 59/146 (40.41%), Postives = 80/146 (54.79%), Query Frame = 0
BLAST of Spg011454 vs. NCBI nr
Match: KAA0025858.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 101.7 bits (252), Expect = 9.3e-18 Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 0
BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5D3BT72 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00140 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19 Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0
BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7UXH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005580 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18 Identity = 59/146 (40.41%), Postives = 80/146 (54.79%), Query Frame = 0
BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18 Identity = 67/181 (37.02%), Postives = 89/181 (49.17%), Query Frame = 0
BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7SI64 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001320 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 4.5e-18 Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 0
BLAST of Spg011454 vs. ExPASy TrEMBL
Match: A0A5A7V6W3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00590 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 4.5e-18 Identity = 69/182 (37.91%), Postives = 89/182 (48.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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