Spg008196 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008196
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold2: 18775774 .. 18778685 (+)
RNA-Seq Expression	Spg008196
Synteny	Spg008196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTTACAGCCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCTCTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGGTATATATTTAGTGAAGAGCGGGTATCGTTTAGGCCAGGGGCCATCGTTGGCCCAAAGCCCTTCATCCTCGTCTTCTGAGTTAACACATAGATGGTGGACTACCTGTTGGAATATGAAGTTACCTGGCAAGATTAAAATCTTCTTCTGGAGACTGTATTTAGATCGGCTGCTCACGATGGATAACTTGTGTAGGCGGAGAATAGACTCACTGAATATATGTGTGTGCTGCAGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATACGAGGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGGTTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGACTGCGAATATGGCAGATTGAGTTGTTGGGTATCTGAATGCTTTCCGTGACTCAAATAAGAGGGGGATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGCAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGCAGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGACCTTTTGTGCTAGAGACAGATTCTATGCAGGTGTCCAAGCTTTTGCAGCATGATGTGGAGGAGGTGTCGGAGTTGGGGATGCTAGTGGAGGATGCGGTGAGGGGCGTTCCAGCGGGGTGGTTGGTAGGCGGCAGCTTTACGATCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGTAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGGTGATTAGTCTAAGCAGATCCAGCTGCCGCCCCAACCATTATGCCTATCCACAGGGAAGGTTTTCTGTTTCCCTTTCTTTATCCTTATGTTTCGCATGCTTGGTTTACTTTCTTGAGGACTTATATGTTTTAGGTTGGGGATGGGAGATGGTGTAGGCTAGTGGGCTTTGGTTTAAGTCTGGATGCACCTGAGCACCAGGCTGATTTATTAATTGATACATGTTATGTTGCTATTGTTTTGCTCTGCTTGTTTGGGTTGAGATCATGCACCTGAGCATTGGACCTGTTGTATTCCTTTTGATTATTTTTTTGGGTTTTGTCGAGCTTAAGTGGTGAAGGGCAGTTGCTGAAGTTAATCATGTTGATGTCCTCGTGTGCACTTGGCTCTCTCTTATGACTTTGTTGATAGTGATGCATGATAACTTATTGAGTGAGCCTCTTGAGTTTCTCTTGAGATCTCCGGCTTGTTTGAGTGTTTAGGCCTCTTCCTTAGGTAGTCTTGAAGGCTCTGGTCTATTTTATGAGTTCTATAGACCTATTGTCACTCCCATAGGTGTAAGATTTAGCTAGGTTGTCTAAATGTTGCATTCTAGCGTGTGTGCTTTACCTAGGTCAGGAGGGAAAAGAAAAGAAATCAAAAGAAAAGAATGGATCTGAAAAGAAAAGATTGGAAAGAAAAGATAAAGAAAAGAAAAGAAAAGAAAAGAGAATGAGTAGTAAGACCTGCTAAAATATGAGTGGTAAAACGAGGCGTGGGCATGCATGTAGTTACTTAAACATGCTCCTTGTTTCCTCAATAAAAGCATGCTTGTAAGAGCCAGGGCTAATAAGGGGTAAAAAGAGCTGCCTGCAGTGTGTTCAGTTAGGCCAACCAAAGGGTAAAACTCGGGATAGGGTCCCTACATTGTAGTGTGAAAGCTAGTACCCCGCGTTTAGAGTGTGGTAAAATTAGTAACTGAGTTTATCTCTTGCAGGTCCTAGGTTTGAGAATGCACCCTCTTTTGTGCCATTTAGCTTCCAGGCGGGACCTTAGTGCCAGTGTAGGGGGAAGATGGGTGGAGGAGTTTATAAGCCTTTCTTGGGCTAGTAGGGGCTGCTTTAGGTGAGGCTTCGCACTTGCTCGCACGAGAGGTTTCGTGGAGTTAACTTTGATCTGCTCCTGAATTTGTTAGCATGCTTTAGCTCTTCTCGCAGGCATAAGTCTTAGCATTTGGAGCGCACGGACTTGATTGTGATAAATTTCAGCTACTGAGTTCCTGCCATCTATATTAAGTATATAACTCTAGGCTTGATTGAGATTTATCAGGTTGTAGGGTGGGGTGTTTGGCAGGGTATTCTGGTGTGTGGAGTGAGTTAATGTGTGTTTATTTTCCTGTGCTAATTGCTGTAATTGGTTTTGTGAACTTTCAGGCCTAGAGTGCGAGGATGGGGGTTGGCTTGAGGCGGGAGTTAAGGCAGGCGGGAGCAAAACTAGTTGCTAGTCTGGGTTTACGATGGTTATTGTGTAATGGGTTTGCTAGTGGTGTAACAGTTTAGCCTATCTGGCTGTCTGCTTAGTGTGTGCGATCCTTCTTTTATTGATTGGAATGTATCAAAAAAAAAACTTCTTGATTTTTGAAAATATGGGAAGAAGGTATACAACAAAACAAAGGAACTTAC

mRNA sequence

ATGACGTTACAGCCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCTCTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATACGAGGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGGTTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGGGGATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGCAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGCAGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGACCTTTTGTGCTAGAGACAGATTCTATGCAGGTGTCCAAGCTTTTGCAGCATGATGTGGAGGAGGTGTCGGAGTTGGGGATGCTAGTGGAGGATGCGGTGAGGGGCGTTCCAGCGGGGTGGTTGGTAGGCGGCAGCTTTACGATCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGTAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGTCTTGAAGGCTCTGGTCTATTTTATGAGTTCTATAGACCTATTGTCACTCCCATAGGTGTCCTAGGTTTGAGAATGCACCCTCTTTTGTGCCATTTAGCTTCCAGGCGGGACCTTAGTGCCAGCCTAGAGTGCGAGGATGGGGGTTGGCTTGAGGCGGGAGTTAAGGCAGGCGGGAGCAAAACTAGTTGCTAG

Coding sequence (CDS)

ATGACGTTACAGCCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCTCTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATACGAGGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGGTTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGGGGATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGCAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGCAGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGACCTTTTGTGCTAGAGACAGATTCTATGCAGGTGTCCAAGCTTTTGCAGCATGATGTGGAGGAGGTGTCGGAGTTGGGGATGCTAGTGGAGGATGCGGTGAGGGGCGTTCCAGCGGGGTGGTTGGTAGGCGGCAGCTTTACGATCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGTAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGTCTTGAAGGCTCTGGTCTATTTTATGAGTTCTATAGACCTATTGTCACTCCCATAGGTGTCCTAGGTTTGAGAATGCACCCTCTTTTGTGCCATTTAGCTTCCAGGCGGGACCTTAGTGCCAGCCTAGAGTGCGAGGATGGGGGTTGGCTTGAGGCGGGAGTTAAGGCAGGCGGGAGCAAAACTAGTTGCTAG

Protein sequence

MTLQPDARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSRASTCFGIVNIRGEIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAEDGVHEFPQARQESLEGSGLFYEFYRPIVTPIGVLGLRMHPLLCHLASRRDLSASLECEDGGWLEAGVKAGGSKTSC

Homology

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BLAST of Spg008196 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 3.7e-21
Identity = 81/235 (34.47%), Postives = 113/235 (48.09%), Query Frame = 0


Query: 104 NELEWDWFEEWVVLLWAIWFRRNEMR----------------------QKKKGDGPV--- 163
           + ++W   EE  V LWAIW  RN+                         +   +GP    
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 164 -----GGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFH 223
                GG+  + C     P    FKVNVDAAF   +  AG+ ++ RDS   V  +A  F 
Sbjct: 62  LLDGRGGRVSAWC----PPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFI 121

Query: 224 ENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAV 283
            ++ D   AE LAA  G+ LA+E    PF +ETDS QV  LL+ D E+ SE+G+L   ++
Sbjct: 122 THVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLA-SSI 181

Query: 284 RGVPAGWLVGG--SFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED 307
           R + +   +GG  SF  REGN  AH L R+ M      VW+EE  S +  ++A D
Sbjct: 182 RHIVSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

[Close]

BLAST of Spg008196 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-18
Identity = 83/239 (34.73%), Postives = 108/239 (45.19%), Query Frame = 0


Query: 94  DIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGG--KTKSGCLQV-- 153
           D+   +R   + + W      VVLLWAIW  RN+  Q     G +          LQV  
Sbjct: 24  DMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLSDLVSWSENYLQVYQ 83

Query: 154 ---------------------GAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFT 213
                                  P     KVNVDAAF  ES  AGVGV+ RDS G V  T
Sbjct: 84  AAQRSSXSALVVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLT 143

Query: 214 ASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGML 273
           A        D D+ EG A   G+ LAVE     F +ETDS+++  LL  D  + SE+G+L
Sbjct: 144 AIRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVL 203

Query: 274 VEDAVRGVPA-GWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED 307
                  + +    V  SFT R GN  AH L +LA+     ++W+EE P  + S+LA D
Sbjct: 204 CSVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

[Close]

BLAST of Spg008196 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-18
Identity = 74/225 (32.89%), Postives = 110/225 (48.89%), Query Frame = 0


Query: 98  LLRDVKNELEWDWFEEWVVLLWAIWFRRNE--MRQKKKGDGPVGG--------------- 157
           +LRD ++ L W  FEE VV LW++W RRN     +++  D  + G               
Sbjct: 4   ILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTN 63

Query: 158 -----KTKSGCLQ------------VGAPEFDG-FKVNVDAAFCLESGEAGVGV-VCRDS 217
                +  S   Q            +  P  +G FK+  DA+F      AG+GV + RD 
Sbjct: 64  HATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDH 123

Query: 218 WGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEE 277
            GQV  +A+ + E++   D AE LAA  GLR+A+ET   P +LETDS+++  L   D E 
Sbjct: 124 RGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEG 183

Query: 278 VSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDR 287
           +S+ G ++E     +     V  SFT R GN +AH L R A++ +
Sbjct: 184 LSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQ 228

[Close]

BLAST of Spg008196 vs. NCBI nr
Match: XP_030936170.1 (uncharacterized protein LOC115961312 [Quercus lobata])

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-17
Identity = 88/333 (26.43%), Postives = 143/333 (42.94%), Query Frame = 0


Query: 6   DARVRDLF-TASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSRA 65
           D +V DL    S QW+  L++  F+ QEV  I+SIPL     ++ +IW +  S  +  ++
Sbjct: 30  DMKVNDLIDPVSKQWDAGLLQGLFNSQEVELIMSIPLCHTYIEDKLIWPYTYSGNYTVKS 89

Query: 66  ST-------CFGIVNIRGEIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVL 125
            +       C  + ++   ++             ++ IK +  + K+           ++
Sbjct: 90  ESEFHALWECSALTSVWNSVLELRLHHDQNVHTVSELIKLIHDEGKD------INLLAMI 149

Query: 126 LWAIWFRRNEMRQKKKGDGPVGGKTKSG----------------------CLQV--GAPE 185
           LW +W+RRN+++   + D PV   + +                       C +V    P 
Sbjct: 150 LWTMWYRRNKLKTTNE-DYPVSQVSTNAKQALTEYHHANQVITLQSPICTCPRVKWSPPP 209

Query: 186 FDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRL 245
              FKVN D A   E  +AG+GVV R+S GQ   + S        +D  E +AA+  +  
Sbjct: 210 AKNFKVNFDGATFKEIRKAGLGVVIRNSLGQPIASLSKLVNLPYSSDIVEVMAAARAIYF 269

Query: 246 AVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNR 305
           A E     F+LE DS  V K L+ D +  S  G ++  A         +  S   R GN 
Sbjct: 270 AQEIGLNSFILEGDSEAVIKCLRSDDDSFSPFGHILAAAKATTETSCCILFSHIRRLGNS 329

Query: 306 VAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED 307
           VAH L + A   R   VWME+ P  + ++L+ D
Sbjct: 330 VAHNLTKHARHVRGFLVWMEDVPPHLQAILSAD 355

[Close]

BLAST of Spg008196 vs. NCBI nr
Match: XP_021738354.1 (uncharacterized protein LOC110704848 [Chenopodium quinoa])

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-17
Identity = 73/226 (32.30%), Postives = 100/226 (44.25%), Query Frame = 0


Query: 106 LEWDWFEEWVVLLWAIWFRRNEMRQKK----------KGDGPVGGKTKSGCLQVGAPEFD 165
           +E DW++ +  +LW IW +RN    +K          K  G VG   K+  L+V AP  D
Sbjct: 5   IEKDWWDLFWCILWGIWLKRNAFLFEKRCVAVQDVFAKASGLVGDYAKA--LEVAAPRVD 64

Query: 166 ---------------GFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDAD 225
                           +K+N DAA C      G+G V RD  G V            D  
Sbjct: 65  KVVPLNQVWTPPMLGAYKINTDAA-CFSDNSVGLGAVMRDWNGDVVVATCSVKMGSFDIV 124

Query: 226 FAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGW 285
            AE LAA  GL +++E    P +LE D +Q+ + L+    E S LG +V D +       
Sbjct: 125 VAEALAARLGLSISLEAGLMPLILEVDFLQLFQKLKKGNSEKSLLGSIVGDILHMASLCS 184

Query: 286 LVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED 307
            +  S T R GN VAH+L  L+ E    RVW E  P C+   +A D
Sbjct: 185 SLSFSHTGRNGNTVAHKLANLSREFNDVRVWYEVVPPCIALDVARD 227

[Close]

BLAST of Spg008196 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 81/235 (34.47%), Postives = 113/235 (48.09%), Query Frame = 0


Query: 104 NELEWDWFEEWVVLLWAIWFRRNEMR----------------------QKKKGDGPV--- 163
           + ++W   EE  V LWAIW  RN+                         +   +GP    
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 164 -----GGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFH 223
                GG+  + C     P    FKVNVDAAF   +  AG+ ++ RDS   V  +A  F 
Sbjct: 62  LLDGRGGRVSAWC----PPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFI 121

Query: 224 ENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAV 283
            ++ D   AE LAA  G+ LA+E    PF +ETDS QV  LL+ D E+ SE+G+L   ++
Sbjct: 122 THVSDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLA-SSI 181

Query: 284 RGVPAGWLVGG--SFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED 307
           R + +   +GG  SF  REGN  AH L R+ M      VW+EE  S +  ++A D
Sbjct: 182 RHIVSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

[Close]

BLAST of Spg008196 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 83/239 (34.73%), Postives = 108/239 (45.19%), Query Frame = 0


Query: 94  DIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGG--KTKSGCLQV-- 153
           D+   +R   + + W      VVLLWAIW  RN+  Q     G +          LQV  
Sbjct: 24  DMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLSDLVSWSENYLQVYQ 83

Query: 154 ---------------------GAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFT 213
                                  P     KVNVDAAF  ES  AGVGV+ RDS G V  T
Sbjct: 84  AAQRSSXSALVVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLT 143

Query: 214 ASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGML 273
           A        D D+ EG A   G+ LAVE     F +ETDS+++  LL  D  + SE+G+L
Sbjct: 144 AIRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVL 203

Query: 274 VEDAVRGVPA-GWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED 307
                  + +    V  SFT R GN  AH L +LA+     ++W+EE P  + S+LA D
Sbjct: 204 CSVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

[Close]

BLAST of Spg008196 vs. ExPASy TrEMBL
Match: A0A803LNT0 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-18
Identity = 93/341 (27.27%), Postives = 139/341 (40.76%), Query Frame = 0


Query: 7   ARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSR--- 66
           A V+DLF   G+W+  ++  +F + EV  I  IPL RF  ++V  W F K+  +  R   
Sbjct: 67  ALVKDLF-CDGEWSLDILNTYFVEWEVMEITKIPLARFGGEDVWAWQFTKNGEFSVRSAY 126

Query: 67  -----------ASTCFGIVNIRGEIMWSAGFGAILS----RCKADDIKFLLRDVKNELEW 126
                      AS       +   ++W+A     +     +   D I      +K  +  
Sbjct: 127 HAEMKDKSCEKASASITSEPVLWNVLWNAKIPPKIKLFGWKVLHDSIAVRASLLKRGMGM 186

Query: 127 DWF--------EEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSGCLQVGAPEFD----- 186
           D             + L +++    +++    K  G VG   K+  L+V AP  D     
Sbjct: 187 DVMCPCCGEAPRNSLTLPFSMPGGPSDLDVFAKASGLVGDYAKA--LEVAAPRVDKVVPL 246

Query: 187 ----------GFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGL 246
                      +K+N DAA C      G+G V RD  G V            D   AE L
Sbjct: 247 NQVWTPPMLGAYKINTDAA-CFSDNSVGLGAVMRDWNGDVVVATCSVKMGSFDIVVAEAL 306

Query: 247 AASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGS 306
           AA  GL +++E    P +LE D +Q+ + L+    E S LG +V D +        +  S
Sbjct: 307 AARLGLSISLEAGLMPLILEVDFLQLFQKLKKGNSEKSLLGSIVGDILHMASLCSSLSFS 366

[Close]

BLAST of Spg008196 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-18
Identity = 74/225 (32.89%), Postives = 110/225 (48.89%), Query Frame = 0


Query: 98  LLRDVKNELEWDWFEEWVVLLWAIWFRRNE--MRQKKKGDGPVGG--------------- 157
           +LRD ++ L W  FEE VV LW++W RRN     +++  D  + G               
Sbjct: 4   ILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTN 63

Query: 158 -----KTKSGCLQ------------VGAPEFDG-FKVNVDAAFCLESGEAGVGV-VCRDS 217
                +  S   Q            +  P  +G FK+  DA+F      AG+GV + RD 
Sbjct: 64  HATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDH 123

Query: 218 WGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEE 277
            GQV  +A+ + E++   D AE LAA  GLR+A+ET   P +LETDS+++  L   D E 
Sbjct: 124 RGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEG 183

Query: 278 VSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDR 287
           +S+ G ++E     +     V  SFT R GN +AH L R A++ +
Sbjct: 184 LSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQ 228

[Close]

BLAST of Spg008196 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-17
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 122 WFRRNEMRQKKKGDGPVGGK-TKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRD 181
           W  +  M  ++    P  G+ T +  +    P+   +K+N DA+F      AG+G++ R+
Sbjct: 6   WANKYVMEFREANSNPFPGRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRN 65

Query: 182 SWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVE 241
             GQV  +A+ + ENI+  D AE + A  GL+LA +    P +LETDS ++  L     E
Sbjct: 66  DRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSE 125

Query: 242 EVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVL 301
           ++SE G +V  A            +F  REGN+ AH L R A+  R   +WME+ P  + 
Sbjct: 126 DLSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWPLELK 185

Query: 302 SLLAEDGVHE 311
           S L  + + E
Sbjct: 186 SCLEMECLEE 195

The following BLAST results are available for this feature:

BLAST of Spg008196 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135942.1	3.7e-21	34.47	uncharacterized protein LOC111007775 [Momordica charantia]	[more]
XP_022150944.1	2.3e-18	34.73	uncharacterized protein LOC111018973 [Momordica charantia]	[more]
XP_022139684.1	5.0e-18	32.89	uncharacterized protein LOC111010533 [Momordica charantia]	[more]
XP_030936170.1	1.5e-17	26.43	uncharacterized protein LOC115961312 [Quercus lobata]	[more]
XP_021738354.1	1.9e-17	32.30	uncharacterized protein LOC110704848 [Chenopodium quinoa]	[more]

BLAST of Spg008196 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C467	1.8e-21	34.47	uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1DBJ7	1.1e-18	34.73	uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A803LNT0	1.9e-18	27.27	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A6J1CDQ4	2.4e-18	32.89	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1CIF1	3.5e-17	32.11	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Spg008196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 156..286 e-value: 9.6E-9 score: 37.4
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 160..281 e-value: 1.1E-16 score: 60.8
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 185..284 score: 9.190479
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 123..306
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 123..306
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 159..280 e-value: 1.4554E-12 score: 61.9464
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 157..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008196.1	Spg008196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity