Spg006640 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006640
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Myb_DNA-bind_3 domain-containing protein
Location	scaffold7: 48380307 .. 48384839 (-)
RNA-Seq Expression	Spg006640
Synteny	Spg006640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGGTGTTTACACGATGTGGTACGAATGTTCCAGCCAAGTACACGATTTTAGTGGCACCGTATACCAATCATACGAGAGGTGGGACGTCGCAGAAGTAGCTTATACTGCTTACACCATGGAAGTGGACAGTCATTCCGCTCATCATGGAGACCTTCACCTTCACACTAGCTCTCCTAACCGTGACCTAGATAGGAATGTAGTTAATAGGACTGTTAGCACATGTAGTGGAGCATACCATGTTCTCCTCTTCATAGTAGGGTTTTTGTTTGGTGTAGCTGTCGTCATATTAGGTAGTCTGATGTAGTATGGACATTTATTTTCAGGATTGTCCGTAGAGGCTATCAAATGGATGCCCAAGATAATGAAATTCAAGAATTGATAGCAATTCTTACTGTCATTTGTGCGACGCAGTATCAGTTCATCGCGTCAATTCTTGGGATCTTGCACTCGAGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACATCGAATCAGGCAACTAAATTTCTTTCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACACATGGATCGACGAACATTCACGAACCTGTTGGTGCGAGTGTGAACTGAATGGATGGAATGTGAGATAAGATGGATAATAATAAGGAAAAAATATTCAGCCAACACTTAAGTGCAAGTATACACTGTCGCACGTAGTAATAAAAAAAACCTTAGAAGTACTCCCAAGGGTATCGATCCCACGAGGACTAAATTGGAAATTCAGATTTGATGAAGAAACTGCTCAAATGATTGCTTTTGAAAAAGGTAACCAAAGAAAATAAGTTGATTGATTGGGTTTTTTAAAAGATAAATAAAACATGCAAATAACTAATAAAGAATAACAATAAGATAAAACGAGGTATTCAACATGGATTCATCCCTAAAGTAACAACCATACTTATGCAATATCTAACTTAAGAGTATTTAATGCATTGGGTCAGATTTAACTTCCATTTGGCGTTTGTTCCCAAAAACCGTTAGAAGGCTAAGCGAGTACCGTTATGCACATTTCTGTGACTCGACTCCGACATAGATAATTCACGAATGCAACCTATAACCCTATAATCGATATAGGGTGCCTTAGGCAGCTTGCCCTATACCGCCGAACAATCTCTTTCGAGCTTTTTCTCCTATATCACCTTTATGAGAATCGATATCGTTTGTCCCTTTCGATATCAAACTCACATAGCATGCAAAGTCTAAGTGATCAAATTAAACTCAGCAAGATCAGAATGATATTCAATAAAGAATGACATGCATTAAACTCTACTTAAGCAAATAAAACACTTTCAAGTCATTAAACCCTAAGGGAATTCACCACATTGAACCCCTCAACGGGTTTAGCTACTCATGATGGGATAAAATGCAAATGAACACATTTTCATTGAAATAATGATGTAAAGAATACAAAATAATGAAAAGATTCAAGAGTTGGAAATAAAGGAGATAGCTAAATATTATGGGTTTTTTTGTTTACACAATCCTTCTAGAGTTCGCTAAGACACTCCACTCTCTCACTTTTACAAGATGGGAATGGGTGAAACTCTCTACAAACCACAAGGTTTGATGTCTAACTCTCTCTCGGGTTAGAATTTGGTCATCTAAGAAGGACCTCGGGCATCCCTACTCATTGACGTCGAGCCAGGGTTCTGTCACCACCCTTTTCTTCCAAGTGAGTTTTGCTTGGATTTGACTTCGAATCCCGAGCTTATATAGTGTAGAAATTAGTTGAGGAGCTGCGAAATAGGTGCTGGAAGGTTGCCCAGTCAATTTCGGGGTCAAAACAACCGGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCGCGCACGACTCGGAACGGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCAAGTTTGCCTTCCCAGAAATGCGGTCGCAATTCTGGGGAATTCCAGCTTCTCCTCTGTTTTTCTGCACAACAGCAAACTAAGTCAAATTTGCTTCAAATCAAGTCTTTTTAAGCATAAATAAGCATAATTCAACAAAAGTGACTCTCAACACCCTAACTTATCAAATTAACATATTTTGAGCTCGAAAATAATAAAATTGACCTAAACACTCAATATTTGACTAAGAAATGAGCTAAATATAAGGGTAAAATAGGTATATTTTTTACCCTTATCACCTGTGTACCCTTCTACGGACCATTGGTAGACTGCAAGCCACTAACTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATCGTTGCACGGGACGTTAAGAATCGTGTGATCCGTCGTCAATTCGTGTGTTCGAGAGAGACCGTATCCTGGCACTTCAATGTCGTACTGGATGCGGTACTCCGATTTCACCCAGTCCTATTGAAAGCACCTGAACCAGTTACCAATGCGTGTACGGACGATAGGTGGAAGTGGTTTGAGGTAATTAGATGTTGTTATCTTGTCTTCCACTGGAAGACAACTTAACTTCAGGAAAATACTCAACCACTAAAACTTTATCCCTCGTCTGTTCGCATAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGCAGATCGCCCCAGATACCGAACGAGGAAGGGGGAGATTGCGACTAATGTACTAGCCGTTTGTTCCCAAAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATCGGACTCAAAGGTACTTCGTGATGCAGTCTCACGTCCTTCAGGCCTAAAGGTTCCCAGGGGCTACTACTACCTGTGTGATGCCGGATATCCTAACGCGAATGGATTCCTGGCACCATACCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCATCGGCATGGACTGTCATAGAACGAGCCTTCGGCATGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCGTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGTTGCTACCTTCATAACCTAATAACATGGGAGATGGGACAGGATCCTTCGATGGAGGCCACTCACACGGGGGAACAAGATTCCAACGGTATGGGAACAGACAACATCACATTCATTGAGTCCACCACTGCATGGAGTTCCTAGAGGGATGAATTGGTGAATCAAATGTTCACTGAATGGAACAACAACTAAGATGTTCGCCTCAACTTCTTTTGTCAATATTTTTTGTAACACGAGGCTGTAGAAAGTCCCACTCTTTTTTGTATATCGAACATGTCTTAAGAACAGTATGATGTAAATAGATCGTAATTGGCATACGTAAACATGTATATTTTGGAATGTAAATGGATTGCATTTTAACTGTTTATTGGCACCTATGTTCATTAAATTTTACTAGTATGGAACTTTGTAAATGTTCTTCCTTCTTTATGTCCTCCAACTCTGGTTCTGATTCTTTGTTAAAGATGCAGATGGTCGCGCCTGCCTCAGCTTCCAAGAAAGAGAAACACGTCTGGACACCAGACGAAGATGCAATGCTAGTGCAGTGCCTAGTTCACCTAGTCCAAGTGGGGGGATGGTGTGGAGATAATGGGACGTTTCGGCCTGGCTTCCAGAATCAACTTGGGAAGATGATGAAAGAAAGACTACCAGAATGCAACATAGTCGTGAGCCCGAACATTGAGTCTAGAGTGAAGCTGCTAAAAAAAAGTACATGGCGATAGCTAAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACGAGGAGAGGAAGTGCATAGAGGCAAAAAAGGAGATTTTTGATTTGTGGGTGGAGGTAAGTGAACAACGATCATAATTATGATATACATCTGATACACATTTCTACCTTCTGTCCGCTAACAAAACATTTATCTTCCACCTGTAGGGACATCCACAGGCCAAAGGCCTCCGTAACCGACCATTCTCGTGGTTCAATAAGTTGGCGCTCGTTTTCGGGAAGGACAGCTCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATAACACCTGAACCGGAGCCGATAGCCTATCTTGATGAAGACATGAACGTGGACTACGAGGATTGCTACGTCCCTAGTCCCCCAATTATTGATCCCACCCTTGGAGACAAATTCTGTGGGACACCGACTGGTAGGACGAGTAGTGCAGGACCTTCTAAGGTAGTATATAAGAGACGGTTGTCCATTGGGAACGTGGCGGAGGTACTGGAGAGTGGATTCCAAATGACTGCACAACATATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGTTGAAAGGAGTTGTATGCGGAGCTACAGTCCATTCCTGGAGTGTCTATAGAGGACGGCTTGGTGGTCGCACGGGCCCTACTATCAGATGAGAAGATGATGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTATTGTATGGAGATCCTCGGCAGGGAACCGAGACAGCCCCCGCAGCCATGA

mRNA sequence

ATGCCCGGTGTTTACACGATGTGGTACGAATGTTCCAGCCAAGTACACGATTTTAGTGGCACCGTATACCAATCATACGAGAGGTGGGACGTCGCAGAAGTAGCTTATACTGCTTACACCATGGAAGTGGACAGTCATTCCGCTCATCATGGAGACCTTCACCTTCACACTAGCTCTCCTAACCGTGACCTAGATAGGAATGTAGTTAATAGGACTGTTAGCACATGTAGTGGAGCATACCATGTTCTCCTCTTCATAGTAGGGATTGTCCGTAGAGGCTATCAAATGGATGCCCAAGATAATGAAATTCAAGAATTGATAGCAATTCTTACTGTCATTTGTGCGACGCAGTGCTGGAAGGTTGCCCAGTCAATTTCGGGGTCAAAACAACCGGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCGCGCACGACTCGGAACGGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCAAGTTTGCCTTCCCAGAAATGCGGTCGCAATTCTGGGGAATTCCAGCTTCTCCTCTACTGCAAGCCACTAACTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATCGTTGCACGGGACGTTAAGAATCGTGTGATCCGTCGTCAATTCGTGTGTTCGAGAGAGACCGTATCCTGGCACTTCAATGTCGTACTGGATGCGGTACTCCGATTTCACCCAGTCCTATTGAAAGCACCTGAACCAGTTACCAATGCGTGTACGGACGATAGGTGGAAGTGGTTTGAGATGGTCGCGCCTGCCTCAGCTTCCAAGAAAGAGAAACACGTCTGGACACCAGACGAAGATGCAATGCTAGTGCAGTGCCTAGTTCACCTAGTCCAAGTGGGGGGATGGTGTGGAGATAATGGGACGTTTCGGCCTGGCTTCCAGAATCAACTTGGGAAGATGATGAAAGAAAGACTACCAGAATGCAACATAGTCGGACATCCACAGGCCAAAGGCCTCCGTAACCGACCATTCTCGTGGTTCAATAAGTTGGCGCTCGTTTTCGGGAAGGACAGCTCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATAACACCTGAACCGGAGCCGATAGCCTATCTTGATGAAGACATGAACGTGGACTACGAGGATTGCTACGTCCCTAGTCCCCCAATTATTGATCCCACCCTTGGAGACAAATTCTGTGGGACACCGACTGGTAGGACGAGTAGTGCAGGACCTTCTAAGGTAGTATATAAGAGACGGTTGTCCATTGGGAACGTGGCGGAGCTACAGTCCATTCCTGGAGTGTCTATAGAGGACGGCTTGGTGGTCGCACGGGCCCTACTATCAGATGAGAAGATGATGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTATTGTATGGAGATCCTCGGCAGGGAACCGAGACAGCCCCCGCAGCCATGA

Coding sequence (CDS)

ATGCCCGGTGTTTACACGATGTGGTACGAATGTTCCAGCCAAGTACACGATTTTAGTGGCACCGTATACCAATCATACGAGAGGTGGGACGTCGCAGAAGTAGCTTATACTGCTTACACCATGGAAGTGGACAGTCATTCCGCTCATCATGGAGACCTTCACCTTCACACTAGCTCTCCTAACCGTGACCTAGATAGGAATGTAGTTAATAGGACTGTTAGCACATGTAGTGGAGCATACCATGTTCTCCTCTTCATAGTAGGGATTGTCCGTAGAGGCTATCAAATGGATGCCCAAGATAATGAAATTCAAGAATTGATAGCAATTCTTACTGTCATTTGTGCGACGCAGTGCTGGAAGGTTGCCCAGTCAATTTCGGGGTCAAAACAACCGGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCGCGCACGACTCGGAACGGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCAAGTTTGCCTTCCCAGAAATGCGGTCGCAATTCTGGGGAATTCCAGCTTCTCCTCTACTGCAAGCCACTAACTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATCGTTGCACGGGACGTTAAGAATCGTGTGATCCGTCGTCAATTCGTGTGTTCGAGAGAGACCGTATCCTGGCACTTCAATGTCGTACTGGATGCGGTACTCCGATTTCACCCAGTCCTATTGAAAGCACCTGAACCAGTTACCAATGCGTGTACGGACGATAGGTGGAAGTGGTTTGAGATGGTCGCGCCTGCCTCAGCTTCCAAGAAAGAGAAACACGTCTGGACACCAGACGAAGATGCAATGCTAGTGCAGTGCCTAGTTCACCTAGTCCAAGTGGGGGGATGGTGTGGAGATAATGGGACGTTTCGGCCTGGCTTCCAGAATCAACTTGGGAAGATGATGAAAGAAAGACTACCAGAATGCAACATAGTCGGACATCCACAGGCCAAAGGCCTCCGTAACCGACCATTCTCGTGGTTCAATAAGTTGGCGCTCGTTTTCGGGAAGGACAGCTCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATAACACCTGAACCGGAGCCGATAGCCTATCTTGATGAAGACATGAACGTGGACTACGAGGATTGCTACGTCCCTAGTCCCCCAATTATTGATCCCACCCTTGGAGACAAATTCTGTGGGACACCGACTGGTAGGACGAGTAGTGCAGGACCTTCTAAGGTAGTATATAAGAGACGGTTGTCCATTGGGAACGTGGCGGAGCTACAGTCCATTCCTGGAGTGTCTATAGAGGACGGCTTGGTGGTCGCACGGGCCCTACTATCAGATGAGAAGATGATGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTATTGTATGGAGATCCTCGGCAGGGAACCGAGACAGCCCCCGCAGCCATGA

Protein sequence

MPGVYTMWYECSSQVHDFSGTVYQSYERWDVAEVAYTAYTMEVDSHSAHHGDLHLHTSSPNRDLDRNVVNRTVSTCSGAYHVLLFIVGIVRRGYQMDAQDNEIQELIAILTVICATQCWKVAQSISGSKQPVRCEEDSSTTTRARLGTASVFPEMRSHFKFAFPEMRSQFWGIPASPLLQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLKAPEPVTNACTDDRWKWFEMVAPASASKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGTFRPGFQNQLGKMMKERLPECNIVGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPIEITPEPEPIAYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRRLSIGNVAELQSIPGVSIEDGLVVARALLSDEKMMTHFMDFPPEWKFDYCMEILGREPRQPPQP

Homology

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BLAST of Spg006640 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 1.0e-52
Identity = 134/378 (35.45%), Postives = 191/378 (50.53%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+AT YVDV+EMV +FLHIVA DVKNRV RR    S ETVS HFN VL+AVLR H +LLK
Sbjct: 19  LEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSRHFNAVLNAVLRLHEILLK 78

Query: 239 APEPVTNACTDD--------------RWKW-----------------FEMVAPASA---- 298
            P+PVT++C  D              R+++                  +M+  +S     
Sbjct: 79  QPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTTYVMLVIQMLKDSSLHTEM 138

Query: 299 ----SKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGTFRPGFQNQLGKMMKERLPECN 358
               SK  KH WT  ED +LV+CL+ LV+ GGW  DNGTF+ G+  Q   + +   P C+
Sbjct: 139 ASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPACS 198

Query: 359 ---------------------IVGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPI 418
                                + GHP A+GL N+PF +F  L +VFG+D + G R +TP+
Sbjct: 199 GFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPV 258

Query: 419 EITPEPEPIAYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRR 460
           E++ +       ++DM+++ ED  +P+P  ++P  G+    TPT  T  AG S+   KRR
Sbjct: 259 EMSSQTARDTE-EDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRR 318

[Close]

BLAST of Spg006640 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-52
Identity = 126/334 (37.72%), Postives = 174/334 (52.10%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+AT YVDVEEMV +FLHIVA DVKNRV RR F  S ETVS HFNVVL+ VLR H +LLK
Sbjct: 8   LEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLRLHEILLK 67

Query: 239 APEPVTNACTDDRWKWFEMVAPASASKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGT 298
            P+ VT++C+ ++W+WF+M   +  SK  KH WT  ED  LV+CL+ LV+ G W  DNGT
Sbjct: 68  QPDSVTHSCSHEKWRWFQMA--SINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGT 127

Query: 299 FRPGFQNQLGKMMKERLPECNI-------------------------------------- 358
           F+PG+  Q+ K+MKE++ E NI                                      
Sbjct: 128 FKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERK 187

Query: 359 -------------VGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPIEITPEPEPI 418
                         GH  A+ L N+PF +F  L +VFG+D + G + +TP+E+  +    
Sbjct: 188 CIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARD 247

Query: 419 AYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRRLSIGNVAEL 462
              ++DM ++ ED  +P+P  ++P  G+    TPT     AG S+   KRR         
Sbjct: 248 TE-EDDMIINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY------- 307

[Close]

BLAST of Spg006640 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 8.8e-52
Identity = 125/334 (37.43%), Postives = 173/334 (51.80%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+AT YVDVEEMV +FLHIVA DVKNRV RR F  S ETVS HFNVVL+ VLR H +LLK
Sbjct: 8   LEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLRLHEILLK 67

Query: 239 APEPVTNACTDDRWKWFEMVAPASASKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGT 298
            P+ VT++C+ ++W+WF+M   +  SK  KH WT  ED  LV+CL+ LV+ G W  DNGT
Sbjct: 68  QPDSVTHSCSHEKWRWFQMA--SINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGT 127

Query: 299 FRPGFQNQLGKMMKERLPECNI-------------------------------------- 358
           F+PG+  Q+ K+MKE++ E NI                                      
Sbjct: 128 FKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERK 187

Query: 359 -------------VGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPIEITPEPEPI 418
                         GH  A+ L N+PF +F  L +VFG+D + G + +TP+E+  +    
Sbjct: 188 CIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARD 247

Query: 419 AYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRRLSIGNVAEL 462
              ++DM ++ ED  +P+P  ++P  G+    TPT     AG  +   KRR         
Sbjct: 248 TE-EDDMIINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSFRPSKKRRSY------- 307

[Close]

BLAST of Spg006640 vs. NCBI nr
Match: KAA0033168.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK15357.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-41
Identity = 96/210 (45.71%), Postives = 123/210 (58.57%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L +T  VDVEEM+AMFLHI+A D+KNRVI+R F+ S ET+  HFN+VL A++R H  LLK
Sbjct: 19  LTSTKVVDVEEMIAMFLHILAHDMKNRVIQRHFMRSGETIFRHFNMVLLAIIRLHDELLK 78

Query: 239 APEPVTNACTDDRWKWFE-------------------MVAPASASKKEKHVWTPDEDAML 298
            P+PV N CTD RW+WFE                     + A+  +  KH    +E+  +
Sbjct: 79  KPQPVPNNCTDQRWRWFENCLDALDGTYIKVNVPAGDRPSIATTLRLPKHSCIKEEETWM 138

Query: 299 VQCLVHLVQVGGWCGDNGTFRPGFQNQLGKMMKERLPECNIVGHPQAKGLRNRPFSWFNK 358
           V+CLV LV VGGW  DNGTFR G+ NQL +MM  +        H   KGL NR F  ++K
Sbjct: 139 VECLVELVNVGGWRSDNGTFRAGYLNQLARMMAYK-------SHLATKGLLNRSFPHYDK 198

Query: 359 LALVFGKDSSRGVRARTPIEITPEPEPIAY 370
           L+ VFGKD + G RA T  E     +P  Y
Sbjct: 199 LSYVFGKDRATGGRAET-FEDVRSNDPTGY 220

[Close]

BLAST of Spg006640 vs. NCBI nr
Match: TYK02222.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 6.5e-39
Identity = 118/367 (32.15%), Postives = 172/367 (46.87%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+ T YVDVEEMVA+F HIVA DVKNRV RR F  S ET+S HFN V +AVLR H + LK
Sbjct: 19  LETTQYVDVEEMVAIFFHIVAHDVKNRVARRHFARSGETMSRHFNAVFNAVLRLHEIFLK 78

Query: 239 APEPVTNACTDDRWKWFE-----------------MVAPASASKK---EKHV-------- 298
            P+PVT++C+ ++W+WF+                 +  P   S+K    K+V        
Sbjct: 79  QPDPVTHSCSHEKWQWFQNCLDALDGTHIKVNVSMIDRPRYRSRKGDITKNVHGVSSQNG 138

Query: 299 --------W---------TPDEDAMLVQ-----------------CLVHLVQVGGWCGDN 358
                   W           D  ++ VQ                   ++ V+ GGW  DN
Sbjct: 139 EFIFVMPRWGGSTSYSRVLRDVVSLKVQKGYYYLCDAGYPNAEGFLPLYRVEEGGWRVDN 198

Query: 359 GTFRPGFQNQLGKMMKERLPECNIVGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRART 418
           GTF  G+  Q+ K+MKE++P  NI      +   N     +  +A + G+ +  G     
Sbjct: 199 GTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGR-ACNGFGCNE 258

Query: 419 PIEITPEPEPIAYLD--------EDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSA 476
             +   E E   + D        +DM+++ ED  +P+P  ++P  G+    TPT  T  A
Sbjct: 259 KRKCI-EAEKFVFDDWTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDA 318

[Close]

BLAST of Spg006640 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.0e-53
Identity = 134/378 (35.45%), Postives = 191/378 (50.53%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+AT YVDV+EMV +FLHIVA DVKNRV RR    S ETVS HFN VL+AVLR H +LLK
Sbjct: 19  LEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSRHFNAVLNAVLRLHEILLK 78

Query: 239 APEPVTNACTDD--------------RWKW-----------------FEMVAPASA---- 298
            P+PVT++C  D              R+++                  +M+  +S     
Sbjct: 79  QPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTTYVMLVIQMLKDSSLHTEM 138

Query: 299 ----SKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGTFRPGFQNQLGKMMKERLPECN 358
               SK  KH WT  ED +LV+CL+ LV+ GGW  DNGTF+ G+  Q   + +   P C+
Sbjct: 139 ASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPACS 198

Query: 359 ---------------------IVGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPI 418
                                + GHP A+GL N+PF +F  L +VFG+D + G R +TP+
Sbjct: 199 GFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPV 258

Query: 419 EITPEPEPIAYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRR 460
           E++ +       ++DM+++ ED  +P+P  ++P  G+    TPT  T  AG S+   KRR
Sbjct: 259 EMSSQTARDTE-EDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRR 318

[Close]

BLAST of Spg006640 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-53
Identity = 126/334 (37.72%), Postives = 174/334 (52.10%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+AT YVDVEEMV +FLHIVA DVKNRV RR F  S ETVS HFNVVL+ VLR H +LLK
Sbjct: 8   LEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLRLHEILLK 67

Query: 239 APEPVTNACTDDRWKWFEMVAPASASKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGT 298
            P+ VT++C+ ++W+WF+M   +  SK  KH WT  ED  LV+CL+ LV+ G W  DNGT
Sbjct: 68  QPDSVTHSCSHEKWRWFQMA--SINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGT 127

Query: 299 FRPGFQNQLGKMMKERLPECNI-------------------------------------- 358
           F+PG+  Q+ K+MKE++ E NI                                      
Sbjct: 128 FKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERK 187

Query: 359 -------------VGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPIEITPEPEPI 418
                         GH  A+ L N+PF +F  L +VFG+D + G + +TP+E+  +    
Sbjct: 188 CIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARD 247

Query: 419 AYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRRLSIGNVAEL 462
              ++DM ++ ED  +P+P  ++P  G+    TPT     AG S+   KRR         
Sbjct: 248 TE-EDDMIINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY------- 307

[Close]

BLAST of Spg006640 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-52
Identity = 125/334 (37.43%), Postives = 173/334 (51.80%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+AT YVDVEEMV +FLHIVA DVKNRV RR F  S ETVS HFNVVL+ VLR H +LLK
Sbjct: 8   LEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLRLHEILLK 67

Query: 239 APEPVTNACTDDRWKWFEMVAPASASKKEKHVWTPDEDAMLVQCLVHLVQVGGWCGDNGT 298
            P+ VT++C+ ++W+WF+M   +  SK  KH WT  ED  LV+CL+ LV+ G W  DNGT
Sbjct: 68  QPDSVTHSCSHEKWRWFQMA--SINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGT 127

Query: 299 FRPGFQNQLGKMMKERLPECNI-------------------------------------- 358
           F+PG+  Q+ K+MKE++ E NI                                      
Sbjct: 128 FKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERK 187

Query: 359 -------------VGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRARTPIEITPEPEPI 418
                         GH  A+ L N+PF +F  L +VFG+D + G + +TP+E+  +    
Sbjct: 188 CIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARD 247

Query: 419 AYLDEDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSAGPSKVVYKRRLSIGNVAEL 462
              ++DM ++ ED  +P+P  ++P  G+    TPT     AG  +   KRR         
Sbjct: 248 TE-EDDMIINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSFRPSKKRRSY------- 307

[Close]

BLAST of Spg006640 vs. ExPASy TrEMBL
Match: A0A5D3CTT8 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5393G00050 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-41
Identity = 96/210 (45.71%), Postives = 123/210 (58.57%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L +T  VDVEEM+AMFLHI+A D+KNRVI+R F+ S ET+  HFN+VL A++R H  LLK
Sbjct: 19  LTSTKVVDVEEMIAMFLHILAHDMKNRVIQRHFMRSGETIFRHFNMVLLAIIRLHDELLK 78

Query: 239 APEPVTNACTDDRWKWFE-------------------MVAPASASKKEKHVWTPDEDAML 298
            P+PV N CTD RW+WFE                     + A+  +  KH    +E+  +
Sbjct: 79  KPQPVPNNCTDQRWRWFENCLDALDGTYIKVNVPAGDRPSIATTLRLPKHSCIKEEETWM 138

Query: 299 VQCLVHLVQVGGWCGDNGTFRPGFQNQLGKMMKERLPECNIVGHPQAKGLRNRPFSWFNK 358
           V+CLV LV VGGW  DNGTFR G+ NQL +MM  +        H   KGL NR F  ++K
Sbjct: 139 VECLVELVNVGGWRSDNGTFRAGYLNQLARMMAYK-------SHLATKGLLNRSFPHYDK 198

Query: 359 LALVFGKDSSRGVRARTPIEITPEPEPIAY 370
           L+ VFGKD + G RA T  E     +P  Y
Sbjct: 199 LSYVFGKDRATGGRAET-FEDVRSNDPTGY 220

[Close]

BLAST of Spg006640 vs. ExPASy TrEMBL
Match: A0A5D3BTU3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00110 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.2e-39
Identity = 118/367 (32.15%), Postives = 172/367 (46.87%), Query Frame = 0


Query: 179 LQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVLRFHPVLLK 238
           L+ T YVDVEEMVA+F HIVA DVKNRV RR F  S ET+S HFN V +AVLR H + LK
Sbjct: 19  LETTQYVDVEEMVAIFFHIVAHDVKNRVARRHFARSGETMSRHFNAVFNAVLRLHEIFLK 78

Query: 239 APEPVTNACTDDRWKWFE-----------------MVAPASASKK---EKHV-------- 298
            P+PVT++C+ ++W+WF+                 +  P   S+K    K+V        
Sbjct: 79  QPDPVTHSCSHEKWQWFQNCLDALDGTHIKVNVSMIDRPRYRSRKGDITKNVHGVSSQNG 138

Query: 299 --------W---------TPDEDAMLVQ-----------------CLVHLVQVGGWCGDN 358
                   W           D  ++ VQ                   ++ V+ GGW  DN
Sbjct: 139 EFIFVMPRWGGSTSYSRVLRDVVSLKVQKGYYYLCDAGYPNAEGFLPLYRVEEGGWRVDN 198

Query: 359 GTFRPGFQNQLGKMMKERLPECNIVGHPQAKGLRNRPFSWFNKLALVFGKDSSRGVRART 418
           GTF  G+  Q+ K+MKE++P  NI      +   N     +  +A + G+ +  G     
Sbjct: 199 GTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGR-ACNGFGCNE 258

Query: 419 PIEITPEPEPIAYLD--------EDMNVDYEDCYVPSPPIIDPTLGDKFCGTPTGRTSSA 476
             +   E E   + D        +DM+++ ED  +P+P  ++P  G+    TPT  T  A
Sbjct: 259 KRKCI-EAEKFVFDDWTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDA 318

[Close]

BLAST of Spg006640 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-05
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 178 LLQATNYVDVEEMVAMFLHIVARDVKNRVIRRQFVCSRETVSWHFNVVLDAVL 231
           LL+ TN + +E  +A+FL I+  +++ R ++  F  S ET+S HFN VL+AV+
Sbjct: 65  LLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVI 117

The following BLAST results are available for this feature:

BLAST of Spg006640 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07921.1	1.0e-52	35.45	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
TYK26842.1	1.8e-52	37.72	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
KAA0033487.1	8.8e-52	37.43	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]
KAA0033168.1	4.1e-41	45.71	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK15357.1 putative nucleas...	[more]
TYK02222.1	6.5e-39	32.15	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of Spg006640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7T4	5.0e-53	35.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DTL0	8.5e-53	37.72	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SW62	4.2e-52	37.43	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CTT8	2.0e-41	45.71	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BTU3	3.2e-39	32.15	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Spg006640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	2.3e-05	41.51	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011320	Ribonuclease H1, N-terminal	PFAM	PF01693	Cauli_VI	coord: 2..33 e-value: 1.8E-6 score: 28.1
IPR037056	Ribonuclease H1, N-terminal domain superfamily	GENE3D	3.40.970.10		coord: 1..36 e-value: 2.2E-6 score: 30.0
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 323..366 coord: 260..324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006640.1	Spg006640.1	mRNA