Spg006507 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg006507
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold2: 48451691 .. 48452992 (+)
RNA-Seq ExpressionSpg006507
SyntenySpg006507
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGTGAAAGAGGGTGGGATGAGAGGAGAATAAGAGAAGCAGTTTCCCCATGTGACAGAGAAGACATCCTTAACATACCAAGATGTTCACCAAGCTCTAACGATGAGATTCTATGGGATGAAGACTCCAAAGGCGTCTTCTCGGTGAAGAGCGCATACAGATTAGCCTTAAATTTGGAGAGCTGCAAGGGAGCTTCATGCTCAGATGAGTTAAAAGATAAATCCCTGTGGAAGTCAGTGTGGAACATCCAATGCTTCCCAAGCGCGAAAGTGACTTTATGGAAAATTATTAATGATATTCTACCTACTTTTGGTAACATTAGAAAAAGAGGTATCCAAAATAATGGGGGGTGTTTCTTTTGCAGGAACAAAGAGGAGTCAACAGGGCACTTGTTCTGGAGGTGTAAGTTCTCTAAGATGGTTTGGCTAAATTTCTTTCCATCCTTATGGGATTTTTTCGTTGACTGCAGGGACAGGGGGGAGCTGATCAACCTCTGGGAAGCTATGATTAGCAAATTGGATGATAGAAACATAGCTCAGGCTACCATGATTTTGTGGAATCTATGGAACTACAGGAACAAATACAAGCACAATGGGAACCCTCCAAATTTACAAGAAGTGAGCAGAGCCATTTCAAGGAACCTGGAGGAGCTATCTAAGATGAAAGAATGAACCTGCCTTGCGGTGCTTTGGAGAACCAAGCGAGTCATCCAAATGCAGCCGTTCGGGAGAATCAGCCAAGACTCTCCAACATTTCTTCGCCCAGCCCCAATTTCTGGAGACTTTCTACAGATGCGTCGTGGACCGATGCAGCAAGCAGGGGTGGGTTAGGCTGGTCTTTGCATGACTCGAATGGGTCTCTGTATGCAATCGGTTGTAAGCAGGTGATCAGGAAATGGTCGATAAAGTGCCTTGAAGCTAAGGCGATCATGGAAGGGTTGAAGTCGTACCTGAATGATCGGGTGGACAACCCCCACGGGTTCAACCCACGAAGTCGTCAAGGTCATCAACGGAGAATGTGTTGATCTTTCAGAGTTAGCCTTGATCGCAAACGAAATTGAAGATCTCAGGGAGAAAGCAGATAATGTTTCTTTTGTCAAATGCCCGAGGGAGAAAGTCAAGGAGGCTCACAATCTGGCGAGAGCTTCAATTTCTCATGGGGATTTTGTTGGTTTTTTTGGGCGAGATCCTTTCCCCAATTTGGGGGATCTGACTCGCATGAGGGATGTTGTTTTCCCTCCGTGGATTTTAGATTGCTTAGTTAATGACGTTGGTGTAACTACCTGCCAGTTCTTTTAA

mRNA sequence

ATGGACAGTGAAAGAGGGTGGGATGAGAGGAGAATAAGAGAAGCAGTTTCCCCATGTGACAGAGAAGACATCCTTAACATACCAAGATGTTCACCAAGCTCTAACGATGAGATTCTATGGGATGAAGACTCCAAAGGCGTCTTCTCGGTGAAGAGCGCATACAGATTAGCCTTAAATTTGGAGAGCTGCAAGGGAGCTTCATGCTCAGATGAGTTAAAAGATAAATCCCTGTGGAAGTCAGTGAACAAAGAGGAGTCAACAGGGCACTTGGACAGGGGGGAGCTGATCAACCTCTGGGAAGCTATGATTAGCAAATTGGATGATAGAAACATAGCTCAGGCTACCATGATTTTGTGGAATCTATGGAACTACAGGAACAAATACAAGCACAATGGGAACCCTCCAAATTTACAAGAAAACCAAGCGAGTCATCCAAATGCAGCCGTTCGGGAGAATCAGCCAAGACTCTCCAACATTTCTTCGCCCAGCCCCAATTTCTGGAGACTTTCTACAGATGCGTCGTGGACCGATGCAGCAAGCAGGGGTGGGTTAGGCTGGTCTTTGCATGACTCGAATGGGTCTCTGTATGCAATCGGTTGTAAGCAGGTGATCAGGAAATGGTCGATAAAGTGCCTTGAAGCTAAGGCGATCATGGAAGGGTTGAAGTCGGAGAAAGCAGATAATGTTTCTTTTGTCAAATGCCCGAGGGAGAAAGTCAAGGAGGCTCACAATCTGGCGAGAGCTTCAATTTCTCATGGGGATTTTGTTGGTTTTTTTGGGCGAGATCCTTTCCCCAATTTGGGGGATCTGACTCGCATGAGGGATGTTGTTTTCCCTCCGTGGATTTTAGATTGCTTAGTTAATGACGTTGGTGTAACTACCTGCCAGTTCTTTTAA

Coding sequence (CDS)

ATGGACAGTGAAAGAGGGTGGGATGAGAGGAGAATAAGAGAAGCAGTTTCCCCATGTGACAGAGAAGACATCCTTAACATACCAAGATGTTCACCAAGCTCTAACGATGAGATTCTATGGGATGAAGACTCCAAAGGCGTCTTCTCGGTGAAGAGCGCATACAGATTAGCCTTAAATTTGGAGAGCTGCAAGGGAGCTTCATGCTCAGATGAGTTAAAAGATAAATCCCTGTGGAAGTCAGTGAACAAAGAGGAGTCAACAGGGCACTTGGACAGGGGGGAGCTGATCAACCTCTGGGAAGCTATGATTAGCAAATTGGATGATAGAAACATAGCTCAGGCTACCATGATTTTGTGGAATCTATGGAACTACAGGAACAAATACAAGCACAATGGGAACCCTCCAAATTTACAAGAAAACCAAGCGAGTCATCCAAATGCAGCCGTTCGGGAGAATCAGCCAAGACTCTCCAACATTTCTTCGCCCAGCCCCAATTTCTGGAGACTTTCTACAGATGCGTCGTGGACCGATGCAGCAAGCAGGGGTGGGTTAGGCTGGTCTTTGCATGACTCGAATGGGTCTCTGTATGCAATCGGTTGTAAGCAGGTGATCAGGAAATGGTCGATAAAGTGCCTTGAAGCTAAGGCGATCATGGAAGGGTTGAAGTCGGAGAAAGCAGATAATGTTTCTTTTGTCAAATGCCCGAGGGAGAAAGTCAAGGAGGCTCACAATCTGGCGAGAGCTTCAATTTCTCATGGGGATTTTGTTGGTTTTTTTGGGCGAGATCCTTTCCCCAATTTGGGGGATCTGACTCGCATGAGGGATGTTGTTTTCCCTCCGTGGATTTTAGATTGCTTAGTTAATGACGTTGGTGTAACTACCTGCCAGTTCTTTTAA

Protein sequence

MDSERGWDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGASCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAMISKLDDRNIAQATMILWNLWNYRNKYKHNGNPPNLQENQASHPNAAVRENQPRLSNISSPSPNFWRLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAKAIMEGLKSEKADNVSFVKCPREKVKEAHNLARASISHGDFVGFFGRDPFPNLGDLTRMRDVVFPPWILDCLVNDVGVTTCQFF
Homology
BLAST of Spg006507 vs. NCBI nr
Match: XP_024034843.1 (uncharacterized protein LOC112096145 [Citrus clementina])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-12
Identity = 59/241 (24.48%), Postives = 110/241 (45.64%), Query Frame = 0

Query: 1   MDSERGWDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNL 60
           +D +  W E +I +  +    + IL IP       D ++W  D  G +SV+S Y++AL +
Sbjct: 52  IDDKNQWKEEKIEQCFTKEVAQKILKIPLPRTPQEDILIWQFDKHGCYSVRSGYQVALKM 111

Query: 61  ESCKGASCSDELKD-----KSLWKSVNKEESTGHLDRGELINLWEAMISKLDDRNIAQAT 120
           +      CSD  K      + +WK  +  E    + +  ++++ + + S+   + + Q  
Sbjct: 112 KFPDNPECSDSSKTQWKAARKVWKLTDFYEDVKLMAQQGILSMLQGLASRRKKKELEQII 171

Query: 121 MILWNLWNYRNKYKHNG--NPPNLQENQASHPNAAVR----ENQPRLSNISSPSPNFW-- 180
            + W +W  RN++ + G    P L   +AS      R    +N P  S     S   W  
Sbjct: 172 AVCWAIWYARNRFMYEGKQQEPKLTAARASAILETYRRIKIQNGPARSIHHRNSQQIWKP 231

Query: 181 ------RLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAKAIMEGL 223
                 ++  DA+   +  + GLG  + +SN  + A   K+V  K ++ C+EA+AI+ G+
Sbjct: 232 PPDGKYKVDVDAAIQMSGPKAGLGVVIRNSNEKIIAAAVKRVCYKGTVACMEAEAILFGI 291

BLAST of Spg006507 vs. NCBI nr
Match: XP_031116510.1 (uncharacterized protein LOC116020169 [Ipomoea triloba])

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-09
Identity = 75/285 (26.32%), Postives = 110/285 (38.60%), Query Frame = 0

Query: 7   WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
           WD   +R+  +  D E ILN+P       D  +W+ DSKG ++VKS YR  L        
Sbjct: 97  WDHECVRDIFNTRDAELILNLPLSVRKPPDAWIWEPDSKGKYTVKSCYRKLL-------G 156

Query: 67  SCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAM-------------------ISKLD 126
              D+     LW    +  S   +D  E    W A+                   I KL+
Sbjct: 157 EFIDQKPWTKLWNMQVETASHLFMDCNETRRFWNAVGLPIAYYGNSVLTEWFFGNIVKLN 216

Query: 127 DRNIAQATMILWNLWNYRNKYKHNGNPPNLQENQASHPN-----AAVRENQP-------R 186
             ++ +  M  W LW  RN Y  NG P  + +   S  +       V E Q        R
Sbjct: 217 GDDLCKFAMFCWGLWYNRNDYVWNGVPYVMAQVIHSALSLWLAWKGVNEGQVVQSMHDIR 276

Query: 187 LSNISSPSPNFWRLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAK 246
               S PS    +L+TD + +   S  G+GW + D+ G       K+    +S+K  EA 
Sbjct: 277 TERWSPPSQGRLKLNTDVAMSMNNSCMGMGWVIRDAQGHFVTAKAKKFDGFFSVKEAEAV 336

Query: 247 AIMEGLKSEKADNVSFVKCPREKVKEAHNLARASISHGDFVGFFG 261
           +I E L   K  ++  V      +K    L   ++S   F   FG
Sbjct: 337 SIREALSWIKEMDIGDV-----DIKTDSQLVFYALSSEPFNNSFG 369

BLAST of Spg006507 vs. NCBI nr
Match: XP_031120971.1 (uncharacterized protein LOC116024211 [Ipomoea triloba])

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-08
Identity = 69/249 (27.71%), Postives = 99/249 (39.76%), Query Frame = 0

Query: 7   WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
           WD   +R+  +  D E ILN+P       D  +W+ DSKG ++VKS YR  L        
Sbjct: 683 WDHECVRDIFNTRDAELILNLPLSVRKPPDAWIWEPDSKGKYTVKSCYRKLLG------- 742

Query: 67  SCSDELKDKSLW-KSVNKEESTGHL--DRGELINLWEAM-------------------IS 126
               E  D+  W K  N + +  HL  D  E    W A+                   I 
Sbjct: 743 ----EFIDQKPWTKLWNMQVTASHLFMDCNETRRFWNAVGLPIAYYGNSVLTKWFFGNIV 802

Query: 127 KLDDRNIAQATMILWNLWNYRNKYKHNGNPPNLQENQASHPN-----AAVRENQP----- 186
           KL+  ++ +  M  W LW  RN Y  NG P  + +   S  +       V E Q      
Sbjct: 803 KLNGDDLCKFAMFCWGLWYNRNDYVWNGVPYVMAQVIHSALSLWLAWKGVNEGQVVQSTH 862

Query: 187 --RLSNISSPSPNFWRLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCL 222
             R    S PS    +L+ D + +   S  G+GW + D+ G   A   K+    +S+K  
Sbjct: 863 DFRTERWSPPSQGRLKLNMDVAMSMNNSCMGMGWVIRDAQGHFVAAKAKKFDGFFSVKEA 920

BLAST of Spg006507 vs. NCBI nr
Match: XP_023897447.1 (uncharacterized protein LOC112009345 [Quercus suber])

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-08
Identity = 62/234 (26.50%), Postives = 95/234 (40.60%), Query Frame = 0

Query: 7    WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
            W E  IR+   P D E IL IP  +    D ++W E S G FSV+SAYR+A+ L   + A
Sbjct: 832  WKEEIIRQIFFPVDMEVILGIPLSTRFPEDRVIWAETSNGGFSVRSAYRVAMGLYQAENA 891

Query: 67   -SCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAMI--SKLDDRNIAQATMILWNLWN 126
             S S   + +S WK                  LW   +     D+  I     + W  W 
Sbjct: 892  VSASSNSQLQSFWK-----------------KLWHLPVPHKSFDEEKIILVVTVAWAFWC 951

Query: 127  YRNKYKHNGNPPN------------LQENQASHPNAAVRENQPRLSNISSPSPNFWRLST 186
             RN+ +H     +            L+ + A+    AVRE      N   P P+  +++ 
Sbjct: 952  NRNEIRHGAEKKSPEAIVQWVNRYLLEYSAATESVPAVREEVSVTWN--PPPPSILKVNV 1011

Query: 187  DASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAKAIMEGLKSEK 226
            D + T   +  G+G  + D  G + A   +++        +E KA   GL+  K
Sbjct: 1012 DGATTKNLNFVGVGAVVRDEQGRVVAAMSRKIPAPLGPLEVEVKAFEAGLQLAK 1046

BLAST of Spg006507 vs. NCBI nr
Match: EEC68887.1 (hypothetical protein OsI_37529 [Oryza sativa Indica Group])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-07
Identity = 65/247 (26.32%), Postives = 101/247 (40.89%), Query Frame = 0

Query: 7    WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
            WD  +I +     D E ILNI   S S  D I W  D  G+FSV+SAYRLA  L + + +
Sbjct: 1427 WDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEES 1486

Query: 67   SCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAMISKLDDRNIAQATMILWNLWNYRN 126
            S S        W+ + K +    + +   I  W    + L    +A   M LW  W  RN
Sbjct: 1487 SSSGTNNINKAWEMIWKCK----VPQKVKIFAWRVASNCL--ATMAMFLMTLWRNWYVRN 1546

Query: 127  KYKHNGNPPNLQENQ-------------ASHPNAAVRENQPRLSNI-------------- 186
            +  H  + P  + +Q                P A + + +  +  +              
Sbjct: 1547 ELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNH 1606

Query: 187  ----SSPSPNFWRLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAK 223
                  P   + +L+ D S+  ++ +GGLG  L +S G +    CK + R  +    E +
Sbjct: 1607 QPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELR 1666

BLAST of Spg006507 vs. ExPASy TrEMBL
Match: A0A2N9FBK3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12465 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 67/260 (25.77%), Postives = 119/260 (45.77%), Query Frame = 0

Query: 7   WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
           W++  I    +P D + I  +P  S  S D+++W  +  G +SV+SAYR+   +++  G 
Sbjct: 499 WNKPLIDRIFNPGDAQLITGLP-LSMRSEDKLMWGHEKSGTYSVRSAYRMLCAVDNSIGP 558

Query: 67  SCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAMISKLDDRNIAQATMILWNLWNYRN 126
           SCSD     +L + +++   +  LD   L +L++    +L    IA+   +LW +WN RN
Sbjct: 559 SCSDMGVPHTLARKLSRRRYSSLLD--VLSDLFKLGTMEL----IAEFCFMLWLIWNRRN 618

Query: 127 K--YKHNGNP----PNL-----QENQASHPNAAVRENQPRLSNISSPSPNFWRLSTDASW 186
           K  Y++  +P    P L      E   +H         P L     PS   ++++ DA+ 
Sbjct: 619 KALYQYEIDPISSIPQLAVRLSSEFLEAHKTETPCSPAPPLPIWKLPSHCAYKINFDATL 678

Query: 187 TDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAKAIMEGLKSEKADNVSFVKCP 246
           + A +R G+G  + D  G   A  CK+    ++I   +A A  E L+      +S  +  
Sbjct: 679 SSAKARTGVGVIIRDGRGLPIAALCKRFQSLYAIDDAKAIAAREALQFAVEIGISEAEVE 738

Query: 247 REKVKEAHNLARASISHGDF 256
            + +       R  +S+  F
Sbjct: 739 GDSLTICSAFQRQDLSYATF 751

BLAST of Spg006507 vs. ExPASy TrEMBL
Match: A0A2N9ENX3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4273 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 67/260 (25.77%), Postives = 119/260 (45.77%), Query Frame = 0

Query: 7    WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
            W++  I    +P D + I  +P  S  S D+++W  +  G +SV+SAYR+   +++  G 
Sbjct: 1409 WNKPLIDRIFNPGDAQLITGLP-LSMRSEDKLMWGHEKSGTYSVRSAYRMLCAVDNSIGP 1468

Query: 67   SCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAMISKLDDRNIAQATMILWNLWNYRN 126
            SCSD     +L + +++   +  LD   L +L++    +L    IA+   +LW +WN RN
Sbjct: 1469 SCSDMGVPHTLARKLSRRRYSSLLD--VLSDLFKLGTMEL----IAEFCFMLWLIWNRRN 1528

Query: 127  K--YKHNGNP----PNL-----QENQASHPNAAVRENQPRLSNISSPSPNFWRLSTDASW 186
            K  Y++  +P    P L      E   +H         P L     PS   ++++ DA+ 
Sbjct: 1529 KALYQYEIDPISSIPQLAVRLSSEFLEAHKTETPCSPAPPLPIWKLPSHCAYKINFDATL 1588

Query: 187  TDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAKAIMEGLKSEKADNVSFVKCP 246
            + A +R G+G  + D  G   A  CK+    ++I   +A A  E L+      +S  +  
Sbjct: 1589 SSAKARTGVGVIIRDGRGLPIAALCKRFQSLYAIDDAKAIAAREALQFAVEIGISEAEVE 1648

Query: 247  REKVKEAHNLARASISHGDF 256
             + +       R  +S+  F
Sbjct: 1649 GDSLTICSAFQRQDLSYATF 1661

BLAST of Spg006507 vs. ExPASy TrEMBL
Match: A0A7N2L5N1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-08
Identity = 46/176 (26.14%), Postives = 76/176 (43.18%), Query Frame = 0

Query: 2   DSERGWDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLE 61
           +  R WD  +I    +   R +IL  P  +  + D ++W E+    FSVK+AY +AL L+
Sbjct: 339 EDTRQWDRGKIHALFTARTRTEILAFPLNNLQARDSLIWMENKARTFSVKTAYHVALRLK 398

Query: 62  SCKGASCSDELKDKSLWKSV-------NKEESTGHL-----------------------D 121
             +    S    DKS WK +        K E+TGH+                       +
Sbjct: 399 QQQVVEHSKARSDKSTWKKIWTLNVPPKKPETTGHILWECPLARNVWALVKGKIQKCNNE 458

Query: 122 RGELINLWEAMISKLDDRNIAQATMILWNLWNYRNKYKHNGNPPNLQENQASHPNA 148
             +   L+  M+  LD R++ +   + W++WN RNK+          E++ +HP A
Sbjct: 459 ARDFFLLFGFMVQSLDQRDLERWATVAWSIWNARNKFYF--------EHKQTHPRA 506

BLAST of Spg006507 vs. ExPASy TrEMBL
Match: B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-08
Identity = 65/247 (26.32%), Postives = 101/247 (40.89%), Query Frame = 0

Query: 7    WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLALNLESCKGA 66
            WD  +I +     D E ILNI   S S  D I W  D  G+FSV+SAYRLA  L + + +
Sbjct: 1427 WDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEES 1486

Query: 67   SCSDELKDKSLWKSVNKEESTGHLDRGELINLWEAMISKLDDRNIAQATMILWNLWNYRN 126
            S S        W+ + K +    + +   I  W    + L    +A   M LW  W  RN
Sbjct: 1487 SSSGTNNINKAWEMIWKCK----VPQKVKIFAWRVASNCL--ATMAMFLMTLWRNWYVRN 1546

Query: 127  KYKHNGNPPNLQENQ-------------ASHPNAAVRENQPRLSNI-------------- 186
            +  H  + P  + +Q                P A + + +  +  +              
Sbjct: 1547 ELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNH 1606

Query: 187  ----SSPSPNFWRLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCLEAK 223
                  P   + +L+ D S+  ++ +GGLG  L +S G +    CK + R  +    E +
Sbjct: 1607 QPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELR 1666

BLAST of Spg006507 vs. ExPASy TrEMBL
Match: A0A2K2DNF3 (RNase H domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g38111v3 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 67/257 (26.07%), Postives = 106/257 (41.25%), Query Frame = 0

Query: 7   WDERRIREAVSPCDREDILNIPRCSPSSNDEILWDEDSKGVFSVKSAYRLAL------NL 66
           WDE  +R  +   D E +L IP     S+D I W  DSKG FSVKSAY++ L        
Sbjct: 50  WDEVLVRGILPAADAEIVLKIP-IFEESDDFIAWHYDSKGSFSVKSAYKVHLYSSLRNER 109

Query: 67  ESCKG-------ASCSDELKD-----------KSLWKSVNKEESTGHLDRGELINLWEAM 126
             C G       A C    ++           K+ W+++  EE+   L           +
Sbjct: 110 AECSGVELDTRCAVCRKYFENGNHLFFSCPEVKNRWRALELEEARLQLCACPSAMEVGRV 169

Query: 127 ISKLDDRNIAQATMILWNLWNYRNKYKHNGNPPNLQENQASHPN-------AAVRENQPR 186
           I++L           LW  WN RNK        ++ E Q    +       A  +E+   
Sbjct: 170 ITQLQKDKAIPIVAFLWCWWNERNKANKGEVFCSVDEFQFKVRHFAQVWSAAFFKEHSTG 229

Query: 187 LSNISS---PSPNFWRLSTDASWTDAASRGGLGWSLHDSNGSLYAIGCKQVIRKWSIKCL 230
           + ++SS   P  +F +++ D ++   + RGG GW   D  G +       ++R       
Sbjct: 230 VHHVSSWQRPPEDFIKINIDGAFHANSGRGGWGWIARDGEGDIIFAASGAIVRASEALQT 289

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024034843.11.1e-1224.48uncharacterized protein LOC112096145 [Citrus clementina][more]
XP_031116510.17.4e-0926.32uncharacterized protein LOC116020169 [Ipomoea triloba][more]
XP_031120971.12.2e-0827.71uncharacterized protein LOC116024211 [Ipomoea triloba][more]
XP_023897447.12.2e-0826.50uncharacterized protein LOC112009345 [Quercus suber][more]
EEC68887.11.1e-0726.32hypothetical protein OsI_37529 [Oryza sativa Indica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9FBK32.1e-0925.77Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9ENX32.1e-0925.77Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A7N2L5N13.0e-0826.14Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
B8BN965.2e-0826.32Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
A0A2K2DNF31.5e-0726.07RNase H domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 171..222
e-value: 5.1E-5
score: 23.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg006507.1Spg006507.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity