Spg008130 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008130
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold1: 53423787 .. 53424961 (+)
RNA-Seq ExpressionSpg008130
SyntenySpg008130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACCTCTCCTGTACCTCCTGCCACCACACCAACCAAGCCAAAGGTTAAAACGCCTAAGGTTGCATCGCCAAAGAATCCATTCCCTGAGGTCTTTAGAGATGTTAATTTTCAAGAGAAGATGGAGATTATGAGGAAGAGGGACTTCTTGAACGAGAAGGGATTTTCAAGCCGAGCACGAACCTTGCCTGATTTTGTAACAAAGGTCATCACCCAATATAAATGGCAAGAGTTCTGTGCTCACCGTCAAGAGGTCGTGGTGCCTCTAGTCCGAGAGTTTTATGCAGGGTTGAGGTAAGAAAGCTTGAGCTTGGCGATTGTGAGAGGGAAGATGGTGAGTTTCCCTTCAGTCGACATTAACAAGGTATATCAGATCAAAGCTCCTTTGCATCCGAGAGGGAACAATGCAATTAAGAACCCTTCGGCCAAGCAGTTAAAATAAGCTTTGAAGATAGTGGTCAGGAAGGGAGTCCAATGGAAGGAGTCTCAAAACAAAGTGAAGACACTAGGGCCAAGTGACTTAAAGCCAGAACTGGCAGTGTGGTTTCACTTTATCAAAAACAGGTTGATGCCCACAACCCACGATAGTACCATTTCAGTAGAGAGGGTTATGCTTCTCTACAGCATCATGAAGGTGTGGGATATCAATATAGGGAGTATCATCAGAGAAGATATCCTGTCCTGTTGGAGAAAGAGAGTGGGGAAGTATTTTTTGGGTCTCTCATAACCCAATTATGTCAGAGAGTCAAGATCGTTCCTGGTAAAGATGAGAAACAACACTTTTTCAGGCCCACTATTGACTTGCCTCTGATCGGGAAGCTTCAACAAAACAATGCTCAAAGTAAAGATAAGGCTTCCACATCCCATGCTACTCCATCTCTGGGGCTGACACCTGCTTCACCTCCATAGCACACTCCTATTTTAGGGCCTACACCATCATCAGAGGTCCTTGCATTTGCCTTCCGTCAGCTAGACCGCATTGAGGATAAGTTGAAAACCTATTGGGTCTATGCGAAGGAAAGAGATGAAGCAATTAGAGAGTTTTATCTCTCTATCACCCTAAGCATTTCCCCTGTTTTCCCTAAATTCCCTCAAGTCTTGCTGCCTCAAGAAGAAAAAGAACCTGAAGATGAAGATGAAGAAGATGAAGAGAGTTCCTCAGAGGAGGAATAG

mRNA sequence

ATGGACACCTCTCCTGTACCTCCTGCCACCACACCAACCAAGCCAAAGGTTAAAACGCCTAAGGTTGCATCGCCAAAGAATCCATTCCCTGAGGTCTTTAGAGATGTTAATTTTCAAGAGAAGATGGAGATTATGAGGAAGAGGGACTTCTTGAACGAGAAGGGATTTTCAAGCCGAGCACGAACCTTGCCTGATTTTGTAACAAAGGTCATCACCCAATATAAATGGCAAGAGTTCTGTGCTCACCGTCAAGAGGTCGTGGTGCCTCTAGTCCGAGAGTTTTATGCAGGGTTGAGGGAGTATCATCAGAGAAGATATCCTGTCCTGTTGGAGAAAGAGAGTGGGGAAGTATTTTTTGGGTCTCTCATAACCCAATTATGTCAGAGAGTCAAGATCGTTCCTGGTAAAGATGAGAAACAACACTTTTTCAGGCCCACTATTGACTTGCCTCTGATCGGGAAGCTTCAACAAAACAATGCTCAAAGGCCTACACCATCATCAGAGGTCCTTGCATTTGCCTTCCGTCAGCTAGACCGCATTGAGGATAAGTTGAAAACCTATTGGGTCTATGCGAAGGAAAGAGATGAAGCAATTAGAGAGTTTTATCTCTCTATCACCCTAAGCATTTCCCCTGTTTTCCCTAAATTCCCTCAAGTCTTGCTGCCTCAAGAAGAAAAAGAACCTGAAGATGAAGATGAAGAAGATGAAGAGAGTTCCTCAGAGGAGGAATAG

Coding sequence (CDS)

ATGGACACCTCTCCTGTACCTCCTGCCACCACACCAACCAAGCCAAAGGTTAAAACGCCTAAGGTTGCATCGCCAAAGAATCCATTCCCTGAGGTCTTTAGAGATGTTAATTTTCAAGAGAAGATGGAGATTATGAGGAAGAGGGACTTCTTGAACGAGAAGGGATTTTCAAGCCGAGCACGAACCTTGCCTGATTTTGTAACAAAGGTCATCACCCAATATAAATGGCAAGAGTTCTGTGCTCACCGTCAAGAGGTCGTGGTGCCTCTAGTCCGAGAGTTTTATGCAGGGTTGAGGGAGTATCATCAGAGAAGATATCCTGTCCTGTTGGAGAAAGAGAGTGGGGAAGTATTTTTTGGGTCTCTCATAACCCAATTATGTCAGAGAGTCAAGATCGTTCCTGGTAAAGATGAGAAACAACACTTTTTCAGGCCCACTATTGACTTGCCTCTGATCGGGAAGCTTCAACAAAACAATGCTCAAAGGCCTACACCATCATCAGAGGTCCTTGCATTTGCCTTCCGTCAGCTAGACCGCATTGAGGATAAGTTGAAAACCTATTGGGTCTATGCGAAGGAAAGAGATGAAGCAATTAGAGAGTTTTATCTCTCTATCACCCTAAGCATTTCCCCTGTTTTCCCTAAATTCCCTCAAGTCTTGCTGCCTCAAGAAGAAAAAGAACCTGAAGATGAAGATGAAGAAGATGAAGAGAGTTCCTCAGAGGAGGAATAG

Protein sequence

MDTSPVPPATTPTKPKVKTPKVASPKNPFPEVFRDVNFQEKMEIMRKRDFLNEKGFSSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLREYHQRRYPVLLEKESGEVFFGSLITQLCQRVKIVPGKDEKQHFFRPTIDLPLIGKLQQNNAQRPTPSSEVLAFAFRQLDRIEDKLKTYWVYAKERDEAIREFYLSITLSISPVFPKFPQVLLPQEEKEPEDEDEEDEESSSEEE
Homology
BLAST of Spg008130 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-05
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 43  EIMRKRDFLNEKGF---SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLR 102
           E ++ R    EKGF   +S+    P F+  VITQ+ WQ FCAH ++ +VPLVREFYA + 
Sbjct: 27  ENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMT 86

Query: 103 E-----YHQRRYPVLLEKESGEVFFG 121
                  + R   VLL  E+    +G
Sbjct: 87  NPDDDTVYVRGVQVLLSSEAINTIYG 112

BLAST of Spg008130 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-04
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 43 EIMRKRDFLNEKGF---SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGL 99
          E ++ R    EKGF   +S+    P F+  VITQ+ WQ FCAH ++++ PLVREFYA +
Sbjct: 27 ENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVREFYANM 85

BLAST of Spg008130 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-03
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 45  MRKRDFLNEKGF----SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLRE 101
           ++ R    EKGF    S     LP F+ +VITQ+ W++FCAH ++ +VPLVREFYA L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 96

BLAST of Spg008130 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 42.7 bits (99), Expect = 5.1e+00
Identity = 41/163 (25.15%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 112 KESGEVFFGSLITQLCQRVKIVPGKDEKQHFFRPTIDLPLIGKLQQ----NNAQRPTPSS 171
           +++G +FF SLIT+LC+  +     +E++      ID   + ++ Q     + Q+P+ S 
Sbjct: 227 RKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSR 286

Query: 172 EVLAFAFR-------QLDRIEDKL---------------------KTYWVYAKERDEAIR 231
              A + R       QL  +E +L                     + +W Y+KERD A++
Sbjct: 287 PATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALK 346

Query: 232 EFYLSITLSISPVFPKFPQVLLPQEEKEPEDEDEEDEESSSEE 243
           +   +      P FP FPQ +L   + E E E ++D  + + E
Sbjct: 347 KALQNNFTRPMPTFPAFPQEILKDLDYEYEAESDKDGSNEAAE 389


HSP 2 Score: 55.1 bits (131), Expect = 1.0e-03
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 45  MRKRDFLNEKGF----SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLRE 101
           ++ R    EKGF    S     LP F+ +VITQ+ W++FCAH ++ +VPLVREFYA L +
Sbjct: 29  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 87

BLAST of Spg008130 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-06
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 43  EIMRKRDFLNEKGF---SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLR 102
           E ++ R    EKGF   +S+    P F+  VITQ+ WQ FCAH ++ +VPLVREFYA + 
Sbjct: 27  ENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMT 86

Query: 103 E-----YHQRRYPVLLEKESGEVFFG 121
                  + R   VLL  E+    +G
Sbjct: 87  NPDDDTVYVRGVQVLLSSEAINTIYG 112

BLAST of Spg008130 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-05
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 43 EIMRKRDFLNEKGF---SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGL 99
          E ++ R    EKGF   +S+    P F+  VITQ+ WQ FCAH ++++ PLVREFYA +
Sbjct: 27 ENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVREFYANM 85

BLAST of Spg008130 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 45  MRKRDFLNEKGF----SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLRE 101
           ++ R    EKGF    S     LP F+ +VITQ+ W++FCAH ++ +VPLVREFYA L +
Sbjct: 29  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 87

BLAST of Spg008130 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 45  MRKRDFLNEKGF----SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLRE 101
           ++ R    EKGF    S     LP F+ +VITQ+ W++FCAH ++ +VPLVREFYA L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 96

BLAST of Spg008130 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 2.5e+00
Identity = 41/163 (25.15%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 112 KESGEVFFGSLITQLCQRVKIVPGKDEKQHFFRPTIDLPLIGKLQQ----NNAQRPTPSS 171
           +++G +FF SLIT+LC+  +     +E++      ID   + ++ Q     + Q+P+ S 
Sbjct: 227 RKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSR 286

Query: 172 EVLAFAFR-------QLDRIEDKL---------------------KTYWVYAKERDEAIR 231
              A + R       QL  +E +L                     + +W Y+KERD A++
Sbjct: 287 PATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALK 346

Query: 232 EFYLSITLSISPVFPKFPQVLLPQEEKEPEDEDEEDEESSSEE 243
           +   +      P FP FPQ +L   + E E E ++D  + + E
Sbjct: 347 KALQNNFTRPMPTFPAFPQEILKDLDYEYEAESDKDGSNEAAE 389


HSP 2 Score: 54.7 bits (130), Expect = 6.3e-04
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 43  EIMRKRDFLNEKGF---SSRARTLPDFVTKVITQYKWQEFCAHRQEVVVPLVREFYAGLR 101
           E ++K+    EKGF   +S       F+ +VI Q+ W++FCAH ++ +VPLVREFYA L 
Sbjct: 59  ENIQKQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPEDPIVPLVREFYANLT 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON65868.11.8e-0539.53hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PON42276.12.0e-0445.76hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
PON46472.11.0e-0346.67hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON46472.15.1e+0025.15hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5CXV18.8e-0639.53Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
A0A2P5B0K09.7e-0545.76Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE... [more]
A0A2P5AGA54.8e-0446.67Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5BCG44.8e-0446.67Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5BCG42.5e+0025.15Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008130.1Spg008130.1mRNA