Spg010602 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010602
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold12: 32034139 .. 32040642 (+)
RNA-Seq Expression	Spg010602
Synteny	Spg010602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCTGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCTAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGATGCATTGGTCGAGTTTGATAGTTCAAACATCCCGACCTCTAAGGCACTCACATGCGCTTCGTGTTGTATGTCTATAGGATTTTCTGATGAAGATTTGTTGTTAGGGTCGAAGCCTCACAATAGACCTTTATTCGTCTCAGGATACATCCGAGAACAGAAGGTTAGTCGGATCCTCATTGATGATGGATCAGCTGTCAACATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTCGATGGAAGAATTATCAAACAGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGTCTCGAGCTCATCATTGGGGATTTGAAGGCCGATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAACTGCTATTAGGTCGTCCTTGGATCCATGGCAATGGAGTGATAACTTCTACATTGCACCAGTGCTTCAAATTCTATCAGGATGGCATTAAGAAAGTTGACGCTGACACTAACCCATTTTCAGAAGCTGAATCTCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACTGGGGAGACTATACCTGCAGAAATCCCCTTGATAAAAAAGAATGAGAAACTCAATTTAGAACCCCAAGCTGATACAAGAAAGGAAGCTGTTGAAGATGTGGAGGCTTCTGATCTGAAAAAGGGTGAAACGTCTACAAATCTTGTGAAACCTAAAGTTGTAAAAGATGAGAAGTGTTCACCTGTCCTACGATACATCCCTTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGGTCGGTGACGTTGAAATACTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAGGATGACCAGATAAAAATGATTCTGCCTGACAAACGAACTAAAGACGGGTTCGACCCCAAGTCATACAAACTTCTAGCGAACGCAGGTTATGACTTCACAACTCACATTGAGTTTAAAAGTCTAAGGGCTTTTGATGGAAGATCTGAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGGCTTGGATATAAGTCGCCAGAACCGGTTCGCATAACAAGAAGAGGGAAGGGGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAGAGCACACAACCTACTAATAGCTCCACTCGAGCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAGGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGATCTTCAACTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGGAACAGTCTGCTTCATCGATATCTCACCGGCTTCAAAATGAAGATGCGATGAAAAATGAAAAGATCACTAAGGCCAATGGAGAAATTCGTAGTGCAGTTACTTCACGAATGAAAGAAAAACCCTTGTTATTGTCGATACGGATGGTTCTTTGAAGATAAAGAGACGTGATGTTGTCATCACCAATCCTTCAGAAGAAGATAGTGACCAGGAAGAAGAACTAACCTCTTGCCTTCATATTACTGTTGAAGAAGAAACAGAGGTCGAAGTGTTTGAAGCAGACGAGGATGAATCACCTTTATCACTTGAAGACGGCATTGAATCTATAGTGGATGAGCTTAAAGAAGTAAACCTGGGTACGCCAGAAGAGCCACGCCCAACTTTTATAAGCATGTCACTTACTCCCGAAGAAGAAGGTGAATATATGAGTTTACTCGCTTCATATAAAGATATCTTCGCCTGGTCATACAAAGAGATGCCTGGACTTGACCCAAAAGTAGCTGTCCATCATCTCGCAATTAAAGAGGGGTATCGGCCGGTCAAACAAGCTCAGCGACGCTTTCGCCCGGAACTTATCCCTCAAATTGAAATAGAGGTCAACAAGTTGATAGAAGCGGGATTCATCCGTGAGGTGAAATACCCTACATGGATAGCCAACATTGTTCCTGTTAGAAAGAAGAATGGACAGCTTCGTGTTTGTGTTGACTTTCGCGATTTGAATAACGCATGTCCGAAAGACGATTTTCCTCTACCAATCACAGAAATCATGGTGGATGCCACCACAGGACATGAAGCTTTGTCTTTTATGGATGGATCATCGGGCTATAACCAGATTCGAATGGCTCTTGCAGATGAAGAAATGACAGCCTTTCGAACTCCAAAAGGGATATACTGTTACAAAGTGATGCCCTTTGGATTAAAGAATGTTGGTGCTACTTATCAACGTGCTATGCAAAAGGTCTTCGACGATATGCTGCATAAACATGTCGAGTGCTATGTCGATGATCTTGTTGTTAAGTCAAAGAGACAACAAGATCACTTGAAGGATCTAAAAGTGGTATTTGATCGTTTGAGAAAGTATCAATTGAGGATGAACCCTCTCAAATGTGCATTCGGTGTTACTTCTGGGAAATTCCTTGGATTTGTTGTTAGACATCGAGGAATCGAAATAGACCAGTCAAAGATTGACGCCATTCAAAAGATGCCAAGGCCTAAAAACTTACATGAGTTGAGAAGCTTGCAGGGTCGTTTGGCCTACATTCGAAGATTCATCTCTAACTTAGCCGGTCGATGCCAACCTTTTCAAAGGCTAATGAGGAAAGGAGAAAAATTCAAGTGGGATGAAGCATGTCAAAACGCTTTCGAAAGCATTAAGAAATATTTGCTTAACTCTCTTGTCTTAGGAGCCCCCATATCTGGAAAGCCATTGATTCTATATATCGCTGCTCAAGAAAGGTCACTGGGAGCGTTATTGGCACAAGAGGGCGAGAAGGGAAAAGAACGAGCCCTTTATTACTTAAGCAGGACTCTGAATGGTGCTGAGATAAATTACTCACCCATTGAGAAAATGTGTCTTGCTCTTTTCTTCGCTATTGACAAGTTAAGGCATTACATGCAAGCTTTCACAGTGCACTTGGTCGCGAAGGCTGATCCTGTTAGATACGTTCTATCGAGAGCGGTTATTTCTGGACGCTTAGCTAAGTGGGCCATCTTACTCCAGCAATATGACATCGTGTACGTACCTAAAAAGGCGGTCAAGGGGCAGACATTAGCCGACTTCTTGGCGAATCATCCAATTCCTTTAGATTGGAAGTTATGTGAGGTACCTGATGAAGAAGTCTTCTATGTTGAAATCACGGAGCCCTGGACTATGTACTTTGATGGTGCAGCACGAAGAAGTGGAGCGGGGGCAGGAATCGTCTTTATTTCGCCTGAGAAACACATGCTCCCCTATAGCTTTGTGCTTGGTGAATTGTGTTCAAACAATGTCGCTGAATATCAAGAACTGATAATTGGCCTCCAAATGGCCTTGGAGATTGGCATAACATATATTGAGGTCTATGGTGATTCAAAGTTGGTCGTTAGCCAACTCTTACTCCAGTATGAAGTGAAGCATAAAGACCTGAAGCCTTATTTCATCTATGCAAAACAACTGCTAGAAAGGTTTGACAGTATAGTACTAGAGCATGTCTCGAGATCAGAAAATAAAAAGGCAGATGCTCTAGCTAATTTGGCGACTGCCCTAACAATCTCAGAGGATATGTCAATGAACATCTCACTTTGTCAGAAGTGGATTGTGCCGCCAATAGAAGATGAAGGTCAAGAGGTGAATATGATCTCTGTTTATGCAATTGACGAAGAGGACTGACGAAAGCCTATTATAGATTATCTTCAACATGGAAGACTTCCCACAAATCCCAGACGTAGGGCTGATATACGGAGAAGAAGAGCTCGATTTATTTACTACAAGGAGACCCTTTATCGTCGTTCTTATGAGGGACTCTTCCTTCTATGCCTTGGAAAGGAAGAAGCAACAAAGGCATTAGATGAGGCACATTCAGGTGTTTGTGGCGCCCACCAGTCGGGTCCAAAGCTCCAGTTTCAATTAAAAAGGATGGGTTATTATTGGCCTACAATGATTCGAGACTCAATTGAATATGCAAAGAAGTGTGAAGCCTGTCAATTCCATGCAAACTTCATACATCAGCCACTGGAGCCTCTTCATCCTACTGTAGCTTTATGGCCTTTTGAAGCTTGGGGACTTGACCTTGTTGGCCCTATAACACCTAAGTCTTCAGCAGGACATTCTTACATTCTTGCAGGGACGGATTACTTCTCAAGATGGGCTGAAGCTGTCGCATTGAAAGAAGCCAAGAAAGAAAATGTTGTGGATTTCATTCGAACTCATATAATCTATCGGTACGGTATCCCTCATCGCATTGTGACAGATAATGGAAGGCAATTCTCCAACGGCCTAATGGACAAGTTGTGTGAGAAGTTTAACTTCAAGCAATACAAGTCCTCTATGTACAATGCCGCGACAAATGGGTTGGCAGAGGCATTCAATAAGACGTTGTGTAACTTATTGAAGAAAGTAGTCTCCAAGACAGAGAGATTGGCAAGAAAAGATCGGTGAAGTGTTGTGGGCTTACCGAACTACTCATCGCACTCCTACAGGGGTCACACCTTATTCCCTCGTCTATGGGGTAGAAGTTGTGCTCCCGTTAGAAAGAGAGATTCCCTCATTAAGGATGGCTGTCCACGAAGGGTTGACAACGGAAGATAATGCTAGGTTGCGCCTTCAAGAGTTAGAAGCACTTGATGAAAGAAGGTTAGAGGCTCAGCAAGCTTTGGAATGCTACCAAGCACGGATGTCTAAAGCCTTTGACAAGAATGTGAAGCTTCGATCATTTCAAGTTGGTGATCTTGTGCTAGCTGTTCGAAGACCCATCATCACGACACGACACACAGGGAACAAGTTCACACCTAAATGGGATGGACCCTACGTCGTCAAAGAAGTCTACACAAATGGAGCGTACAAGATCGTGGATAAAGACGGATTAAGAATAGGCCTGATAAATGGCAAATTTCTTAAAAAGTTTTATGCGTGAAATGTAATGCTCCATATCGCAAGAGCCTAAACTGCATGATACTCTTGGCCCGCATGAGTTAAAAAGGTGAACGGCCAAAAAAAAAAATCAAATTTGTACCTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCCCTGCAAACAAAAAAACAAAGTGCCACAAATATTGGAGCATGATAAAACAAATTGAAGAAGTTCATCCCTACTGGGGGCAACACAACGGGTTGAAGACGTACATTGTTATGAATGAAATGTTATGAATTGAGTGCATAAAAGAGGGCTTCGTTCTTCAAGTTTGGCAACTCACTCACTCCAAGTTTGGCATCTCGTCTCAAGTTTGGTGTTTCGCTTCTTCAAAGTTTGACGTCTCACCCCTTCAAGTATGGTGCCTTGTTTCCTCAAGTTTGCATTCTCCATGGTGGTGAAATCACTGCAAGTGAAGCTGACGATGACCGAGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACACTAGACAGGTGGTGAAATCACTGCAATTGAAGCTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGCGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTAACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGTCGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCATGA

mRNA sequence

ATGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCTGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCTAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGATGCATTGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGGCTTGGATATAAGTCGCCAGAACCGGTTCGCATAACAAGAAGAGGGAAGGGGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAGAGCACACAACCTACTAATAGCTCCACTCGAGCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAGGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGATCTTCAACTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGGAACAGGCTTCGTTCTTCAAGTTTGGCAACTCACTCACTCCAAGTTTGGCATCTCGTCTCAAGTTTGGTGTTTCGCTTCTTCAAAGTTTGACGTCTCACCCCTTCAAGTATGGTGCCTTGTTTCCTCAAGTTTGCATTCTCCATGGTGGTGAAATCACTGCAAGTGAAGCTGACGATGACCGAGGAAACTACAGTCATCAAAGCGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTAACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGTCGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCATGA

Coding sequence (CDS)

ATGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCTGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCTAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGATGCATTGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGGCTTGGATATAAGTCGCCAGAACCGGTTCGCATAACAAGAAGAGGGAAGGGGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAGAGCACACAACCTACTAATAGCTCCACTCGAGCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAGGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGATCTTCAACTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGGAACAGGCTTCGTTCTTCAAGTTTGGCAACTCACTCACTCCAAGTTTGGCATCTCGTCTCAAGTTTGGTGTTTCGCTTCTTCAAAGTTTGACGTCTCACCCCTTCAAGTATGGTGCCTTGTTTCCTCAAGTTTGCATTCTCCATGGTGGTGAAATCACTGCAAGTGAAGCTGACGATGACCGAGGAAACTACAGTCATCAAAGCGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTAACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGTCGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGCATGA

Protein sequence

MVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESCLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASLGDLSSFSIKDLLSLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRASVFRRLSMPIGEEESTFSTPNVTRSSTFQRLNMPIAKEESTFSTPDVTRPSVFQRLSVTTRRDKKEQASFFKFGNSLTPSLASRLKFGVSLLQSLTSHPFKYGALFPQVCILHGGEITASEADDDRGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSNWSRQVVKSLQVKLMSTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPA

Homology

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BLAST of Spg010602 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-29
Identity = 94/249 (37.75%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 61  KGKKKSRRSKPVVEESEDFFCPP----PPITLAEYFPRRFLDDSQGEALEVVTCHIVDVV 120
           K +  +  +K V+   E    PP     P++  +     F++  QG  +++    +    
Sbjct: 167 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRR 226

Query: 121 EDDDVPASSSEMMASLG-DLSSFSIKDLLSLPQEAKSVLIDALKKLLKEGYSLPTTRKGL 180
             D     + ++MA  G D ++ +  D  SL    +  L    KKLL+EG+ +P +RKGL
Sbjct: 227 TKDGFDPKAYKLMAKAGYDFTTHT--DFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGL 286

Query: 181 GYKSPEPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQR 240
           GYKSPEP+RITR+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+R
Sbjct: 287 GYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFER 346

Query: 241 LSVNEMEEESTQPTNSSTRASVFRRLSMPIGEEESTFSTPNVTRSSTFQRLNMPIAKEES 300
           LS+ E E +  Q T++  + S F+RL++   EE+    T   T+ S F+RL++   K   
Sbjct: 347 LSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQ 406

Query: 301 TFSTPDVTR 305
           T   P + R
Sbjct: 407 TPRAPIINR 413

[Close]

BLAST of Spg010602 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-29
Identity = 103/286 (36.01%), Postives = 151/286 (52.80%), Query Frame = 0


Query: 119  DDVPASSSEMMASLG-DLSSFSIKDLLSLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGY 178
            D     + ++MA +G D ++      L + ++ K  L    KKLL+EG+++P +RKGLGY
Sbjct: 808  DGFDPKAYKLMAKVGYDFTTHIEFKSLKIHEQPK--LSSTQKKLLREGHAIPMSRKGLGY 867

Query: 179  KSPEPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLS 238
            KSPEP+RITR+GK KV D NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS
Sbjct: 868  KSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTSAFDRISPHVARTPVFERLS 927

Query: 239  VNEMEEESTQPTNSSTRASVFRRLSMPIGEEESTFSTPNVTRSSTFQRLNMPIAKEESTF 298
            + E+E +  Q T++  R S F+RL+M   +E+        TR S F+RL+M   K   T 
Sbjct: 928  MTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTTRPSAFERLSMAKKKNVQT- 987

Query: 299  STPDVTRPSVFQRLSVTTRRDKKEQASFFKFGNSL-TPSLASRLKFGVSLLQSLTSHPFK 358
                  RP +F RL        +++ S  + G+S+ T    S  +  V      T     
Sbjct: 988  -----PRPPIFNRL--------RDEGSHVQTGSSIDTKKKESTSRASVWCRIKHTDVESC 1047

Query: 359  YGALFPQVCILHGGEITASEADDDRGNYSHQSDWSRQVVKSLQVKL 403
            +G  FP     H   +   E +D +      S     +++ L++++
Sbjct: 1048 HGKEFPWEVKRHDVILINPEKEDSKQREGEISCHHITILEELEIEI 1077

[Close]

BLAST of Spg010602 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-03
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESCLFRDSKRKVKSQRK 60
           +V+F +E   + S+EK  SIE+++EGW +V RRKK++ +  QKES  +R+ +R  K+++ 
Sbjct: 399 VVQFHQEVAPEDSREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRNYRRGNKAEKN 458

Query: 61  KGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQ 102
           K KKK+++ K   E      C     T  E  P R L++ +
Sbjct: 459 KKKKKTQKLK-FDENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 139.0 bits (349), Expect = 1.0e-28
Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 145 SLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKGKVADTNHITVEEV 204
           SL    +  L    KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D NHITV+EV
Sbjct: 280 SLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEV 339

Query: 205 DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRASVFRRLSMP 264
           D  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++  R S F+RL++ 
Sbjct: 340 DSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTIT 399

Query: 265 IGEEESTFSTPNVTRSSTFQRLNMPIAKEESTFSTPDVTR 305
             EE+    T   T+ S F+RL++   K   T   P + R
Sbjct: 400 FKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 439

[Close]

BLAST of Spg010602 vs. NCBI nr
Match: XP_031739261.1 (uncharacterized protein LOC116402916 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-28
Identity = 77/143 (53.85%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 145 SLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKGKVADTNHITVEEV 204
           SL    +  L    KKLL+EG+S+P +RKGLGYKSPEP+RIT++GK KV D NHIT+EE 
Sbjct: 16  SLEIHDRPELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEED 75

Query: 205 DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRASVFRRLSMP 264
           D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFRRL+  
Sbjct: 76  DNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTT 135

Query: 265 IGEEESTFSTPNVTRSSTFQRLN 288
             +EEST      TR S F+RL+
Sbjct: 136 PIKEESTCHALTTTRPSAFERLD 158

[Close]

BLAST of Spg010602 vs. NCBI nr
Match: XP_031737039.1 (uncharacterized protein LOC116402129 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-28
Identity = 77/144 (53.47%), Postives = 97/144 (67.36%), Query Frame = 0


Query: 145 SLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKGKVADTNHITVEEV 204
           SL    +  L    KKLL+EG+S+P +RKGLGYKSPEP+RIT++GK KV D NHIT+EE 
Sbjct: 16  SLEIHDRPELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEED 75

Query: 205 DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRASVFRRLSMP 264
           D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFRRL+  
Sbjct: 76  DNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTT 135

Query: 265 IGEEESTFSTPNVTRSSTFQRLNM 289
             +EEST      TR S F+RL +
Sbjct: 136 PIKEESTCHALTTTRPSAFERLGV 159

[Close]

BLAST of Spg010602 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-30
Identity = 103/286 (36.01%), Postives = 151/286 (52.80%), Query Frame = 0


Query: 119  DDVPASSSEMMASLG-DLSSFSIKDLLSLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGY 178
            D     + ++MA +G D ++      L + ++ K  L    KKLL+EG+++P +RKGLGY
Sbjct: 808  DGFDPKAYKLMAKVGYDFTTHIEFKSLKIHEQPK--LSSTQKKLLREGHAIPMSRKGLGY 867

Query: 179  KSPEPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLS 238
            KSPEP+RITR+GK KV D NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS
Sbjct: 868  KSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTSAFDRISPHVARTPVFERLS 927

Query: 239  VNEMEEESTQPTNSSTRASVFRRLSMPIGEEESTFSTPNVTRSSTFQRLNMPIAKEESTF 298
            + E+E +  Q T++  R S F+RL+M   +E+        TR S F+RL+M   K   T 
Sbjct: 928  MTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTTRPSAFERLSMAKKKNVQT- 987

Query: 299  STPDVTRPSVFQRLSVTTRRDKKEQASFFKFGNSL-TPSLASRLKFGVSLLQSLTSHPFK 358
                  RP +F RL        +++ S  + G+S+ T    S  +  V      T     
Sbjct: 988  -----PRPPIFNRL--------RDEGSHVQTGSSIDTKKKESTSRASVWCRIKHTDVESC 1047

Query: 359  YGALFPQVCILHGGEITASEADDDRGNYSHQSDWSRQVVKSLQVKL 403
            +G  FP     H   +   E +D +      S     +++ L++++
Sbjct: 1048 HGKEFPWEVKRHDVILINPEKEDSKQREGEISCHHITILEELEIEI 1077

[Close]

BLAST of Spg010602 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-03
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESCLFRDSKRKVKSQRK 60
           +V+F +E   + S+EK  SIE+++EGW +V RRKK++ +  QKES  +R+ +R  K+++ 
Sbjct: 399 VVQFHQEVAPEDSREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRNYRRGNKAEKN 458

Query: 61  KGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQ 102
           K KKK+++ K   E      C     T  E  P R L++ +
Sbjct: 459 KKKKKTQKLK-FDENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 142.1 bits (357), Expect = 5.8e-30
Identity = 94/249 (37.75%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 61  KGKKKSRRSKPVVEESEDFFCPP----PPITLAEYFPRRFLDDSQGEALEVVTCHIVDVV 120
           K +  +  +K V+   E    PP     P++  +     F++  QG  +++    +    
Sbjct: 167 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRR 226

Query: 121 EDDDVPASSSEMMASLG-DLSSFSIKDLLSLPQEAKSVLIDALKKLLKEGYSLPTTRKGL 180
             D     + ++MA  G D ++ +  D  SL    +  L    KKLL+EG+ +P +RKGL
Sbjct: 227 TKDGFDPKAYKLMAKAGYDFTTHT--DFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGL 286

Query: 181 GYKSPEPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQR 240
           GYKSPEP+RITR+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+R
Sbjct: 287 GYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFER 346

Query: 241 LSVNEMEEESTQPTNSSTRASVFRRLSMPIGEEESTFSTPNVTRSSTFQRLNMPIAKEES 300
           LS+ E E +  Q T++  + S F+RL++   EE+    T   T+ S F+RL++   K   
Sbjct: 347 LSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQ 406

Query: 301 TFSTPDVTR 305
           T   P + R
Sbjct: 407 TPRAPIINR 413

[Close]

BLAST of Spg010602 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.9e-29
Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 145 SLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKGKVADTNHITVEEV 204
           SL    +  L    KKLL+EG+ +P +RKGLGYKSPEP+RITR+GK KV D NHITV+EV
Sbjct: 280 SLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEV 339

Query: 205 DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRASVFRRLSMP 264
           D  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++  R S F+RL++ 
Sbjct: 340 DSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTIT 399

Query: 265 IGEEESTFSTPNVTRSSTFQRLNMPIAKEESTFSTPDVTR 305
             EE+    T   T+ S F+RL++   K   T   P + R
Sbjct: 400 FKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 439

[Close]

BLAST of Spg010602 vs. ExPASy TrEMBL
Match: A0A5A7T3Z3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001190 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.1e-28
Identity = 118/414 (28.50%), Postives = 161/414 (38.89%), Query Frame = 0


Query: 1   MVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESCLFRDSKRKVKSQRK 60
           MV+F +E   + SQ K  SIE+++E W +V RRKK++ +  QKESC + + +R  K+++ 
Sbjct: 1   MVQFHQEVAPEDSQVKERSIEEDDEWWIVVTRRKKRKSTPTQKESCFYINYRRGNKAKKN 60

Query: 61  KGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDD 120
           K KKK+R+ K V EE +DF  P   +TL ++FP R L D Q E LEVV CH ++ +E++ 
Sbjct: 61  KKKKKTRKPKLVHEEDKDFPRPQCLVTLVDFFPTRLLYDHQNENLEVVECHAINAIEEES 120

Query: 121 VPASSSEMMASLGDLSSFSIKDLLSLPQEAKSVLIDAL---------------------- 180
           + + S E      D S  ++ DLLSLPQE K+ LI+AL                      
Sbjct: 121 ILSRSLEEEGVSKDPSRSNVDDLLSLPQETKTDLINALLNSVASSSSTPIATYESLPYYM 180

Query: 181 ------------------------------------------------------------ 233
                                                                       
Sbjct: 181 SINFSDDDLLLGSKLHNRPLYVSGYFREQRVDRILIDNGSGINVMLKSTMRQLGILMEEF 240

[Close]

BLAST of Spg010602 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-28
Identity = 81/187 (43.32%), Postives = 115/187 (61.50%), Query Frame = 0


Query: 119 DDVPASSSEMMASLG-DLSSFSIKDLLSLPQEAKSVLIDALKKLLKEGYSLPTTRKGLGY 178
           D     + ++MA  G D ++ +    L + ++ K  L    KKLL+EG+ +P +RKGLGY
Sbjct: 397 DGFDPKAYKLMAKAGYDFTTHTEFKSLKIYEQPK--LSSTQKKLLREGHVIPMSRKGLGY 456

Query: 179 KSPEPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLS 238
           KSPEP+RITR+GK KV D+NHIT++E D  +EKE   QRTS F RI P VARA VF++LS
Sbjct: 457 KSPEPIRITRKGKEKVVDSNHITLKEADSMEEKEGDSQRTSAFDRISPHVARAPVFEKLS 516

Query: 239 VNEMEEESTQPTNSSTRASVFRRLSMPIGEEESTFSTPNVTRSSTFQRLNMPIAKEESTF 298
           + E E +  Q T++  R S F+RL++   EE+    T   T+ S F+RL++   K   T 
Sbjct: 517 MTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTP 576

Query: 299 STPDVTR 305
             P + R
Sbjct: 577 LAPIINR 581

The following BLAST results are available for this feature:

BLAST of Spg010602 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28162.1	1.2e-29	37.75	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
KAA0042067.1	1.2e-29	36.01	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
KAA0042067.1	3.3e-03	35.64	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
XP_031739261.1	5.1e-28	53.85	uncharacterized protein LOC116402916 [Cucumis sativus]	[more]
XP_031737039.1	5.1e-28	53.47	uncharacterized protein LOC116402129 [Cucumis sativus]	[more]

BLAST of Spg010602 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJZ7	5.8e-30	36.01	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TJZ7	1.6e-03	35.64	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UMY2	4.9e-29	48.75	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7T3Z3	7.1e-28	28.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UD46	9.3e-28	43.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

Pages

BLAST of Spg010602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010602.1	Spg010602.1	mRNA