Spg007409 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007409
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold7: 20042857 .. 20047506 (-)
RNA-Seq ExpressionSpg007409
SyntenySpg007409
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTTGTGAGCCAAAAATTACTTGAACTAGGTTTAATTTCAGGAGATAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACCAATTGGTTGAGAATCTCGTTTCCATTTTTTCAGGTAAGTTGTAGAGTGTTTCAAAAGGAAGAGTTTGATGTATAGTACCTTAATTTTGGTTAAGTATTAAGGAAGTTATGGGTGTTGGAAGGTGTGGTATTGAATCTAGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAGCTAATTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAAGGAACTAGCTAAGACTGTGAGTGACAAAACGAATTTCGAAAATTGTTTCCAAACAGTTGTTCATGTTTAGATGTTTTGTTGGCACCCTATGCACAAACACTTAAGGAAACACGAATTAAAGACCAAATCAATCCGAACCCAACGATAGCGTTGTTTCCTTAAGACAATTTTGTTCCCTCTATGGTGCTCAAGGTATCACGAACAATTGTCTCCCAGGATAGGATGGATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATTTAAGTAATCGTACAAAGAAAAGTAGGAGAAGAGTTTTTGAAAGAAGAGTTTGTGTCTTGTTCTTGTATTTTGTATTCAAAACTCAAAATGAATCACATATTTATAGACTATTTATGGCCATTCAAATAGTCACATCTTTTCATGTAAGGGTTGTGTCTTTTGATAAATGGACACATCCATTCACATAAGGTTGTATCCTTTTCCAATGGACACATCTATTCACATAAGGTTGTATCCTTTTCCAAAAGACACACCCTTTCACATAGGGTTGTGTCCTTTACAAAAGACACACCTTTTCACATAGGGTTGTGTCCTTTACAAAGGACATACCCTTTCACGTAAAGTTGTGATTCTTTATTTTATTAAAATAATTTTATTCATAAATCCAACAATCCCCCACATGAATGAAATTTATTTTAAAAACGTGTACGATTACTCATGAAGGATAACTACGTCAGGATAAGTAGTCTCAGACTTTGAACTTTCCTTAGTAAAAACTATGGAGTTTACATGGCTGATCAGTAGTTAAAAAACTTTGAACTGTCAACTGTAGGAGTAAATCAAATCCATAATAATTACATAGATATTCTTCGAAATACGCTTGGTTCTCATGTTTGTATTCATTTTGGCCCTGAATACCGCCTGGTTTCATGAGTGTTTTTAGAGAATTCAGCCTTAAAAATTCTCATAGAAGCGGCCCCTTCACACCCACATAGGTGACTTCTTTAAAGAGTATCCTGGTAATACCCCACTCTTATAAAAGTGCTAAAGAGTCATTAAAAGTATATCTTAACCTCATCCGTTCCCAGGTTAGCACTATAATAATAGGAATGGTTAGGAATTCATGATTCCTTCTTAGTGCTCCACTGAGTTGTATACATAAATTTGTTTTCCCTTTTGAACCTAGATCTTGGGATCTCCAGTCAGCTAGGTTGGGTTACCATTATGTCCACTCTTATTTTATAGGCTTCAAACCCATTCCTATTGAAGACAATTTCACTTGCTCTCTTGCCAAAGCTTTCGTAAGCGGATCCACAATATTATCTTTTGATTTCATGTAATCAATAGATATAATTCCATTCGAGAGCAATTTTCTTATGGTATTATGTCTTCGACGTATATGTCGAGACTTACCATTATACATCAAGTTTTGTGCTCTTCCAATAGCATCTTGACTATCGCAATGTATACATATTGGGGGTACGAGTTTAGTCCAATTAGGAATATCTTCCAAAAAGTTACGTAGCCATTCGGCTTCTTCCCCTGCTTTGTCCAAAGCTATGAATTCAGATTCCATAGTGGACCTTGCTATACAAGTTTGTTTAGAAGATTTCCAGGATATAACTCCACTTCCAAGTGTAAAAATATATCCACTTTGCCAATCACCCCCACACTTTCATAAATTTATAAGTCGGTTTTTGACATTTCCATAATTCATATGGAATTTTCTGTGTTTTCTTATACAGAGTTCTATTCAGGATATAATTTGTTGCAAGCAACGCTTTCCCCCCACAAATTTTGTGGTAATCCTGAACTAATCAACATAGCGTTCATCATTTCTTTCAATGTTCGATTTTTTCATTCTGCTATGCCATTTGATTGTCAGAGTCAGGAACGTTAGGGGCGCACTCGGTTCCCTTATGATGGTTCACTGACAGACATTTTTTCAGCTTGAATCTCATGTAAGAGAACTTGAAGTTCTTGAACCTGGCTTATGACGGTTCTGGAATCAACCATTTTATAGTCTAGAAATTTTCCAACTATAAATTTCTTTACTCCAGCATCCTCCGTCTTATATTTCTTTTCCAGTGATTCCCAAAGACTTTTGCCGAATCAACCCCACTGTAAACATTATATAGTGTGTTGTCCAGTCCATTCAAGATATAGTTCCTGCACAAATATTCTGCATGTTTCCATGCCTCAAGTGCCAGCAACTTTTCTTTGTCGGTTTCTCCTTCATCCAGAACAGGAGCATCTTCTTTGAGAAATCTTGCCAGACTCAATGTTGTGAGATAGAACAACATCTTTTGTTGCCAACGTTTGAAGTCACTGCCATTGAACTTCTCAGGCTTTTCCCCATAATTTCCACCACCTTGTGGTATGGGACTCGGTGTCTTCGGTATTATTGAAGACATTTAAAATTGTCTTAAGATTGTTGGCACCCTTTGCACAAACACTTAAGGAAACAAGAATTAAAGACCAAATCAATCTGAACCCAACGATAGCGTTGTTTCCTTAAGACAATTTTGTTCCCTCTATGGTGCTCAAGGTATCACGAACAATTGTCTCCCAGGATAGGACGTATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATTTAAGTAATCGTACAGAGAAAAGTAGGATAAGAGTTTTTGAAAGAAGAGTTTGTGTCTTGTTCTTGTATTTTGTATTCAAAACTCAAAATGAATCACATATTTATAGACTATTTGTGGCCATTCAAATAGTCACATCTTTTCATGTAAGGGTTGTGTCTTTTGATAAATGGACACATCCATTCACATAAGGTTGTATCCTTTTCCAATGGACACATCCATTCACATAAGGTTGTATCCTTTTCCAAAAGACACACCCTTTCACATAGGGTTGTGTCCTCAAAAGACACACCTTTTCACATAGGGTTGTGTTCTTTACAAAGGACATACCCTTTCACGTAAAGTTGTGATTCTTTATTTTATTAAAATAATTTTATTCATAAATCCAACATGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAATGGTTTAAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCATGCATGTATTAGCAAGAATTATTTAAAGATTTTCAGTTTTTATTCCCCGAGCAAGCTGAGTAAGCTTGGGTTTTACGAAAGATAACGATAAGCAGGCATGTTTAAACGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATTGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTCTGATGTACTTGATATGCCTTGCTAGATTTTTAATGATGAACCTGCGATGTTTTTGAGAAAGCTTTTATCATAGCACGTTTATGTTTAACGCCTTGGTTGAGCAGCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTTCGAGTGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTAAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGATCGTGGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGCTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTGAAAAGTTTTCAAGGATTCCGCTGAGTTGTGTTTCACGTAGAATATTTTATATCTAAGATTAGTATGCTTATCAGGTTCAACGTTCCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTGCCTTTTAG

mRNA sequence

ATGGATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATCACGAACAATTGTCTCCCAGGATAGGACGTATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAACGTTCCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTGCCTTTTAG

Coding sequence (CDS)

ATGGATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATCACGAACAATTGTCTCCCAGGATAGGACGTATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAACGTTCCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTGCCTTTTAG

Protein sequence

MDYPPMNVALQSQDSRTLVSRTIVSQDRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVAF
Homology
[Close]
BLAST of Spg007409 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 27  DRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIF 86
           D+T    ++     +D+  +VEIELPVPDTLPTSAES          +  DDV WLHA+F
Sbjct: 68  DKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRSTGIVRGDDVCWLHAVF 127

Query: 87  RTKLAGGPGGGVT 100
           R K AGGPGGGVT
Sbjct: 128 RAKTAGGPGGGVT 140

[Close]
BLAST of Spg007409 vs. NCBI nr
Match: TYK00845.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 33  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAG 92
           P++     +D+  + EIELPVPDTL TSAESS         +  DDV WLHAIFR K+ G
Sbjct: 51  PLSTLSVLRDNDAVAEIELPVPDTLSTSAESSGSNSRSAGIVRGDDVCWLHAIFRAKIVG 110

Query: 93  GPGGGVT 100
           GPGGGVT
Sbjct: 111 GPGGGVT 117

[Close]
BLAST of Spg007409 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 42  DSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT 100
           D+  +VEIELPV DTLP SAESS         + EDDV WLH +FR K AGGPGGGVT
Sbjct: 128 DNDAIVEIELPVSDTLPMSAESSGSNSRSAGIVREDDVCWLHVVFRVKTAGGPGGGVT 185

[Close]
BLAST of Spg007409 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0 

Query: 33  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EE 92
           P++     +D+  +VEIELPVPDTLPTSAESS       + L                 E
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE 79

Query: 93  DDVRWLHAIFRTKLAGGPGGGV 99
           DDV WLHA+FR K AGGPGGGV
Sbjct: 80  DDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg007409 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0 

Query: 33  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EE 92
           P++     +D+  +VEIELPVPDTLPTSAESS       + L                 E
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE 79

Query: 93  DDVRWLHAIFRTKLAGGPGGGV 99
           DDV WLHA+FR K AGGPGGGV
Sbjct: 80  DDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg007409 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.5e-11
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 27  DRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIF 86
           D+T    ++     +D+  +VEIELPVPDTLPTSAES          +  DDV WLHA+F
Sbjct: 68  DKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRSTGIVRGDDVCWLHAVF 127

Query: 87  RTKLAGGPGGGVT 100
           R K AGGPGGGVT
Sbjct: 128 RAKTAGGPGGGVT 140

[Close]
BLAST of Spg007409 vs. ExPASy TrEMBL
Match: A0A5D3BNX1 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00060 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 33  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAG 92
           P++     +D+  + EIELPVPDTL TSAESS         +  DDV WLHAIFR K+ G
Sbjct: 51  PLSTLSVLRDNDAVAEIELPVPDTLSTSAESSGSNSRSAGIVRGDDVCWLHAIFRAKIVG 110

Query: 93  GPGGGVT 100
           GPGGGVT
Sbjct: 111 GPGGGVT 117

[Close]
BLAST of Spg007409 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-10
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 42  DSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT 100
           D+  +VEIELPV DTLP SAESS         + EDDV WLH +FR K AGGPGGGVT
Sbjct: 128 DNDAIVEIELPVSDTLPMSAESSGSNSRSAGIVREDDVCWLHVVFRVKTAGGPGGGVT 185

[Close]
BLAST of Spg007409 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0 

Query: 33  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EE 92
           P++     +D+  +VEIELPVPDTLPTSAESS       + L                 E
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE 79

Query: 93  DDVRWLHAIFRTKLAGGPGGGV 99
           DDV WLHA+FR K AGGPGGGV
Sbjct: 80  DDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg007409 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0 

Query: 33  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EE 92
           P++     +D+  +VEIELPVPDTLPTSAESS       + L                 E
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE 79

Query: 93  DDVRWLHAIFRTKLAGGPGGGV 99
           DDV WLHA+FR K AGGPGGGV
Sbjct: 80  DDVCWLHAVFRAKTAGGPGGGV 101

The following BLAST results are available for this feature:
BLAST of Spg007409 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060199.11.8e-1053.42uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9... [more]
TYK00845.16.7e-1055.22zf-CCHC domain-containing protein [Cucumis melo var. makuwa][more]
KAA0037515.11.1e-0962.07uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK... [more]
TYK27998.12.5e-0948.78reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.12.5e-0948.78reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg007409 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg007409 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BAD18.5e-1153.42Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BNX13.2e-1055.22Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BSA65.5e-1062.07Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DX391.2e-0948.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.2e-0948.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
BLAST of Spg007409 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007409.1Spg007409.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016740 transferase activity