Spg007462 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007462
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionsecE/sec61-gamma protein transport protein
Locationscaffold2: 398228 .. 400286 (+)
RNA-Seq ExpressionSpg007462
SyntenySpg007462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGACTAAAATAGGAAATAGAAATATGGTCGGAAAAGGATTTAAACCTATATATTAGTGAAAGATCCTTTTCAACCACATTGCAGTCAACTCGTTCGTTTTTCGTTTCAGTTTCCAATCATTCCCTCGGCGCCCCCATTCCCCATTTTCAAAATTTCTTTCTACTTCGCGGGGAATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGATCAAGAGATGCCACAAGCCTGATCGCAATGGTATGCCTTTCCTTTACCTCATCCGTTTTTGTGATATATACGAATCCATTTGAATGAATATAAAGATTAGGAACTACATTGTATTGTATTCTATTTTACGAATCTGATGAATTTTGCGGCAACGATTTTGACACAGAATTCACTAAGGTGGCCTTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATCTTCATTCCGATTAACAATATCATCGTCGGATCTGGATAGGTTTGATTCTCCTCAGAATATATCTATGCTTCTCTTCAGAAATTTCATTGACATTCTTGAATTTGTTGATGAGCGCGTAAGGATTTTCTACTTGTTATCTTGTAAAATTTTTCGTTGAGCCCGGCTAGGTTTTTATCGTAATGGACTCTTGCCATATTCTCTCGTAAGGATGATTTTCACAAATAATCAAATATAATAAAACTCTCGGCAAATTAAAATTCTCTGATTCTGCTCCGTTCTTGTTTACTAAGGCTTATTTTGTTTTTGCTTTTTTAGTTTAGCAATATAGATTGAACCTTTAACGTTAAGGTAGATAGATTGTTGTTCATTTATATGTGCCCCTGCTAATATTAGTTTCTGAACTTTGTATGCATCAATACTATGCTTTCAGGGTTGTGCGAGTGAAGTTCTTCGTTGGAGGCATTCTGATTTAACACAGTTCTCGCTGACGAATACTAAGCAGTTGCCAGTTGGGCAGTTTGTAATTTCCCGCCCTGATTTATTCTTGACAAGCAAACCTCATTTGATTATCTAATTAGAGTGTATATTTTCTTTTCCTAATTAATGAAGATTCTCAATTAGTATTCTCCCCTGGGATATTACTTATTTATTAAGATGGCCTTTATAAATATTGTATGGACCTTTTCTGTTCTTCTGTTGCCTTTAAACGCCCCCATTTTTATTCCACATTCCTCCTGTTATTGATAATTGACTTCCCAAGAGTGCAAGGGCCAATATTTCTAGAGATCTCAGCTTTGGTTGGCCGTGAGCTCTTAAGAACAGAGATAATTTGGGAATTGTTTAAGCCAGTAACTTATGAAGAAGTTGTGTCTAGTCTATTGCATTTGATTCTACATTCTGTAATTTTGAGCATTCTTTTGCTCTTTTCCTTTTTAAAATGCTGTCTCACTTTTAAAATGAATGATGGTGTACTCCTGTATGCATCATTTTCTCAGTTTATTAACTAAATGATGTATCTTATACAAATTTAGAAAAAAAATCTTATTGAAATATATCTATGTATCTATCATTATATCCTGCTCGCACCTTTCTTCTTTTTTCAGCGTCATAACCTCATTTTTTTTCTGTTGCCTCCACTTTCCATATCTATTCCCCTGCTCAAACTCCTTTTCACAGGATTGATTTCATGGTGCGAAGGTCTTCACTCAGAATGTGGAATGCCCATGTTTAAGGGAGATCTTTGGTCGTGATGTGCACTGTGAGATCAATGTCTTCACTCCTTTGGCAATATTCCCTGTGAGTTATTCTCTTTTATTGTCATAGAAATAGTTTCAAGAAACAAGAGTAAGAAGAGTGGGTAGAAGGAAAGTGCAGGATAAATCCACAAGTAAGATATTATCTAAGTTTTATCATCCTCGTCCACATCTCTCTCATCTTCCGGTGCTCCCCACTTTCTCCATTGGCTTTTTTGTTTCAGATAAATCCTTCTTTCAGCTCCCCATTCTATTTCACTCTCATTCTTTCACATGGTAAGCTTCACCCCGAATTGCTTAGATTGGCATCCATACACCATTCTTAA

mRNA sequence

ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGATCAAGAGATGCCACAAGCCTGATCGCAATGGGTTGTGCGAGTGAAGTTCTTCGTTGGAGGCATTCTGATTTAACACAGTTCTCGCTGACGAATACTAAGCAGTTGCCAGTTGGGCAGTTTGTCTTCACTCAGAATGTGGAATGCCCATGTTTAAGGGAGATCTTTGGTCGTGATGTGCACTGTGAGATCAATGTCTTCACTCCTTTGGCAATATTCCCTATAAATCCTTCTTTCAGCTCCCCATTCTATTTCACTCTCATTCTTTCACATGGTAAGCTTCACCCCGAATTGCTTAGATTGGCATCCATACACCATTCTTAA

Coding sequence (CDS)

ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGATCAAGAGATGCCACAAGCCTGATCGCAATGGGTTGTGCGAGTGAAGTTCTTCGTTGGAGGCATTCTGATTTAACACAGTTCTCGCTGACGAATACTAAGCAGTTGCCAGTTGGGCAGTTTGTCTTCACTCAGAATGTGGAATGCCCATGTTTAAGGGAGATCTTTGGTCGTGATGTGCACTGTGAGATCAATGTCTTCACTCCTTTGGCAATATTCCCTATAAATCCTTCTTTCAGCTCCCCATTCTATTTCACTCTCATTCTTTCACATGGTAAGCTTCACCCCGAATTGCTTAGATTGGCATCCATACACCATTCTTAA

Protein sequence

MDAIDSVVDPLRDFAKDSVRSRDATSLIAMGCASEVLRWRHSDLTQFSLTNTKQLPVGQFVFTQNVECPCLREIFGRDVHCEINVFTPLAIFPINPSFSSPFYFTLILSHGKLHPELLRLASIHHS
Homology
[Close]
BLAST of Spg007462 vs. TAIR 10
Match: AT4G24920.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVR 21
          MDAIDSVVDPLRDFAKDS+R
Sbjct: 1  MDAIDSVVDPLRDFAKDSIR 20

[Close]
BLAST of Spg007462 vs. TAIR 10
Match: AT5G50460.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVR 21
          MDAIDSVVDPLRDFAKDS+R
Sbjct: 1  MDAIDSVVDPLRDFAKDSIR 20

The following BLAST results are available for this feature:
BLAST of Spg007462 vs.
Match NameE-valueIdentityDescription
BLAST of Spg007462 vs.
Match NameE-valueIdentityDescription
BLAST of Spg007462 vs.
Match NameE-valueIdentityDescription
BLAST of Spg007462 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24920.14.2e-0495.00secE/sec61-gamma protein transport protein [more]
AT5G50460.14.2e-0495.00secE/sec61-gamma protein transport protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007462.1Spg007462.1mRNA