Spg007239 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007239
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription termination factor MTEF1, chloroplastic
Locationscaffold9: 47930076 .. 47930802 (+)
RNA-Seq ExpressionSpg007239
SyntenySpg007239
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATTTCCGTAAAGCCTTCCGGGAGAATCCAGATTTCTCGCTCCGCCACTCTCTCCGCCCTCAAGTCCGTCGAGGTCTGTCTCTCCTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTCCTCGACATGTACCCTCAACTTCTCACTTCACACCCGGACTATGACCTTTACCCCATCTTCGATTTCCTTCTCAACGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAATTCGGTGCCCTAGAATTCTCGTCTCCGACCTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGTTTCGTTGGGTTGAATGCCATCACCTGCCAGACGACAATGCTACTGGTTTCAAGTGTCGAACACACGCTTTTGCCTAAGATTCAGTACCTTGAGAGCTTGGGCTTGTCGCACAAAGAGGTGGTTAATACGGTGTTAAGGTCTCCGGGGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTTTTTAGTAGACATGAAAGGTGATTTGTTGGAATTGAAAAGGTTTCTGCAATATTTTTCGTTTCGTTTGGAGAAAAAGATTAAGCCGCGTCATCGTTTGTTGGTTGAGCATGGATTGTCGCTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTTCAAGGTTGATAGAAATGCGATTGCAGTCGTTGACGGCAGATGGTTGA

mRNA sequence

ATGTCGATTTCCGTAAAGCCTTCCGGGAGAATCCAGATTTCTCGCTCCGCCACTCTCTCCGCCCTCAAGTCCGTCGAGGTCTGTCTCTCCTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTCCTCGACATGTACCCTCAACTTCTCACTTCACACCCGGACTATGACCTTTACCCCATCTTCGATTTCCTTCTCAACGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAATTCGGTGCCCTAGAATTCTCGTCTCCGACCTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGTTTCGTTGGGTTGAATGCCATCACCTGCCAGACGACAATGCTACTGGTTTCAAGTGTCGAACACACGCTTTTGCCTAAGATTCAGTACCTTGAGAGCTTGGGCTTGTCGCACAAAGAGGTGGTTAATACGGTGTTAAGGTCTCCGGGGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAATTAAGCCGCGTCATCGTTTGTTGGTTGAGCATGGATTGTCGCTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTTCAAGGTTGATAGAAATGCGATTGCAGTCGTTGACGGCAGATGGTTGA

Coding sequence (CDS)

ATGTCGATTTCCGTAAAGCCTTCCGGGAGAATCCAGATTTCTCGCTCCGCCACTCTCTCCGCCCTCAAGTCCGTCGAGGTCTGTCTCTCCTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTCCTCGACATGTACCCTCAACTTCTCACTTCACACCCGGACTATGACCTTTACCCCATCTTCGATTTCCTTCTCAACGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAATTCGGTGCCCTAGAATTCTCGTCTCCGACCTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGTTTCGTTGGGTTGAATGCCATCACCTGCCAGACGACAATGCTACTGGTTTCAAGTGTCGAACACACGCTTTTGCCTAAGATTCAGTACCTTGAGAGCTTGGGCTTGTCGCACAAAGAGGTGGTTAATACGGTGTTAAGGTCTCCGGGGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAATTAAGCCGCGTCATCGTTTGTTGGTTGAGCATGGATTGTCGCTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTTCAAGGTTGATAGAAATGCGATTGCAGTCGTTGACGGCAGATGGTTGA

Protein sequence

MSISVKPSGRIQISRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG
Homology
[Close]
BLAST of Spg007239 vs. NCBI nr
Match: XP_022945324.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_022945325.1 transcription termination factor MTEF1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 344.0 bits (881), Expect = 9.4e-91
Identity = 186/228 (81.58%), Postives = 194/228 (85.09%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQLLTS PDYDLYPIFDFLLNEVQIPF
Sbjct: 80  SRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPF 139

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT QTT+LLVSSVEHTLLPKI
Sbjct: 140 PDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKI 199

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           QYLE+LGLSHK+VVN VLRSP LLTYSIQNNLVP                          
Sbjct: 200 QYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFS 259

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLSKMLKVSDGEFT+RL+EMRLQS TADG
Sbjct: 260 LERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG 307

[Close]
BLAST of Spg007239 vs. NCBI nr
Match: KAG7013135.1 (Transcription termination factor MTEF1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.0 bits (881), Expect = 9.4e-91
Identity = 186/228 (81.58%), Postives = 194/228 (85.09%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQLLTS PDYDLYPIFDFLLNEVQIPF
Sbjct: 80  SRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPF 139

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT QTT+LLVSSVEHTLLPKI
Sbjct: 140 PDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKI 199

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           QYLE+LGLSHK+VVN VLRSP LLTYSIQNNLVP                          
Sbjct: 200 QYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFS 259

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLSKMLKVSDGEFT+RL+EMRLQS TADG
Sbjct: 260 LERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG 307

[Close]
BLAST of Spg007239 vs. NCBI nr
Match: XP_022968085.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022968086.1 transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 344.0 bits (881), Expect = 9.4e-91
Identity = 186/228 (81.58%), Postives = 194/228 (85.09%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQLLTS PDYDLYPIFDFLLNEVQIPF
Sbjct: 80  SRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPF 139

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT QTT+LLVSSVEHTLLPKI
Sbjct: 140 PDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKI 199

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           QYLE+LGLSHK+VVN VLRSP LLTYSIQNNLVP                          
Sbjct: 200 QYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFS 259

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLSKMLKVSDGEFT+RL+EMRLQS TADG
Sbjct: 260 LERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG 307

[Close]
BLAST of Spg007239 vs. NCBI nr
Match: XP_023542512.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542513.1 transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.0 bits (881), Expect = 9.4e-91
Identity = 186/228 (81.58%), Postives = 194/228 (85.09%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQLLTS PDYDLYPIFDFLLNEVQIPF
Sbjct: 80  SRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPF 139

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT QTT+LLVSSVEHTLLPKI
Sbjct: 140 PDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKI 199

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           QYLE+LGLSHK+VVN VLRSP LLTYSIQNNLVP                          
Sbjct: 200 QYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFS 259

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLSKMLKVSDGEFT+RL+EMRLQS TADG
Sbjct: 260 LERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG 307

[Close]
BLAST of Spg007239 vs. NCBI nr
Match: XP_022151208.1 (transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_022151209.1 transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_022151210.1 transcription termination factor MTEF1, chloroplastic [Momordica charantia])

HSP 1 Score: 340.9 bits (873), Expect = 8.0e-90
Identity = 184/228 (80.70%), Postives = 193/228 (84.65%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTS P+YDLYPIFDFLLNEV+IPF
Sbjct: 86  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPEYDLYPIFDFLLNEVRIPF 145

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSIIRCPRILVSDLDLQLRP L FLR+LGFVGLNAITCQTTMLLVSS+EHTLLPKI
Sbjct: 146 PDIRKSIIRCPRILVSDLDLQLRPTLLFLRNLGFVGLNAITCQTTMLLVSSIEHTLLPKI 205

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           +YLESLG SHK+VVN VLRSPGLLTYSIQNNLVP                          
Sbjct: 206 KYLESLGFSHKDVVNMVLRSPGLLTYSIQNNLVPKVDYFLGDMKGDLLELKRFPQYFSFS 265

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLS+MLKVSDGEFT+R+IEMRLQS TADG
Sbjct: 266 LERKIKPRHRLLVEHGLSLSLSRMLKVSDGEFTARVIEMRLQSATADG 313

[Close]
BLAST of Spg007239 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 2.8e-53
Identity = 120/238 (50.42%), Postives = 157/238 (65.97%), Query Frame = 0 

Query: 3   ISVKPSGRIQIS---RSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLY 62
           ++V P   ++++   RSA +S++ SVE  LSS GL   AVGR+LDM+P LLTS P+ ++ 
Sbjct: 43  LNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEIL 102

Query: 63  PIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTM 122
           P+  FL NE+ I   DI KSI RCPR+L+S +D QLRPAL FL+ LGFVG + IT + T+
Sbjct: 103 PVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTV 162

Query: 123 LLVSSVEHTLLPKIQYL-ESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP----------- 182
           LLVS+VE TL+PKI+YL E LG + +EV   V+RSP LLTYS+ NNLVP           
Sbjct: 163 LLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRG 222

Query: 183 ------------------KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQS 208
                             KIKPRHRLL EHG+ + LS+MLKVSDG+F   L+E+RL+S
Sbjct: 223 DVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWLLELRLRS 280

[Close]
BLAST of Spg007239 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10
Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 0 

Query: 29  LSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILV 88
           L  MG+   A+G +L  +P LLT+     + P+  FLL    +   DI K I   P +L 
Sbjct: 431 LQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLG 490

Query: 89  SDLDLQLRPALKFLRDLG--FVGLNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHKEV 148
             +  +L P +++   LG  F  L  +     MLL  +V++ L PK +YL    +     
Sbjct: 491 CSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDN-LRPKYRYLRRTMI---RP 550

Query: 149 VNTVLRSPGLLTYSIQNNLVPKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRL 201
           +  ++  P   +YS++  ++    PRH ++VE+ ++  L  ML  +D EF  R+
Sbjct: 551 LQDLIEFPRFFSYSLERRII----PRHTIMVENRVNFKLRYMLACTDEEFERRV 596

[Close]
BLAST of Spg007239 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-08
Identity = 51/199 (25.63%), Postives = 90/199 (45.23%), Query Frame = 0 

Query: 12  QISRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQI 71
           QI +    + LK+    L  +G+  S +G+++   P L +   +  L P   +L+ EV I
Sbjct: 245 QILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGI 304

Query: 72  PFPDIRKSIIRCPRILVSDLDLQLRPALKFL-RDLGFVGLNAITC--QTTMLLVSSVEHT 131
              D+ K +   P+ILV  LD+       FL ++LG    + +    +   LL  S++  
Sbjct: 305 KETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDG 364

Query: 132 LLPKIQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPK-------------------- 179
            LP+I +L S+G+ + +++  +     +L+ S+++NL PK                    
Sbjct: 365 FLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPM 424

[Close]
BLAST of Spg007239 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 0 

Query: 62  FDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTM-- 121
           +D+L N V I    +   + RCP+IL   LD +L P ++ L  LG       +  T    
Sbjct: 45  WDYLSNIVGIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPP 104

Query: 122 LLVSSVEHTLLPKIQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNL 166
           +L  SVE  L P + + ++LG+   ++   +L +P L++YSI   L
Sbjct: 105 ILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKL 150

[Close]
BLAST of Spg007239 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-04
Identity = 38/161 (23.60%), Postives = 76/161 (47.20%), Query Frame = 0 

Query: 12  QISRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQI 71
           ++S   T  AL+   + L  +GL L  +  +   +        D  + P+ +FLL ++ I
Sbjct: 186 RVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLL-DLGI 245

Query: 72  PFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLN--AITCQTTMLLVSSVEHTL 131
           P  DI   + + P+I    L   L+P + FL  LG +  N  A        +++     L
Sbjct: 246 PKSDIPTILCKRPQICGISLTDNLKPTMAFLETLG-IDKNQWAKIISRFPAILTYSRQKL 305

Query: 132 LPKIQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPKIK 171
              +++L   GL+ +++   + R P +++YS+++ L P ++
Sbjct: 306 TSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTME 344

[Close]
BLAST of Spg007239 vs. ExPASy TrEMBL
Match: A0A6J1HTW2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467425 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.5e-91
Identity = 186/228 (81.58%), Postives = 194/228 (85.09%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQLLTS PDYDLYPIFDFLLNEVQIPF
Sbjct: 80  SRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPF 139

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT QTT+LLVSSVEHTLLPKI
Sbjct: 140 PDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKI 199

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           QYLE+LGLSHK+VVN VLRSP LLTYSIQNNLVP                          
Sbjct: 200 QYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFS 259

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLSKMLKVSDGEFT+RL+EMRLQS TADG
Sbjct: 260 LERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG 307

[Close]
BLAST of Spg007239 vs. ExPASy TrEMBL
Match: A0A6J1G0M2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449597 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.5e-91
Identity = 186/228 (81.58%), Postives = 194/228 (85.09%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQLLTS PDYDLYPIFDFLLNEVQIPF
Sbjct: 80  SRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPF 139

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT QTT+LLVSSVEHTLLPKI
Sbjct: 140 PDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKI 199

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           QYLE+LGLSHK+VVN VLRSP LLTYSIQNNLVP                          
Sbjct: 200 QYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFS 259

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLSKMLKVSDGEFT+RL+EMRLQS TADG
Sbjct: 260 LERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG 307

[Close]
BLAST of Spg007239 vs. ExPASy TrEMBL
Match: A0A6J1DAK3 (transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019187 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.9e-90
Identity = 184/228 (80.70%), Postives = 193/228 (84.65%), Query Frame = 0 

Query: 14  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPF 73
           SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTS P+YDLYPIFDFLLNEV+IPF
Sbjct: 86  SRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPEYDLYPIFDFLLNEVRIPF 145

Query: 74  PDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKI 133
           PDIRKSIIRCPRILVSDLDLQLRP L FLR+LGFVGLNAITCQTTMLLVSS+EHTLLPKI
Sbjct: 146 PDIRKSIIRCPRILVSDLDLQLRPTLLFLRNLGFVGLNAITCQTTMLLVSSIEHTLLPKI 205

Query: 134 QYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP-------------------------- 193
           +YLESLG SHK+VVN VLRSPGLLTYSIQNNLVP                          
Sbjct: 206 KYLESLGFSHKDVVNMVLRSPGLLTYSIQNNLVPKVDYFLGDMKGDLLELKRFPQYFSFS 265

Query: 194 ---KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTADG 213
              KIKPRHRLLVEHGLSLSLS+MLKVSDGEFT+R+IEMRLQS TADG
Sbjct: 266 LERKIKPRHRLLVEHGLSLSLSRMLKVSDGEFTARVIEMRLQSATADG 313

[Close]
BLAST of Spg007239 vs. ExPASy TrEMBL
Match: A0A5D3D1U5 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00330 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.8e-83
Identity = 172/226 (76.11%), Postives = 184/226 (81.42%), Query Frame = 0 

Query: 15  RSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPFP 74
           RSA+LS LKSVEVCLSSMGL+ SAVGRVLDMYP+LLTS+PDYD+YPIFDFLLNEVQIPFP
Sbjct: 82  RSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSNPDYDIYPIFDFLLNEVQIPFP 141

Query: 75  DIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQ 134
           DI KSIIRCPRILVSDLD QLRPALKFLRDLGFVGL AITCQTT+LLVS+VEHTLLPKIQ
Sbjct: 142 DIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAITCQTTLLLVSNVEHTLLPKIQ 201

Query: 135 YLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP--------------------------- 194
           +LESLGLSH++VVN VLRSPGLLTYSIQNNLVP                           
Sbjct: 202 FLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFLGDMKGDLLELKSFPQYFSFNL 261

Query: 195 --KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTAD 212
             KIKPRHR LVEHGLSL LSKMLKVSDGEF + L EMR +SL AD
Sbjct: 262 ERKIKPRHRSLVEHGLSLPLSKMLKVSDGEFNAWLTEMRCRSLMAD 307

[Close]
BLAST of Spg007239 vs. ExPASy TrEMBL
Match: A0A1S3BFK9 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489133 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.8e-83
Identity = 172/226 (76.11%), Postives = 184/226 (81.42%), Query Frame = 0 

Query: 15  RSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPFP 74
           RSA+LS LKSVEVCLSSMGL+ SAVGRVLDMYP+LLTS+PDYD+YPIFDFLLNEVQIPFP
Sbjct: 82  RSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSNPDYDIYPIFDFLLNEVQIPFP 141

Query: 75  DIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQ 134
           DI KSIIRCPRILVSDLD QLRPALKFLRDLGFVGL AITCQTT+LLVS+VEHTLLPKIQ
Sbjct: 142 DIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAITCQTTLLLVSNVEHTLLPKIQ 201

Query: 135 YLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP--------------------------- 194
           +LESLGLSH++VVN VLRSPGLLTYSIQNNLVP                           
Sbjct: 202 FLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFLGDMKGDLLELKSFPQYFSFNL 261

Query: 195 --KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQSLTAD 212
             KIKPRHR LVEHGLSL LSKMLKVSDGEF + L EMR +SL AD
Sbjct: 262 ERKIKPRHRSLVEHGLSLPLSKMLKVSDGEFNAWLTEMRCRSLMAD 307

[Close]
BLAST of Spg007239 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.0e-54
Identity = 120/238 (50.42%), Postives = 157/238 (65.97%), Query Frame = 0 

Query: 3   ISVKPSGRIQIS---RSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLY 62
           ++V P   ++++   RSA +S++ SVE  LSS GL   AVGR+LDM+P LLTS P+ ++ 
Sbjct: 42  LNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEIL 101

Query: 63  PIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTM 122
           P+  FL NE+ I   DI KSI RCPR+L+S +D QLRPAL FL+ LGFVG + IT + T+
Sbjct: 102 PVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTV 161

Query: 123 LLVSSVEHTLLPKIQYL-ESLGLSHKEVVNTVLRSPGLLTYSIQNNLVP----------- 182
           LLVS+VE TL+PKI+YL E LG + +EV   V+RSP LLTYS+ NNLVP           
Sbjct: 162 LLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRG 221

Query: 183 ------------------KIKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRLIEMRLQS 208
                             KIKPRHRLL EHG+ + LS+MLKVSDG+F   L+E+RL+S
Sbjct: 222 DVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWLLELRLRS 279

[Close]
BLAST of Spg007239 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-35
Identity = 88/214 (41.12%), Postives = 124/214 (57.94%), Query Frame = 0 

Query: 16  SATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQIPFPD 75
           SA L +++SV   L S G+  + + R+L M P++LTS    +LYP+F FL N++ +P   
Sbjct: 81  SAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENA 140

Query: 76  IRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQY 135
            R+ I +CPR+L+S ++ QL+PAL +L+ LG   L A+  Q  +LLVSSVEHTL+PK+++
Sbjct: 141 FRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRF 200

Query: 136 LESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPK--------------------------- 195
           LES+G S  E +  +LR P L T+SI+NN  PK                           
Sbjct: 201 LESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLE 260

Query: 196 --IKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRL 201
             IKPRH   +E GL L LS MLK +D EF   L
Sbjct: 261 KRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

[Close]
BLAST of Spg007239 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-17
Identity = 69/230 (30.00%), Postives = 108/230 (46.96%), Query Frame = 0 

Query: 2   SISVKPSGRIQISRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQLLTSHPDYD---L 61
           S+ + P        +  LS + S    L S G+      R++ + PQL +  P +D   L
Sbjct: 45  SLGIVPQNPRLAPPANDLSVILSAVNLLKSKGISDEDFPRLVFLCPQLFS--PTFDISKL 104

Query: 62  YPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTT 121
            P+FDFL  E+     + R  I+ CP IL SD++  LRP L +L++LG   LN  +    
Sbjct: 105 DPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNA 164

Query: 122 MLLVSSVEHTLLPKIQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPK---------- 181
            +L + VE  L  K+++L+S+G  H+E      R P +  YS+++NL PK          
Sbjct: 165 HVLNTRVE-KLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMER 224

Query: 182 -------------------IKPRHRLLVEHGLSLSLSKMLKVSDGEFTSR 200
                              I+PRH  L +  + +SLS+ML   D +F S+
Sbjct: 225 ELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSK 271

[Close]
BLAST of Spg007239 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 69/217 (31.80%), Postives = 99/217 (45.62%), Query Frame = 0 

Query: 16  SATLSALKSVEVCLSS--MGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQI-P 75
           S  LSA++SV   +++  +   L    R++ M P+LLTS       P+  FLL EV +  
Sbjct: 99  STALSAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDS 158

Query: 76  FPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPK 135
             D+R+++ R PR+L   +D QLRP L FL+ +G +  +    + T LL  SV++ L+P+
Sbjct: 159 IFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH----KHTYLLSCSVDNKLVPR 218

Query: 136 IQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPK------------------------ 195
           I Y E LG S +       R P L  YSI  N  PK                        
Sbjct: 219 IDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSF 278

Query: 196 -----IKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRL 201
                IKPRH      G+   L  MLK ++  F   L
Sbjct: 279 SLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTL 311

[Close]
BLAST of Spg007239 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 69/217 (31.80%), Postives = 99/217 (45.62%), Query Frame = 0 

Query: 16  SATLSALKSVEVCLSS--MGLELSAVGRVLDMYPQLLTSHPDYDLYPIFDFLLNEVQI-P 75
           S  LSA++SV   +++  +   L    R++ M P+LLTS       P+  FLL EV +  
Sbjct: 99  STALSAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDS 158

Query: 76  FPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPK 135
             D+R+++ R PR+L   +D QLRP L FL+ +G +  +    + T LL  SV++ L+P+
Sbjct: 159 IFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH----KHTYLLSCSVDNKLVPR 218

Query: 136 IQYLESLGLSHKEVVNTVLRSPGLLTYSIQNNLVPK------------------------ 195
           I Y E LG S +       R P L  YSI  N  PK                        
Sbjct: 219 IDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSF 278

Query: 196 -----IKPRHRLLVEHGLSLSLSKMLKVSDGEFTSRL 201
                IKPRH      G+   L  MLK ++  F   L
Sbjct: 279 SLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTL 311

The following BLAST results are available for this feature:
BLAST of Spg007239 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945324.19.4e-9181.58transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_0... [more]
KAG7013135.19.4e-9181.58Transcription termination factor MTEF1, chloroplastic [Cucurbita argyrosperma su... [more]
XP_022968085.19.4e-9181.58transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022... [more]
XP_023542512.19.4e-9181.58transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pep... [more]
XP_022151208.18.0e-9080.70transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_... [more]
BLAST of Spg007239 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84X532.8e-5350.42Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX... [more]
F4IHL32.2e-1028.74Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O... [more]
Q9FM803.6e-0825.63Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O... [more]
Q9SZL61.1e-0431.13Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop... [more]
F4JVI31.8e-0423.60Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O... [more]
BLAST of Spg007239 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HTW24.5e-9181.58transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366... [more]
A0A6J1G0M24.5e-9181.58transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3... [more]
A0A6J1DAK33.9e-9080.70transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=... [more]
A0A5D3D1U57.8e-8376.11Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3BFK97.8e-8376.11transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
BLAST of Spg007239 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G03050.12.0e-5450.42Mitochondrial transcription termination factor family protein [more]
AT2G34620.11.2e-3541.12Mitochondrial transcription termination factor family protein [more]
AT3G18870.11.9e-1730.00Mitochondrial transcription termination factor family protein [more]
AT2G36000.13.3e-1731.80Mitochondrial transcription termination factor family protein [more]
AT2G36000.23.3e-1731.80Mitochondrial transcription termination factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 77..108
e-value: 9.6E-4
score: 28.4
coord: 147..182
e-value: 9.0
score: 15.2
coord: 111..142
e-value: 0.54
score: 19.3
coord: 40..72
e-value: 30.0
score: 13.5
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 99..165
e-value: 2.5E-7
score: 29.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 168..208
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 15..169
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 6..209
e-value: 7.7E-33
score: 115.7
NoneNo IPR availablePANTHERPTHR13068:SF36TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTICcoord: 168..208
NoneNo IPR availablePANTHERPTHR13068:SF36TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTICcoord: 15..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007239.1Spg007239.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding