Spg011113 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011113
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold4: 25043946 .. 25044876 (+)
RNA-Seq Expression	Spg011113
Synteny	Spg011113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCTGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTGAATTGAGCATATCTGTACTTTTAAAGGTTTATCACGTGTTTTGACTTCCTGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGGAAGTTTTTTTTTAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTGGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTCAAGTCCCCGGCAACAGCGAAAAAACTTGTTGGGCTCCTAGA

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTCAAGTCCCCGGCAACAGCGAAAAAACTTGTTGGGCTCCTAGA

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTCAAGTCCCCGGCAACAGCGAAAAAACTTGTTGGGCTCCTAGA

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIQVPGNSEKTCWAPR

Homology

[Close]

BLAST of Spg011113 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg011113 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg011113 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-21
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT 92
               ++++FNV  G    +  DDV WLHA+FR K A  PG  VT
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT 104

[Close]

BLAST of Spg011113 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 62/118 (52.54%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT 92
            LY+ESVH+  + +             EG    +  DDV WLHA+FRAK AGGP GGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVT 1403

[Close]

BLAST of Spg011113 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQR 76
           VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRAKLAGGPGGGVT 92
             +  DDV WLHA+FRAK  GGPGGGVT
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]

BLAST of Spg011113 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg011113 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg011113 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT 92
               ++++FNV  G    +  DDV WLHA+FR K A  PG  VT
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT 104

[Close]

BLAST of Spg011113 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.1e-20
Identity = 62/118 (52.54%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT 92
            LY+ESVH+  + +             EG    +  DDV WLHA+FRAK AGGP GGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVT 1403

[Close]

BLAST of Spg011113 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.7e-18
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQR 76
           VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRAKLAGGPGGGVT 92
             +  DDV WLHA+FRAK  GGPGGGVT
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

The following BLAST results are available for this feature:

BLAST of Spg011113 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	2.1e-22	59.81	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	2.1e-22	59.81	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062407.1	3.9e-21	56.73	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK08952.1	1.3e-19	52.54	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0062409.1	1.2e-17	57.95	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg011113 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	1.0e-22	59.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	1.0e-22	59.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7V638	1.9e-21	56.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CCC7	6.1e-20	52.54	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V9N3	5.7e-18	57.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Spg011113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011113.1	Spg011113.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity