Spg009328 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009328
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cyclin-T1-4
Location	scaffold5: 37204010 .. 37205870 (-)
RNA-Seq Expression	Spg009328
Synteny	Spg009328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCTTCCGTCGAACCCTCTAGGGCACACCACAGAAGAACTCTGCACCATCTCCATCCCCAAATTCATGCTTCTCGCCAATCTTCCTCTGCTCTCGATTCGAGCTCTCCCTTAGCACCTACTCCCTCTCTCGCGGGCTTTCACACTCACGGTTTTGTATGTGTAAGTATTTCCAATCCCTTGGTTGTCTTTGAACTTCTCGTCACCCTCTCATGTCGTTTTTGGGGTTCCAATCTCTTTCCCTCGATCTCGCTCCTCCGTCTCGCTCATGGCATCGTTCTACTATTCGCCAGGGAGGGAAGCTCTTGGATTTCGCGAATTCTGAGAGCTTATTTTGGGATAAGGAAAATCGGGGTGTCATTGAGCTTCGTGGCAAGAGTGGATAATGCAAAGGTAAAGAGCGAAGACTTATACTTTCCTGTTTCTCGCTTTACTTAAGTGATTTTTCCTGTTTCTTGGTACCCGCTTGGAGACAGAGTTGGTTGTTTTGCTTAATTGTTAAGGAATTGTTGGAAGTAGACGAAAAGGGGATTAGAGAGTTGGAAGGGCTTATGACCGGAGAGGGTAGGTAGATGGGTAAGCTTACTGTAGACGAATTTGTGCTTCTAACTCTCCACATCCGTGACCTATAGTTGTGGAGTTCATTGTAGGATAATAACTGATTGCTACGGAATGGAAGAAGCACAAGGAACGTATTCGGTTGCATGAGCATAAGTTCTGAAAGCAAATTTTCCGAAGTGGCTTGAAGTATTTCAATTGAACATGTTCTCTTTGGCATGAAGTTGTATTTAATAAACCTGAGTTACCGGAAACTGGTTAGTATGCTAGCAAGTCGAGTATTTCTAGCAAATGGATTTCTAATCTTTGTTGTGAGATTTTTTTGCTTTTACATTTTCTTAGTAGTAATGAGTTCCAATATTTCTTTAACCGAGTCAAAACAATGTACTAACTAAACAAGTCATTCATTCCAAAATTATGAATTGTGAATAATGATTCCTTTAGAAACAATAACATTAACTTTTCATTAAAATTTTAAAAATGAATTCTTCGAACAGAGTCAAAACTAATTTCAGAACAGCCCAATTTGCATTGGCCTTAAAAATAGTATTTAAAATTCCTAAGAAGGTCAAATTTTTTGCTTGGCAAGTCTTACTTGGTAAGGTTAACACTTTGGATCGTGTTCAAAGGCATTCTTCTCTAGTTTTGTTCCCGCAATGGTGCACTCTTTGCAAAATACATGAGGAGGGTTTGTATCATTTGTTGTGGGAGTGTCAGTTTGCTAACCACCTTTGGGATTGATGGAGGAGCTTCTACCGTGTTAGTGGTGTGCGTAACAGAGATGGGCGAGGGTTGTTGGAGGAGGTGCTCTTGCATCCTCCCTTCAGGGAGAAAGGAAATGTGTTGTGGAAAACTTGTTTTTTTGCTGTTTTGTGGGGTGTTTGGCTGGAGAGAAATGATAGGATTTTTAGGGAGAAGGAGAGATCGGGTGAGGAAGTTTGGGAGGTTGTTAGGTTTAATACTGAATTTTTACTTATCTTGATTTTGTTGGCAGGAAATAGCTGTATTAGTTTAAGGGAGTTATCCAATACAGTAACTTGCCATTGTTCTAGACTATTGCAAGATACACATGTCTGGATTTCTACCATTTGATTCAACACATCATAGAACATCTGATGGTGGGTCCTCAAAGAGTTCTCAAGACAAACAAGATGAAGCAGGTCGTTGGTATATGTCTAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGTACATTTTTGCAAGATCTGGGCATGAGGCTTAAAGTGTAA

mRNA sequence

ATGCCAGCTTCCGTCGAACCCTCTAGGGCACACCACAGAAGAACTCTGCACCATCTCCATCCCCAAATTCATGCTTCTCGCCAATCTTCCTCTGCTCTCGATTCGAGCTCTCCCTTAGCACCTACTCCCTCTCTCGCGGGCTTTCACACTCACGGTTTTGTATGTGTAAGTATTTCCAATCCCTTGGTTGTCTTTGAACTTCTCGTCACCCTCTCATGTCGTTTTTGGGGTTCCAATCTCTTTCCCTCGATCTCGCTCCTCCGTCTCGCTCATGGCATCGTTCTACTATTCGCCAGGGAGGGAAGCTCTTGGATTTCGCGAATTCTGAGAGCTTATTTTGGGATAAGGAAAATCGGGGTGTCATTGAGCTTCGTGGCAAGAGTGGATAATGCAAAGAGTTGGTTGTTTTGCTTAATTGTTAAGGAATTGTTGGAAGTAGACGAAAAGGGGATTAGAGAGTTGGAAGGGCTTATGACCGGAGAGGACTATTGCAAGATACACATGTCTGGATTTCTACCATTTGATTCAACACATCATAGAACATCTGATGGTGGGTCCTCAAAGAGTTCTCAAGACAAACAAGATGAAGCAGGTCGTTGGTATATGTCTAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGTACATTTTTGCAAGATCTGGGCATGAGGCTTAAAGTGTAA

Coding sequence (CDS)

ATGCCAGCTTCCGTCGAACCCTCTAGGGCACACCACAGAAGAACTCTGCACCATCTCCATCCCCAAATTCATGCTTCTCGCCAATCTTCCTCTGCTCTCGATTCGAGCTCTCCCTTAGCACCTACTCCCTCTCTCGCGGGCTTTCACACTCACGGTTTTGTATGTGTAAGTATTTCCAATCCCTTGGTTGTCTTTGAACTTCTCGTCACCCTCTCATGTCGTTTTTGGGGTTCCAATCTCTTTCCCTCGATCTCGCTCCTCCGTCTCGCTCATGGCATCGTTCTACTATTCGCCAGGGAGGGAAGCTCTTGGATTTCGCGAATTCTGAGAGCTTATTTTGGGATAAGGAAAATCGGGGTGTCATTGAGCTTCGTGGCAAGAGTGGATAATGCAAAGAGTTGGTTGTTTTGCTTAATTGTTAAGGAATTGTTGGAAGTAGACGAAAAGGGGATTAGAGAGTTGGAAGGGCTTATGACCGGAGAGGACTATTGCAAGATACACATGTCTGGATTTCTACCATTTGATTCAACACATCATAGAACATCTGATGGTGGGTCCTCAAAGAGTTCTCAAGACAAACAAGATGAAGCAGGTCGTTGGTATATGTCTAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGTACATTTTTGCAAGATCTGGGCATGAGGCTTAAAGTGTAA

Protein sequence

MPASVEPSRAHHRRTLHHLHPQIHASRQSSSALDSSSPLAPTPSLAGFHTHGFVCVSISNPLVVFELLVTLSCRFWGSNLFPSISLLRLAHGIVLLFAREGSSWISRILRAYFGIRKIGVSLSFVARVDNAKSWLFCLIVKELLEVDEKGIRELEGLMTGEDYCKIHMSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKV

Homology

[Close]

BLAST of Spg009328 vs. NCBI nr
Match: XP_022994766.1 (cyclin-T1-3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. NCBI nr
Match: XP_023541055.1 (cyclin-T1-5-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. NCBI nr
Match: XP_022994767.1 (cyclin-T1-5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. NCBI nr
Match: XP_022994768.1 (cyclin-T1-4-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. NCBI nr
Match: XP_023541054.1 (cyclin-T1-3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy Swiss-Prot
Match: Q9FKE6 (Cyclin-T1-5 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-5 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           M+G L  + ++  +     S++S +KQ+E  RWY  RKEIEENSPSR DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy Swiss-Prot
Match: Q8GYM6 (Cyclin-T1-4 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-20
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           M+G L  D +   +     S++S +KQDE  RWY  RKEIEENSPSR D IDLKKETYLR
Sbjct: 1   MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy Swiss-Prot
Match: Q2QQS5 (Cyclin-T1-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-20
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 172 LPFDSTHHRTSDGGSSKSSQDKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKETYLR 231
           +P DS+HH   +    +++Q + +E G     WY SRKEIEENSPSRRDGIDLKKE+YLR
Sbjct: 4   MPSDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESYLR 63

Query: 232 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 64  KSYCTFLQDLGMRLKV 79

[Close]

BLAST of Spg009328 vs. ExPASy Swiss-Prot
Match: Q2RAC5 (Cyclin-T1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKE 227
           M G    DS+HH   +    ++  D+  E G+    WY SRKEIEENS SRRDGIDLKKE
Sbjct: 1   MDGIQTSDSSHHGIVENSPYRTPYDRYAEGGQLGASWYFSRKEIEENSLSRRDGIDLKKE 60

Query: 228 TYLRKSYCTFLQDLGMRLKV 244
           +YLRKSYCTFLQDLGMRLKV
Sbjct: 61  SYLRKSYCTFLQDLGMRLKV 80

[Close]

BLAST of Spg009328 vs. ExPASy Swiss-Prot
Match: Q56YF8 (Cyclin-T1-2 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-2 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 7.9e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 186 SSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKV 244
           SS +S    DE   W+ SR+EIE NSPSRRDGIDLK ET LR SYCTFL+ LG RLKV
Sbjct: 17  SSVASNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKV 74

[Close]

BLAST of Spg009328 vs. ExPASy TrEMBL
Match: A0A6J1K036 (cyclin-T1-3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490396 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy TrEMBL
Match: A0A6J1K620 (cyclin-T1-4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490396 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy TrEMBL
Match: A0A6J1JWT1 (cyclin-T1-5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490396 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy TrEMBL
Match: A0A6J1GS49 (cyclin-T1-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457024 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.5e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQ+KQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQEKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. ExPASy TrEMBL
Match: A0A6J1GSE5 (cyclin-T1-5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457024 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.5e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           MSGFLPFDSTHHRTSDGGSSKSSQ+KQDEAG WY+SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1   MSGFLPFDSTHHRTSDGGSSKSSQEKQDEAGHWYLSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. TAIR 10
Match: AT5G45190.1 (Cyclin family protein )

HSP 1 Score: 101.7 bits (252), Expect = 8.7e-22
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           M+G L  + ++  +     S++S +KQ+E  RWY  RKEIEENSPSR DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. TAIR 10
Match: AT4G19600.1 (Cyclin family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-21
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           M+G L  D +   +     S++S +KQDE  RWY  RKEIEENSPSR D IDLKKETYLR
Sbjct: 1   MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Spg009328 vs. TAIR 10
Match: AT5G45190.2 (Cyclin family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-21
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 168 MSGFLPFDSTHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 227
           M+G L  + ++  +     S++S +KQ+E  RWY  RKEIEENSPSR DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 228 KSYCTFLQDLGMRLKV 244
           KSYCTFLQDLGMRLK+
Sbjct: 61  KSYCTFLQDLGMRLKL 76

[Close]

BLAST of Spg009328 vs. TAIR 10
Match: AT4G19560.1 (Cyclin family protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.6e-13
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 186 SSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKV 244
           SS +S    DE   W+ SR+EIE NSPSRRDGIDLK ET LR SYCTFL+ LG RLKV
Sbjct: 17  SSVASNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKV 74

[Close]

BLAST of Spg009328 vs. TAIR 10
Match: AT1G27630.1 (cyclin T 1;3 )

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-12
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 176 STHHRTSDGGSSKSSQDKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQ 235
           S  H  ++  +    +  Q E  +WY SR+EIE  SPSR+DGIDL KE++LR SYCTFLQ
Sbjct: 10  SRQHFEAEARNVSLFESPQCETSKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQ 69

Query: 236 DLGMRLKV 244
            LGM+L V
Sbjct: 70  RLGMKLHV 77

The following BLAST results are available for this feature:

BLAST of Spg009328 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994766.1	6.0e-33	97.37	cyclin-T1-3-like isoform X1 [Cucurbita maxima]	[more]
XP_023541055.1	6.0e-33	97.37	cyclin-T1-5-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022994767.1	6.0e-33	97.37	cyclin-T1-5-like isoform X2 [Cucurbita maxima]	[more]
XP_022994768.1	6.0e-33	97.37	cyclin-T1-4-like isoform X3 [Cucurbita maxima]	[more]
XP_023541054.1	6.0e-33	97.37	cyclin-T1-3-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg009328 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKE6	1.2e-20	65.79	Cyclin-T1-5 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-5 PE=1 SV=2	[more]
Q8GYM6	2.7e-20	67.11	Cyclin-T1-4 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-4 PE=1 SV=1	[more]
Q2QQS5	2.7e-20	65.79	Cyclin-T1-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-1 PE=2 SV=1	[more]
Q2RAC5	1.9e-18	62.50	Cyclin-T1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-3 PE=3 SV=2	[more]
Q56YF8	7.9e-12	67.24	Cyclin-T1-2 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-2 PE=2 SV=2	[more]

BLAST of Spg009328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K036	2.9e-33	97.37	cyclin-T1-3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490396 PE=3 SV=...	[more]
A0A6J1K620	2.9e-33	97.37	cyclin-T1-4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490396 PE=3 SV=...	[more]
A0A6J1JWT1	2.9e-33	97.37	cyclin-T1-5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490396 PE=3 SV=...	[more]
A0A6J1GS49	8.5e-33	96.05	cyclin-T1-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457024 PE=3 S...	[more]
A0A6J1GSE5	8.5e-33	96.05	cyclin-T1-5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457024 PE=3 S...	[more]

BLAST of Spg009328 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45190.1	8.7e-22	65.79	Cyclin family protein	[more]
AT4G19600.1	1.9e-21	67.11	Cyclin family protein	[more]
AT5G45190.2	1.9e-21	64.47	Cyclin family protein	[more]
AT4G19560.1	5.6e-13	67.24	Cyclin family protein	[more]
AT1G27630.1	1.6e-12	52.94	cyclin T 1;3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 187..243 e-value: 5.3E-12 score: 47.6
None	No IPR available	PANTHER	PTHR10026:SF134	SUBFAMILY NOT NAMED	coord: 168..243
IPR043198	Cyclin/Cyclin-like subunit Ssn8	PANTHER	PTHR10026	CYCLIN	coord: 168..243
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 196..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009328.1	Spg009328.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0032786	positive regulation of DNA-templated transcription, elongation
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0008024	cyclin/CDK positive transcription elongation factor complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity