Spg010536 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010536
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	regulation of nuclear pre-mRNA domain-containing protein 1B-like
Location	scaffold5: 11042338 .. 11043784 (+)
RNA-Seq Expression	Spg010536
Synteny	Spg010536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGCAGATAGCTCGATCTCAAATTGAGCTAGCAAGTAATGTTAGGAAGAGATGTACGACTCCAGTTCCTGGTCCTCTTGCTACTACCATTGATCTACTGACAGAAATGACCCATGGGACTGATACTAAGTTATCTTCAGTTCAATCAAACACGATCTCTTCTCAGTCCCCTCTTGTCCAGGCTATGGTTTCTTTTTCTGGTCCTAAAACCAGTGAAGAGGAAAACAAGAGAGCTGCTGCTGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCTTCGGCACAGATGCTTACCTCTGTTCTTTCATCCCTTGTTGCAGAAGAAGCTGCTTCCATGAATGGCGGCCTAAAATCATCTGGGTTTGCTTCATTATCTATATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCAATGCCTATTTCTGATGTCAGCAGTTCAGATGGCATTGGCGCATCATTTGTTACACCAATGCAACAACAACAATTGACAAGTGCAAACGTGCAACCTGTATCCCAGGCTAATCCGAGTCAAGCTTCATTTGCTCCACCTCCTCCTCCAGCACCACCATCTCTATCCTCCACAACTCCACCAGTGAATCAATACGCGCAGTCTGGTGGAATGATAGGGGTATTGCCTTATAATTTTGGGGCATATTCTCTACCACCTCCACCTCCTTTGCCTCCACATATTGCAATGGGTTTGAGTAGGCCGACATCTCAGCCACCTCAGCAACAACCGCAGCAGCCTCAGCAGTCACAGCCAACTTCAGTTGGATTTTATCGGCCACCAGGTATAGGTTTTTATGGGCAAGGCCAGCAGTCGACACCGCCACCCGTCCCTAGGCAGTAAGTTCCCAGGTAGAATTTACTTGGGGCAAATGTTCACTTAAAAGGATTAATAGCTTTAAATGGGTTAAATTAGCCATTCACATTTCTACTTGCCAATTGAGAGTTCATTACAGAATTTGTATTATCATGTAAATTAGTAGAATTTTTTGGTTCTGTAGAAGTTTTAGTATATGTCATCTCCTGCGAACAATTTAAAAGAGCATGTTGCAGCTGAGGTTCGTTCATGCTGATGACAAAATTAAGTGGCTACATTTAGGCTTTTCCAGTGTAATGCTATCAAAACTGGAAAGCTCGATGAATTCTCGGCTACCTCGAAATTTTACTGCGGCCAGGTAAGCTTTTCTCCCATTTGTTTGGAAGCTGGCTAGAAAATACTGCCTAGCGGATTTTTAGTTGACATGTTAGATTCAACTTTCAAGACATTGTTGCCTTTAAATCTGCATGGATAGAGTGGCAAGTAGACTTGTTTTGGATAGTAATAACAGGATGATACTGGTCTGTAATATAACTTAGTGAGGCCTTGAAAATTACAAGTAGATACAGCATTGCCATGGTTTTGTAATCTGTTGCTCTGTTTTCTGTTTCAGTAG

mRNA sequence

ATGAATCTGCAGATAGCTCGATCTCAAATTGAGCTAGCAAGTAATGTTAGGAAGAGATGTACGACTCCAGTTCCTGGTCCTCTTGCTACTACCATTGATCTACTGACAGAAATGACCCATGGGACTGATACTAAGTTATCTTCAGTTCAATCAAACACGATCTCTTCTCAGTCCCCTCTTGTCCAGGCTATGGTTTCTTTTTCTGGTCCTAAAACCAGTGAAGAGGAAAACAAGAGAGCTGCTGCTGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCTTCGGCACAGATGCTTACCTCTGTTCTTTCATCCCTTGTTGCAGAAGAAGCTGCTTCCATGAATGGCGGCCTAAAATCATCTGGGTTTGCTTCATTATCTATATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCAATGCCTATTTCTGATGTCAGCAGTTCAGATGGCATTGGCGCATCATTTGTTACACCAATGCAACAACAACAATTGACAAGTGCAAACGTGCAACCTGTATCCCAGGCTAATCCGAGTCAAGCTTCATTTGCTCCACCTCCTCCTCCAGCACCACCATCTCTATCCTCCACAACTCCACCAGTGAATCAATACGCGCAGTCTGGTGGAATGATAGGGGTATTGCCTTATAATTTTGGGGCATATTCTCTACCACCTCCACCTCCTTTGCCTCCACATATTGCAATGGGTTTGAGTAGGCCGACATCTCAGCCACCTCAGCAACAACCGCAGCAGCCTCAGCAGTCACAGCCAACTTCAGTTGGATTTTATCGGCCACCAGGTATAGGTTTTTATGGGCAAGGCCAGCAGTCGACACCGCCACCCGTCCCTAGGCAGCTTTTCCAGTGTAATGCTATCAAAACTGGAAAGCTCGATGAATTCTCGGCTACCTCGAAATTTTACTGCGGCCAGTAG

Coding sequence (CDS)

ATGAATCTGCAGATAGCTCGATCTCAAATTGAGCTAGCAAGTAATGTTAGGAAGAGATGTACGACTCCAGTTCCTGGTCCTCTTGCTACTACCATTGATCTACTGACAGAAATGACCCATGGGACTGATACTAAGTTATCTTCAGTTCAATCAAACACGATCTCTTCTCAGTCCCCTCTTGTCCAGGCTATGGTTTCTTTTTCTGGTCCTAAAACCAGTGAAGAGGAAAACAAGAGAGCTGCTGCTGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCTTCGGCACAGATGCTTACCTCTGTTCTTTCATCCCTTGTTGCAGAAGAAGCTGCTTCCATGAATGGCGGCCTAAAATCATCTGGGTTTGCTTCATTATCTATATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCAATGCCTATTTCTGATGTCAGCAGTTCAGATGGCATTGGCGCATCATTTGTTACACCAATGCAACAACAACAATTGACAAGTGCAAACGTGCAACCTGTATCCCAGGCTAATCCGAGTCAAGCTTCATTTGCTCCACCTCCTCCTCCAGCACCACCATCTCTATCCTCCACAACTCCACCAGTGAATCAATACGCGCAGTCTGGTGGAATGATAGGGGTATTGCCTTATAATTTTGGGGCATATTCTCTACCACCTCCACCTCCTTTGCCTCCACATATTGCAATGGGTTTGAGTAGGCCGACATCTCAGCCACCTCAGCAACAACCGCAGCAGCCTCAGCAGTCACAGCCAACTTCAGTTGGATTTTATCGGCCACCAGGTATAGGTTTTTATGGGCAAGGCCAGCAGTCGACACCGCCACCCGTCCCTAGGCAGCTTTTCCAGTGTAATGCTATCAAAACTGGAAAGCTCGATGAATTCTCGGCTACCTCGAAATTTTACTGCGGCCAGTAG

Protein sequence

MNLQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQAMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSGFASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLTSANVQPVSQANPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQLFQCNAIKTGKLDEFSATSKFYCGQ

Homology

[Close]

BLAST of Spg010536 vs. NCBI nr
Match: XP_022152017.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia] >XP_022152018.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia])

HSP 1 Score: 459.9 bits (1182), Expect = 1.7e-125
Identity = 260/289 (89.97%), Postives = 266/289 (92.04%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQ 62
           LQIARSQIELASNVRKR TTPVPGPLA TIDLLTEMTH  DTKL+SVQSNTISSQSPLVQ
Sbjct: 271 LQIARSQIELASNVRKRLTTPVPGPLAATIDLLTEMTHVADTKLTSVQSNTISSQSPLVQ 330

Query: 63  AMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSG 122
           AMVSF+GPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNG LKSSG
Sbjct: 331 AMVSFAGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGSLKSSG 390

Query: 123 FASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQA 182
           FASL IFSPEKRQKLEKPMPISDV+SSD IG SFVT MQQQQLT      SANVQPVSQA
Sbjct: 391 FASLPIFSPEKRQKLEKPMPISDVNSSDSIG-SFVTSMQQQQLTSVALAQSANVQPVSQA 450

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           NPSQASF PPPPPAPPSLSSTT PVN Y QSG ++GVLPY FGAYSLPPPPPLPPHIAMG
Sbjct: 451 NPSQASFTPPPPPAPPSLSSTT-PVNPYPQSGALMGVLPYGFGAYSLPPPPPLPPHIAMG 510

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           L+RPTSQPPQQQPQQPQQSQPTS GFYRPPGIGFYGQ QQSTPPPVPRQ
Sbjct: 511 LTRPTSQPPQQQPQQPQQSQPTSGGFYRPPGIGFYGQSQQSTPPPVPRQ 557

[Close]

BLAST of Spg010536 vs. NCBI nr
Match: XP_038904543.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida])

HSP 1 Score: 459.1 bits (1180), Expect = 2.9e-125
Identity = 260/290 (89.66%), Postives = 265/290 (91.38%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCT-TPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLV 62
           LQIARSQIELASNVRKR T TPVPG  ATT+DLLTEMTH TDTKLSSVQ N ISSQSPLV
Sbjct: 273 LQIARSQIELASNVRKRFTSTPVPGSSATTMDLLTEMTHVTDTKLSSVQQNIISSQSPLV 332

Query: 63  QAMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 122
           QAM SF GPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNG LKSS
Sbjct: 333 QAMASFPGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGSLKSS 392

Query: 123 GFASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQ 182
           GF+SLSIFSPEKRQKLEKPMPISDVSSSDG+ ASFVTPMQQ QLT      S N QPVSQ
Sbjct: 393 GFSSLSIFSPEKRQKLEKPMPISDVSSSDGVSASFVTPMQQPQLTSLPLAQSVNGQPVSQ 452

Query: 183 ANPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAM 242
           ANPSQASFAPPPPPAPPSLSS TPPVNQY Q GG++GVLPYNFGAYSLPPPPPLPPHIAM
Sbjct: 453 ANPSQASFAPPPPPAPPSLSS-TPPVNQYVQPGGLMGVLPYNFGAYSLPPPPPLPPHIAM 512

Query: 243 GLSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           GLSRPTSQPPQQQ QQPQQSQPTS GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 513 GLSRPTSQPPQQQLQQPQQSQPTSAGFYRPPGIGFYGQGQQSTPPPVPRQ 561

[Close]

BLAST of Spg010536 vs. NCBI nr
Match: XP_004136608.1 (regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >XP_031739391.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >KAE8651160.1 hypothetical protein Csa_001803 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.2e-123
Identity = 255/289 (88.24%), Postives = 264/289 (91.35%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCT-TPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLV 62
           LQ+ARSQIELASNVRKR T T VPGP ATT+DLLTEMTH TD+KLSSVQ N ISSQSPL+
Sbjct: 273 LQVARSQIELASNVRKRFTSTTVPGPSATTVDLLTEMTHATDSKLSSVQQNIISSQSPLI 332

Query: 63  QAMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 122
           QAM SF GPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS
Sbjct: 333 QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 392

Query: 123 GFASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT-----SANVQPVSQA 182
           GF+SLS+FSPEKRQKLEKPMPISDVSSSDG GASFV PMQQQ  +     SAN QPVSQA
Sbjct: 393 GFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFVAPMQQQMTSMPLAQSANGQPVSQA 452

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           NPSQASFAPPPPP PPSLSS TPPVNQYAQSGG++GVLPYNFGAYSLPPPPPLPPHIAMG
Sbjct: 453 NPSQASFAPPPPPVPPSLSS-TPPVNQYAQSGGLMGVLPYNFGAYSLPPPPPLPPHIAMG 512

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPP QQ QQPQQSQP S GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 513 LSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQGQQSTPPPVPRQ 560

[Close]

BLAST of Spg010536 vs. NCBI nr
Match: KAG7027736.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452.6 bits (1163), Expect = 2.7e-123
Identity = 255/289 (88.24%), Postives = 262/289 (90.66%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQ 62
           LQIARSQIELASNVRKR  +PVPGPLAT IDLLTEMTH TD KL S QSNTISSQSPLVQ
Sbjct: 261 LQIARSQIELASNVRKRIASPVPGPLATNIDLLTEMTHVTDAKLPSAQSNTISSQSPLVQ 320

Query: 63  AMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSG 122
           AMVS +GPK+SEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKS+G
Sbjct: 321 AMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSAG 380

Query: 123 FASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQA 182
           FASLSIFSPEKRQKLEKPMPISD  SSDGIGASFVTPMQQQQLT      SAN+QPVSQA
Sbjct: 381 FASLSIFSPEKRQKLEKPMPISD--SSDGIGASFVTPMQQQQLTNVALAQSANIQPVSQA 440

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           N SQASFAPPPPPA        PPVNQYAQSGG++GVLPYNFGAYSLPPPPPLPPHI MG
Sbjct: 441 NQSQASFAPPPPPA--------PPVNQYAQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMG 500

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPPQQQPQQPQQSQPTS GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 501 LSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQSTPPPVPRQ 539

[Close]

BLAST of Spg010536 vs. NCBI nr
Match: XP_023539267.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo] >XP_023539268.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.6 bits (1163), Expect = 2.7e-123
Identity = 255/289 (88.24%), Postives = 262/289 (90.66%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQ 62
           LQIARSQIELASNVRKR  +PVPGPLAT IDLLTEMTH TD KL S QSNTISSQSPLVQ
Sbjct: 271 LQIARSQIELASNVRKRIASPVPGPLATNIDLLTEMTHVTDAKLPSAQSNTISSQSPLVQ 330

Query: 63  AMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSG 122
           AMVS +GPK+SEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKS+G
Sbjct: 331 AMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSAG 390

Query: 123 FASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQA 182
           FASLSIFSPEKRQKLEKPMPISD  SSDGIGASFVTPMQQQQLT      SAN+QPVSQA
Sbjct: 391 FASLSIFSPEKRQKLEKPMPISD--SSDGIGASFVTPMQQQQLTNVALAQSANIQPVSQA 450

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           N SQASFAPPPPPA        PPVNQYAQSGG++GVLPYNFGAYSLPPPPPLPPHI MG
Sbjct: 451 NQSQASFAPPPPPA--------PPVNQYAQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMG 510

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPPQQQPQQPQQSQPTS GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 511 LSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQSTPPPVPRQ 549

[Close]

BLAST of Spg010536 vs. ExPASy TrEMBL
Match: A0A6J1DF20 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111019832 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 8.3e-126
Identity = 260/289 (89.97%), Postives = 266/289 (92.04%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQ 62
           LQIARSQIELASNVRKR TTPVPGPLA TIDLLTEMTH  DTKL+SVQSNTISSQSPLVQ
Sbjct: 271 LQIARSQIELASNVRKRLTTPVPGPLAATIDLLTEMTHVADTKLTSVQSNTISSQSPLVQ 330

Query: 63  AMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSG 122
           AMVSF+GPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNG LKSSG
Sbjct: 331 AMVSFAGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGSLKSSG 390

Query: 123 FASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQA 182
           FASL IFSPEKRQKLEKPMPISDV+SSD IG SFVT MQQQQLT      SANVQPVSQA
Sbjct: 391 FASLPIFSPEKRQKLEKPMPISDVNSSDSIG-SFVTSMQQQQLTSVALAQSANVQPVSQA 450

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           NPSQASF PPPPPAPPSLSSTT PVN Y QSG ++GVLPY FGAYSLPPPPPLPPHIAMG
Sbjct: 451 NPSQASFTPPPPPAPPSLSSTT-PVNPYPQSGALMGVLPYGFGAYSLPPPPPLPPHIAMG 510

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           L+RPTSQPPQQQPQQPQQSQPTS GFYRPPGIGFYGQ QQSTPPPVPRQ
Sbjct: 511 LTRPTSQPPQQQPQQPQQSQPTSGGFYRPPGIGFYGQSQQSTPPPVPRQ 557

[Close]

BLAST of Spg010536 vs. ExPASy TrEMBL
Match: A0A0A0LH72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815990 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 6.0e-124
Identity = 255/289 (88.24%), Postives = 264/289 (91.35%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCT-TPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLV 62
           LQ+ARSQIELASNVRKR T T VPGP ATT+DLLTEMTH TD+KLSSVQ N ISSQSPL+
Sbjct: 144 LQVARSQIELASNVRKRFTSTTVPGPSATTVDLLTEMTHATDSKLSSVQQNIISSQSPLI 203

Query: 63  QAMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 122
           QAM SF GPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS
Sbjct: 204 QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 263

Query: 123 GFASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT-----SANVQPVSQA 182
           GF+SLS+FSPEKRQKLEKPMPISDVSSSDG GASFV PMQQQ  +     SAN QPVSQA
Sbjct: 264 GFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFVAPMQQQMTSMPLAQSANGQPVSQA 323

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           NPSQASFAPPPPP PPSLSS TPPVNQYAQSGG++GVLPYNFGAYSLPPPPPLPPHIAMG
Sbjct: 324 NPSQASFAPPPPPVPPSLSS-TPPVNQYAQSGGLMGVLPYNFGAYSLPPPPPLPPHIAMG 383

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPP QQ QQPQQSQP S GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 384 LSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQGQQSTPPPVPRQ 431

[Close]

BLAST of Spg010536 vs. ExPASy TrEMBL
Match: A0A6J1FGC3 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita moschata OX=3662 GN=LOC111445436 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.3e-123
Identity = 255/289 (88.24%), Postives = 262/289 (90.66%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQ 62
           LQIARSQIELASNVRKR  +PVPGPLAT IDLLTEMTH TD KL S QSNTISSQSPLVQ
Sbjct: 271 LQIARSQIELASNVRKRIVSPVPGPLATNIDLLTEMTHVTDVKLPSAQSNTISSQSPLVQ 330

Query: 63  AMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSG 122
           AMVS +GPK+SEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKS+G
Sbjct: 331 AMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSAG 390

Query: 123 FASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQA 182
           FASLSIFSPEKRQKLEKPMPISD  SSDGIGASFVTPMQQQQLT      SAN+QPVSQA
Sbjct: 391 FASLSIFSPEKRQKLEKPMPISD--SSDGIGASFVTPMQQQQLTNVALAQSANIQPVSQA 450

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           N SQASFAPPPPPA        PPVNQYAQSGG++GVLPYNFGAYSLPPPPPLPPHI MG
Sbjct: 451 NQSQASFAPPPPPA--------PPVNQYAQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMG 510

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPPQQQPQQPQQSQPTS GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 511 LSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQSTPPPVPRQ 549

[Close]

BLAST of Spg010536 vs. ExPASy TrEMBL
Match: A0A6J1I2G4 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111470291 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 8.6e-123
Identity = 256/291 (87.97%), Postives = 264/291 (90.72%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCTTPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLVQ 62
           LQIARSQIELASNVRKR  +PVPGPLAT+IDLLTEMTH TD KLSS QSNTISSQSPLVQ
Sbjct: 271 LQIARSQIELASNVRKRIASPVPGPLATSIDLLTEMTHVTDAKLSSAQSNTISSQSPLVQ 330

Query: 63  AMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSG 122
           AMVS +GPK+SEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKS+G
Sbjct: 331 AMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSAG 390

Query: 123 FASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT------SANVQPVSQA 182
           FASLSIFSPEKRQKLEKPMPISD  SSDGIGASFVTPMQQQQLT      SAN+QPVSQA
Sbjct: 391 FASLSIFSPEKRQKLEKPMPISD--SSDGIGASFVTPMQQQQLTNVALAQSANIQPVSQA 450

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           N SQASFAPPPPPA        PPVNQYAQSGG++GVLPYNFGAYSLPPPPPLPPHI MG
Sbjct: 451 NQSQASFAPPPPPA--------PPVNQYAQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMG 510

Query: 243 LSRPTSQPPQQ--QPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPPQQ  QPQQPQQSQPTS GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 511 LSRPTSQPPQQQPQPQQPQQSQPTSAGFYRPPGIGFYGQGQQSTPPPVPRQ 551

[Close]

BLAST of Spg010536 vs. ExPASy TrEMBL
Match: A0A5D3DPK3 (Regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006180 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 9.5e-122
Identity = 256/289 (88.58%), Postives = 261/289 (90.31%), Query Frame = 0


Query: 3   LQIARSQIELASNVRKRCT-TPVPGPLATTIDLLTEMTHGTDTKLSSVQSNTISSQSPLV 62
           LQ+ARSQIELASNVRKR T T  PGP ATTIDLLTEMTH TDTKLSSVQ N ISSQ PLV
Sbjct: 166 LQVARSQIELASNVRKRFTSTTAPGPSATTIDLLTEMTHVTDTKLSSVQQNIISSQPPLV 225

Query: 63  QAMVSFSGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 122
           QAM SF GPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS
Sbjct: 226 QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSS 285

Query: 123 GFASLSIFSPEKRQKLEKPMPISDVSSSDGIGASFVTPMQQQQLT-----SANVQPVSQA 182
           GF+SL  FSPEKRQKLEKPMPISDVSSSDG+GASFV PMQQQ  +     SAN QPVSQA
Sbjct: 286 GFSSL--FSPEKRQKLEKPMPISDVSSSDGVGASFVAPMQQQMTSMPLAQSANGQPVSQA 345

Query: 183 NPSQASFAPPPPPAPPSLSSTTPPVNQYAQSGGMIGVLPYNFGAYSLPPPPPLPPHIAMG 242
           NPSQASFAPPPPP PPSLSS TPPVNQYAQSGG+IGVLPYNFGAYSLPPPPPLPPHIAMG
Sbjct: 346 NPSQASFAPPPPPVPPSLSS-TPPVNQYAQSGGLIGVLPYNFGAYSLPPPPPLPPHIAMG 405

Query: 243 LSRPTSQPPQQQPQQPQQSQPTSVGFYRPPGIGFYGQGQQSTPPPVPRQ 286
           LSRPTSQPP QQ Q PQQSQPTS GFYRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 406 LSRPTSQPPPQQLQPPQQSQPTSSGFYRPPGIGFYGQGQQSTPPPVPRQ 451

The following BLAST results are available for this feature:

BLAST of Spg010536 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152017.1	1.7e-125	89.97	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica char...	[more]
XP_038904543.1	2.9e-125	89.66	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hisp...	[more]
XP_004136608.1	1.2e-123	88.24	regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >X...	[more]
KAG7027736.1	2.7e-123	88.24	Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ...	[more]
XP_023539267.1	2.7e-123	88.24	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo...	[more]

BLAST of Spg010536 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DF20	8.3e-126	89.97	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica ch...	[more]
A0A0A0LH72	6.0e-124	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815990 PE=4 SV=1	[more]
A0A6J1FGC3	1.3e-123	88.24	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita mo...	[more]
A0A6J1I2G4	8.6e-123	87.97	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita ma...	[more]
A0A5D3DPK3	9.5e-122	88.58	Regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo...	[more]

BLAST of Spg010536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..180
None	No IPR available	PANTHER	PTHR12460:SF21	RNA POLYMERASE II-BINDING DOMAIN PROTEIN	coord: 2..285
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 2..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010536.1	Spg010536.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing