Spg007462 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007462
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	secE/sec61-gamma protein transport protein
Location	scaffold2: 398228 .. 400286 (+)
RNA-Seq Expression	Spg007462
Synteny	Spg007462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGACTAAAATAGGAAATAGAAATATGGTCGGAAAAGGATTTAAACCTATATATTAGTGAAAGATCCTTTTCAACCACATTGCAGTCAACTCGTTCGTTTTTCGTTTCAGTTTCCAATCATTCCCTCGGCGCCCCCATTCCCCATTTTCAAAATTTCTTTCTACTTCGCGGGGAATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGATCAAGAGATGCCACAAGCCTGATCGCAATGGTATGCCTTTCCTTTACCTCATCCGTTTTTGTGATATATACGAATCCATTTGAATGAATATAAAGATTAGGAACTACATTGTATTGTATTCTATTTTACGAATCTGATGAATTTTGCGGCAACGATTTTGACACAGAATTCACTAAGGTGGCCTTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATCTTCATTCCGATTAACAATATCATCGTCGGATCTGGATAGGTTTGATTCTCCTCAGAATATATCTATGCTTCTCTTCAGAAATTTCATTGACATTCTTGAATTTGTTGATGAGCGCGTAAGGATTTTCTACTTGTTATCTTGTAAAATTTTTCGTTGAGCCCGGCTAGGTTTTTATCGTAATGGACTCTTGCCATATTCTCTCGTAAGGATGATTTTCACAAATAATCAAATATAATAAAACTCTCGGCAAATTAAAATTCTCTGATTCTGCTCCGTTCTTGTTTACTAAGGCTTATTTTGTTTTTGCTTTTTTAGTTTAGCAATATAGATTGAACCTTTAACGTTAAGGTAGATAGATTGTTGTTCATTTATATGTGCCCCTGCTAATATTAGTTTCTGAACTTTGTATGCATCAATACTATGCTTTCAGGGTTGTGCGAGTGAAGTTCTTCGTTGGAGGCATTCTGATTTAACACAGTTCTCGCTGACGAATACTAAGCAGTTGCCAGTTGGGCAGTTTGTAATTTCCCGCCCTGATTTATTCTTGACAAGCAAACCTCATTTGATTATCTAATTAGAGTGTATATTTTCTTTTCCTAATTAATGAAGATTCTCAATTAGTATTCTCCCCTGGGATATTACTTATTTATTAAGATGGCCTTTATAAATATTGTATGGACCTTTTCTGTTCTTCTGTTGCCTTTAAACGCCCCCATTTTTATTCCACATTCCTCCTGTTATTGATAATTGACTTCCCAAGAGTGCAAGGGCCAATATTTCTAGAGATCTCAGCTTTGGTTGGCCGTGAGCTCTTAAGAACAGAGATAATTTGGGAATTGTTTAAGCCAGTAACTTATGAAGAAGTTGTGTCTAGTCTATTGCATTTGATTCTACATTCTGTAATTTTGAGCATTCTTTTGCTCTTTTCCTTTTTAAAATGCTGTCTCACTTTTAAAATGAATGATGGTGTACTCCTGTATGCATCATTTTCTCAGTTTATTAACTAAATGATGTATCTTATACAAATTTAGAAAAAAAATCTTATTGAAATATATCTATGTATCTATCATTATATCCTGCTCGCACCTTTCTTCTTTTTTCAGCGTCATAACCTCATTTTTTTTCTGTTGCCTCCACTTTCCATATCTATTCCCCTGCTCAAACTCCTTTTCACAGGATTGATTTCATGGTGCGAAGGTCTTCACTCAGAATGTGGAATGCCCATGTTTAAGGGAGATCTTTGGTCGTGATGTGCACTGTGAGATCAATGTCTTCACTCCTTTGGCAATATTCCCTGTGAGTTATTCTCTTTTATTGTCATAGAAATAGTTTCAAGAAACAAGAGTAAGAAGAGTGGGTAGAAGGAAAGTGCAGGATAAATCCACAAGTAAGATATTATCTAAGTTTTATCATCCTCGTCCACATCTCTCTCATCTTCCGGTGCTCCCCACTTTCTCCATTGGCTTTTTTGTTTCAGATAAATCCTTCTTTCAGCTCCCCATTCTATTTCACTCTCATTCTTTCACATGGTAAGCTTCACCCCGAATTGCTTAGATTGGCATCCATACACCATTCTTAA

mRNA sequence

ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGATCAAGAGATGCCACAAGCCTGATCGCAATGGGTTGTGCGAGTGAAGTTCTTCGTTGGAGGCATTCTGATTTAACACAGTTCTCGCTGACGAATACTAAGCAGTTGCCAGTTGGGCAGTTTGTCTTCACTCAGAATGTGGAATGCCCATGTTTAAGGGAGATCTTTGGTCGTGATGTGCACTGTGAGATCAATGTCTTCACTCCTTTGGCAATATTCCCTATAAATCCTTCTTTCAGCTCCCCATTCTATTTCACTCTCATTCTTTCACATGGTAAGCTTCACCCCGAATTGCTTAGATTGGCATCCATACACCATTCTTAA

Coding sequence (CDS)

ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGATCAAGAGATGCCACAAGCCTGATCGCAATGGGTTGTGCGAGTGAAGTTCTTCGTTGGAGGCATTCTGATTTAACACAGTTCTCGCTGACGAATACTAAGCAGTTGCCAGTTGGGCAGTTTGTCTTCACTCAGAATGTGGAATGCCCATGTTTAAGGGAGATCTTTGGTCGTGATGTGCACTGTGAGATCAATGTCTTCACTCCTTTGGCAATATTCCCTATAAATCCTTCTTTCAGCTCCCCATTCTATTTCACTCTCATTCTTTCACATGGTAAGCTTCACCCCGAATTGCTTAGATTGGCATCCATACACCATTCTTAA

Protein sequence

MDAIDSVVDPLRDFAKDSVRSRDATSLIAMGCASEVLRWRHSDLTQFSLTNTKQLPVGQFVFTQNVECPCLREIFGRDVHCEINVFTPLAIFPINPSFSSPFYFTLILSHGKLHPELLRLASIHHS

Homology

[Close]

BLAST of Spg007462 vs. TAIR 10
Match: AT4G24920.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 0


Query: 1  MDAIDSVVDPLRDFAKDSVR 21
          MDAIDSVVDPLRDFAKDS+R
Sbjct: 1  MDAIDSVVDPLRDFAKDSIR 20

[Close]

BLAST of Spg007462 vs. TAIR 10
Match: AT5G50460.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 0


Query: 1  MDAIDSVVDPLRDFAKDSVR 21
          MDAIDSVVDPLRDFAKDS+R
Sbjct: 1  MDAIDSVVDPLRDFAKDSIR 20

The following BLAST results are available for this feature:

BLAST of Spg007462 vs.


Match Name	E-value	Identity	Description

BLAST of Spg007462 vs.


Match Name	E-value	Identity	Description

BLAST of Spg007462 vs.


Match Name	E-value	Identity	Description

BLAST of Spg007462 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24920.1	4.2e-04	95.00	secE/sec61-gamma protein transport protein	[more]
AT5G50460.1	4.2e-04	95.00	secE/sec61-gamma protein transport protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007462.1	Spg007462.1	mRNA