Spg008060 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008060
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Location	scaffold4: 7504647 .. 7505171 (+)
RNA-Seq Expression	Spg008060
Synteny	Spg008060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCCCCGCCCACAATCCCCGCCGCCGCGAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGCCCGGCGCCGGCGCAGGCCTCGCCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCCCCGCCCACAATCCCCGCCGCCGCGAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGCCCGGCGCCGGCGCAGGCCTCGCCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCCCCGCCCACAATCCCCGCCGCCGCGAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGCCCGGCGCCGGCGCAGGCCTCGCCGGACGACGAGGAGTACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Homology

[Close]

BLAST of Spg008060 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 5.2e-71
Identity = 150/174 (86.21%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MAS TL+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL 
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAA-----VHHPRRRELLSLTASVLAAPWVLL 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPAQAS-NDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Spg008060 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 277.3 bits (708), Expect = 8.9e-71
Identity = 150/174 (86.21%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MAS TL+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL 
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAA-----IHHPRRRELLSLTASVLAAPWVLL 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]

BLAST of Spg008060 vs. NCBI nr
Match: XP_022988975.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 8.9e-71
Identity = 150/174 (86.21%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MAS  L+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL 
Sbjct: 1   MASRALLTPCTSKSQPLIIPPKPKSTISAAA-----VHHPRRRELLSLTASVLAAPWVLL 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Spg008060 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.6 bits (701), Expect = 5.7e-70
Identity = 150/174 (86.21%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MASPTL+TP TSKSQPL+VPLKPKS+ +AAA+T    H  RRREFLSLTASVLA  WVLF
Sbjct: 1   MASPTLITPSTSKSQPLIVPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAAAVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPALAS-SDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Spg008060 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.2 bits (700), Expect = 7.5e-70
Identity = 149/174 (85.63%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MASPTL+TP TSKSQPL++PLKPKS+ +AAA+T    H  RRREFLSLTASVLA  WVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAAAVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPALAS-SDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Spg008060 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.9e-49
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 21  LKPKSTTSAAASTAAPAHNPR-----RREFLSL--TASVLAAPWVLFRPAPAQASPDDEE 80
           L P   T  A+S + P   PR     RR+FLSL  T+++L        PAP  A+ +DEE
Sbjct: 15  LPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPAPVSAA-EDEE 74

Query: 81  YVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYS 140
           Y+KDT+ VISKVR+T++M K DPNVA AVAELRE+SNSWVAKYRKEKALLG+ASFRD+YS
Sbjct: 75  YIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYS 134

Query: 141 ALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           ALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 135 ALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Spg008060 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-05
Identity = 31/122 (25.41%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 52  VLAAPWVLFRPAPAQASPDD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRES 111
           V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES
Sbjct: 78  VVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKES 137

Query: 112 SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEK 171
              +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+
Sbjct: 138 IRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEE 197

[Close]

BLAST of Spg008060 vs. ExPASy TrEMBL
Match: A0A6J1JL33 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486175 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.3e-71
Identity = 150/174 (86.21%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MAS  L+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL 
Sbjct: 1   MASRALLTPCTSKSQPLIIPPKPKSTISAAA-----VHHPRRRELLSLTASVLAAPWVLL 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Spg008060 vs. ExPASy TrEMBL
Match: A0A6J1ESI1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437168 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.3e-71
Identity = 150/174 (86.21%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MAS TL+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL 
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAA-----IHHPRRRELLSLTASVLAAPWVLL 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPAQAS-NDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]

BLAST of Spg008060 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.4e-69
Identity = 150/174 (86.21%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T    H  RRREFLSLTASVLA  WVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTT-HHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAAAVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPALAS-SDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Spg008060 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.4e-69
Identity = 150/174 (86.21%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T    H  RRREFLSLTASVLA  WVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTT-HHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAAAVAELRESSNSWVAKYRKEK
Sbjct: 61  PPAPALAS-SDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           +LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Spg008060 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.5e-65
Identity = 144/174 (82.76%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLF 60
           MASPTL+TPCTSKSQ   +PLKPKST SAA +T       RRREFLSLTASVLA  +VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTP----TVRRREFLSLTASVLAPSFVLF 60

Query: 61  RPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
             +PA A+ DD EYVKDTNEVI KVRTTI MD+NDPNVAAAVA+LRESSN WVAKYRKEK
Sbjct: 61  PQSPALAASDD-EYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Spg008060 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 194.5 bits (493), Expect = 7.0e-50
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 21  LKPKSTTSAAASTAAPAHNPR-----RREFLSL--TASVLAAPWVLFRPAPAQASPDDEE 80
           L P   T  A+S + P   PR     RR+FLSL  T+++L        PAP  A+ +DEE
Sbjct: 15  LPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPAPVSAA-EDEE 74

Query: 81  YVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYS 140
           Y+KDT+ VISKVR+T++M K DPNVA AVAELRE+SNSWVAKYRKEKALLG+ASFRD+YS
Sbjct: 75  YIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYS 134

Query: 141 ALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           ALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 135 ALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Spg008060 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 31/122 (25.41%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 52  VLAAPWVLFRPAPAQASPDD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRES 111
           V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES
Sbjct: 78  VVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKES 137

Query: 112 SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEK 171
              +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+
Sbjct: 138 IRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEE 197

The following BLAST results are available for this feature:

BLAST of Spg008060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529218.1	5.2e-71	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_022930794.1	8.9e-71	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022988975.1	8.9e-71	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]	[more]
XP_023554625.1	5.7e-70	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]
KAG6572353.1	7.5e-70	85.63	Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of Spg008060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR64	9.9e-49	67.70	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9ZVZ9	3.0e-05	25.41	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of Spg008060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JL33	4.3e-71	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1ESI1	4.3e-71	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]
A0A6J1HZH1	2.4e-69	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1GKW7	2.4e-69	86.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]
A0A0A0K1S2	3.5e-65	82.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]

BLAST of Spg008060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03600.1	7.0e-50	67.70	photosystem II family protein	[more]
AT1G05385.1	2.1e-06	25.41	photosystem II 11 kDa protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 69..174 e-value: 1.4E-40 score: 140.0
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 25..170 e-value: 5.2E-34 score: 117.5
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..174
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 40..170 score: 23.727396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008060.1	Spg008060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071484	cellular response to light intensity
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II