Spg006277 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006277
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PH domain-containing protein
Location	scaffold4: 4356402 .. 4357164 (+)
RNA-Seq Expression	Spg006277
Synteny	Spg006277

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCAAAGGTCTTCAAGGAAAGGATATGTTGCTCTTGGTTGTGTTGTGTCCAAGGGAATTATGCATCTGCCATTGTCTGTTGTTTTCTGTATTGCCAAGTCCTTAGTTTGTGTTTGCTCCCTGAGGGACTACATAAATATCAGCTCCAGTGTTCCGTGCCATTCAGATTTTGCTTTATGGTGTGGGGTCAATGTTGCAGGATCTTTCTTGCCTGTAGTTCCAAGAACTTTTAGTGTGAGTGGTACTGCATATGATCTGCATATGAACTTTTATTTTGGTGATTTTGTTGTTAAAGGATTTGAGCGTCCGAAGGGTTGTTCATGTCTCTGCTAGTTCTCCAATTTGTGGGACAAATCAATGTAAAAAGGTATGGAAGCTATATTTTTCTGGTTGCCAAAAGCTCCTCCAGGGTTTGTTTTCTTGGGTTGTATTGCCTGCATAGGTATGCCGAAGCATCAAGTCTCAAGTGCATTGGGATGCATGCGGATGGATATGGTATCATGGGATCAGTTTTTGGAGGAAAATGTTTGGGTTTCTTCAGATGCCAGGTTAATATCAGAGTCATTCAGCATTTGGGTAGTTGGTAATGAGTTAGGGTCCTTCATTGTGCGTATAGCACCGTTACTGATGCAGAAGTGAGATCATTTTCGATAGCAGTTTTTTGATGTCTTTGCTGGTTTTGGAATCAAAAGATAACCTCATATTATATGCCCGGCTCATGGCTTCGTCTTGGTGTTCTTTGCCCAAGCTATTCTCATGA

mRNA sequence

ATGGTCCAAAGGTCTTCAAGGAAAGGATATGTTGCTCTTGGTTGTGTTGTGTCCAAGGGAATTATGCATCTGCCATTGTCTGTTGTTTTCTGTATTGCCAAGTCCTTAGTTTGTGTTTGCTCCCTGAGGGACTACATAAATATCAGCTCCAGTGTTCCGTGCCATTCAGATTTTGCTTTATGGTGTGGGGTCAATGTTGCAGGATCTTTCTTGCCTGTAGTTCCAAGAACTTTTAGTGTGAGTGGTACTGCATATGATCTGCATATGAACTTTTATTTTGGTGATTTTGTTGTTAAAGGATTTGAGCGTCCGAAGGGTTGTTCATGTATGCCGAAGCATCAAGTCTCAAGTGCATTGGGATGCATGCGGATGGATATGGTATCATGGGATCAGTTTTTGGAGGAAAATGTTTGGGTTTCTTCAGATGCCAGAAGTGAGATCATTTTCGATAGCAGTTTTTTGATGTCTTTGCTGGTTTTGGAATCAAAAGATAACCTCATATTATATGCCCGGCTCATGGCTTCGTCTTGGTGTTCTTTGCCCAAGCTATTCTCATGA

Coding sequence (CDS)

ATGGTCCAAAGGTCTTCAAGGAAAGGATATGTTGCTCTTGGTTGTGTTGTGTCCAAGGGAATTATGCATCTGCCATTGTCTGTTGTTTTCTGTATTGCCAAGTCCTTAGTTTGTGTTTGCTCCCTGAGGGACTACATAAATATCAGCTCCAGTGTTCCGTGCCATTCAGATTTTGCTTTATGGTGTGGGGTCAATGTTGCAGGATCTTTCTTGCCTGTAGTTCCAAGAACTTTTAGTGTGAGTGGTACTGCATATGATCTGCATATGAACTTTTATTTTGGTGATTTTGTTGTTAAAGGATTTGAGCGTCCGAAGGGTTGTTCATGTATGCCGAAGCATCAAGTCTCAAGTGCATTGGGATGCATGCGGATGGATATGGTATCATGGGATCAGTTTTTGGAGGAAAATGTTTGGGTTTCTTCAGATGCCAGAAGTGAGATCATTTTCGATAGCAGTTTTTTGATGTCTTTGCTGGTTTTGGAATCAAAAGATAACCTCATATTATATGCCCGGCTCATGGCTTCGTCTTGGTGTTCTTTGCCCAAGCTATTCTCATGA

Protein sequence

MVQRSSRKGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVAGSFLPVVPRTFSVSGTAYDLHMNFYFGDFVVKGFERPKGCSCMPKHQVSSALGCMRMDMVSWDQFLEENVWVSSDARSEIIFDSSFLMSLLVLESKDNLILYARLMASSWCSLPKLFS

Homology

[Close]

BLAST of Spg006277 vs. NCBI nr
Match: KAG6571775.1 (putative vacuolar protein sorting-associated protein 13A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-29
Identity = 96/262 (36.64%), Postives = 104/262 (39.69%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVSKGI   PLS VFCIA SLV  CSLRD I+IS+SVPC S+ ALW   N A
Sbjct: 1938 KGYVALGCVVSKGITKPPLSAVFCIATSLVSGCSLRDCISISTSVPCRSNIALWRVDNAA 1997

Query: 68   GSFLPVVPRTFSVSGTAYDLHM-------------------------------------- 127
            GSFLP  P TFSV GTAY+L                                        
Sbjct: 1998 GSFLPADPTTFSVRGTAYELRRTIFGFPEVYHQMSKSSDSHASPSQTETSLPEKSRIVTS 2057

Query: 128  -----------------------------------NFYFGDFVVKGFERPK--------- 145
                                                 YFGD V+KGFERP          
Sbjct: 2058 GQHFEAVADFQLIWWNRGSNSKKKLSIWRPVVPQGKIYFGDVVMKGFERPNTSIILNHTG 2117

[Close]

BLAST of Spg006277 vs. NCBI nr
Match: XP_038888106.1 (uncharacterized protein LOC120078006 isoform X2 [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 8.9e-29
Identity = 92/262 (35.11%), Postives = 105/262 (40.08%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVS GIM  PLS V+CIA SLV  CS RD I+IS+SVPCHS+FALW   N A
Sbjct: 2096 KGYVALGCVVSNGIMQPPLSAVYCIASSLVSACSFRDCISISTSVPCHSNFALWRVDNAA 2155

Query: 68   GSFLPVVPRTFSVSGTAYDLHMN------------------------------------- 127
            GSFLP  P +F V GTAY+L  +                                     
Sbjct: 2156 GSFLPADPTSFGVRGTAYELRRSIFGFPEVYHEIPKSSDSHASPSQTETLHLEKSPIVTS 2215

Query: 128  ------------------------------------FYFGDFVVKGFERPK--------- 145
                                                 YFGD V+KGFE P          
Sbjct: 2216 GQRFEAVGKFQLIWWNKGSNSKKKLSIWRPVVPQGKIYFGDVVIKGFEPPNTSIILLHTG 2275

[Close]

BLAST of Spg006277 vs. NCBI nr
Match: XP_038888105.1 (uncharacterized protein LOC120078006 isoform X1 [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 8.9e-29
Identity = 92/262 (35.11%), Postives = 105/262 (40.08%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVS GIM  PLS V+CIA SLV  CS RD I+IS+SVPCHS+FALW   N A
Sbjct: 2096 KGYVALGCVVSNGIMQPPLSAVYCIASSLVSACSFRDCISISTSVPCHSNFALWRVDNAA 2155

Query: 68   GSFLPVVPRTFSVSGTAYDLHMN------------------------------------- 127
            GSFLP  P +F V GTAY+L  +                                     
Sbjct: 2156 GSFLPADPTSFGVRGTAYELRRSIFGFPEVYHEIPKSSDSHASPSQTETLHLEKSPIVTS 2215

Query: 128  ------------------------------------FYFGDFVVKGFERPK--------- 145
                                                 YFGD V+KGFE P          
Sbjct: 2216 GQRFEAVGKFQLIWWNKGSNSKKKLSIWRPVVPQGKIYFGDVVIKGFEPPNTSIILLHTG 2275

[Close]

BLAST of Spg006277 vs. NCBI nr
Match: KAE8651464.1 (hypothetical protein Csa_002584 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-28
Identity = 96/262 (36.64%), Postives = 105/262 (40.08%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVSKGI   P+S VFCIA SLV  CSLRD I+IS+SVPCHSDFALW   N A
Sbjct: 2097 KGYVALGCVVSKGITQPPVSAVFCIASSLVSACSLRDCISISTSVPCHSDFALWRVDNAA 2156

Query: 68   GSFLPVVPRTFSVSGTAYDLH--------------------------------------- 127
            GSFLP  P TFSV GTAY+L                                        
Sbjct: 2157 GSFLPADPTTFSVRGTAYELRHTIFGFPEVSHEVPKSSDSHASPSQTETSHLEKSPIVTS 2216

Query: 128  -------MNF---------------------------YFGDFVVKGFERPK--------- 145
                    NF                           YFGD  +KGFE P          
Sbjct: 2217 GQRFEAVANFQLIWWNRGSNSKKKLSIWRPVVPQGKIYFGDVAIKGFEPPNTSIVLHHTG 2276

[Close]

BLAST of Spg006277 vs. NCBI nr
Match: KAA0038522.1 (hypothetical protein E6C27_scaffold92G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-27
Identity = 93/262 (35.50%), Postives = 104/262 (39.69%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVS G    P+S VFCIA SLV  CSLRD I+IS+SVPCHSDFALW   N A
Sbjct: 1480 KGYVALGCVVSNGNTQPPVSAVFCIASSLVSACSLRDCISISTSVPCHSDFALWRVDNAA 1539

Query: 68   GSFLPVVPRTFSVSGTAYDL------------------------------HM-------- 127
            GSFLP  P TFSV GTAY+L                              H+        
Sbjct: 1540 GSFLPADPTTFSVRGTAYELRRTIFGFPDVYHEVTKSSDSHALPGQTETSHLEKSPIVTS 1599

Query: 128  -----------------------------------NFYFGDFVVKGFERPK--------- 145
                                                 +FGD  +KGFERP          
Sbjct: 1600 GQRFEAVADFQLIWWNRGSNSKKKLSIWRPVVPQGKIFFGDVAIKGFERPSTSIVLHHTG 1659

[Close]

BLAST of Spg006277 vs. ExPASy TrEMBL
Match: A0A0A0LEI9 (PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G912290 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.6e-29
Identity = 96/262 (36.64%), Postives = 105/262 (40.08%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVSKGI   P+S VFCIA SLV  CSLRD I+IS+SVPCHSDFALW   N A
Sbjct: 1689 KGYVALGCVVSKGITQPPVSAVFCIASSLVSACSLRDCISISTSVPCHSDFALWRVDNAA 1748

Query: 68   GSFLPVVPRTFSVSGTAYDLH--------------------------------------- 127
            GSFLP  P TFSV GTAY+L                                        
Sbjct: 1749 GSFLPADPTTFSVRGTAYELRHTIFGFPEVSHEVPKSSDSHASPSQTETSHLEKSPIVTS 1808

Query: 128  -------MNF---------------------------YFGDFVVKGFERPK--------- 145
                    NF                           YFGD  +KGFE P          
Sbjct: 1809 GQRFEAVANFQLIWWNRGSNSKKKLSIWRPVVPQGKIYFGDVAIKGFEPPNTSIVLHHTG 1868

[Close]

BLAST of Spg006277 vs. ExPASy TrEMBL
Match: A0A5A7T4X4 (PH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00460 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 93/262 (35.50%), Postives = 104/262 (39.69%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVS G    P+S VFCIA SLV  CSLRD I+IS+SVPCHSDFALW   N A
Sbjct: 1480 KGYVALGCVVSNGNTQPPVSAVFCIASSLVSACSLRDCISISTSVPCHSDFALWRVDNAA 1539

Query: 68   GSFLPVVPRTFSVSGTAYDL------------------------------HM-------- 127
            GSFLP  P TFSV GTAY+L                              H+        
Sbjct: 1540 GSFLPADPTTFSVRGTAYELRRTIFGFPDVYHEVTKSSDSHALPGQTETSHLEKSPIVTS 1599

Query: 128  -----------------------------------NFYFGDFVVKGFERPK--------- 145
                                                 +FGD  +KGFERP          
Sbjct: 1600 GQRFEAVADFQLIWWNRGSNSKKKLSIWRPVVPQGKIFFGDVAIKGFERPSTSIVLHHTG 1659

[Close]

BLAST of Spg006277 vs. ExPASy TrEMBL
Match: A0A1S3CQB7 (uncharacterized protein LOC103503494 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503494 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 93/262 (35.50%), Postives = 104/262 (39.69%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVALGCVVS G    P+S VFCIA SLV  CSLRD I+IS+SVPCHSDFALW   N A
Sbjct: 2092 KGYVALGCVVSNGNTQPPVSAVFCIASSLVSACSLRDCISISTSVPCHSDFALWRVDNAA 2151

Query: 68   GSFLPVVPRTFSVSGTAYDL------------------------------HM-------- 127
            GSFLP  P TFSV GTAY+L                              H+        
Sbjct: 2152 GSFLPADPTTFSVRGTAYELRRTIFGFPDVYHEVTKSSDSHALPGQTETSHLEKSPIVTS 2211

Query: 128  -----------------------------------NFYFGDFVVKGFERPK--------- 145
                                                 +FGD  +KGFERP          
Sbjct: 2212 GQRFEAVADFQLIWWNRGSNSKKKLSIWRPVVPQGKIFFGDVAIKGFERPSTSIVLHHTG 2271

[Close]

BLAST of Spg006277 vs. ExPASy TrEMBL
Match: A0A6J1DYN3 (uncharacterized protein LOC111024248 OS=Momordica charantia OX=3673 GN=LOC111024248 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 96/264 (36.36%), Postives = 103/264 (39.02%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVP--CHSDFALWCGVN 67
            KGYVALGCVVS GI+  PLS VFCIA SLV  CSLRD I+IS+SVP  CHS FALW   N
Sbjct: 2096 KGYVALGCVVSNGIVEPPLSAVFCIATSLVSTCSLRDCISISTSVPCRCHSSFALWRVDN 2155

Query: 68   VAGSFLPVVPRTFSVSGTAYDLH------------------------------------- 127
             AGSFLP  P  F V GTAY+L                                      
Sbjct: 2156 AAGSFLPADPINFHVRGTAYELRRTIFGFPEVYHEKPKRSDSHASSSQTETSHLERPPIV 2215

Query: 128  ---------MNF---------------------------YFGDFVVKGFERPK------- 145
                      NF                           YFGD VVKGFE P        
Sbjct: 2216 TSGQHFEAVANFQLIWWNRGSNSKKKLSIWRPVVPPEKIYFGDIVVKGFEPPNTSIVLHN 2275

[Close]

BLAST of Spg006277 vs. ExPASy TrEMBL
Match: A0A1S3CPY5 (uncharacterized protein LOC103503494 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503494 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 58/87 (66.67%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVP--CHSDFALWCGVN 67
            KGYVALGCVVS G    P+S VFCIA SLV  CSLRD I+IS+SVP  CHSDFALW   N
Sbjct: 2092 KGYVALGCVVSNGNTQPPVSAVFCIASSLVSACSLRDCISISTSVPCRCHSDFALWRVDN 2151

Query: 68   VAGSFLPVVPRTFSVSGTAYDLHMNFY 93
             AGSFLP  P TFSV GTAY+L    +
Sbjct: 2152 AAGSFLPADPTTFSVRGTAYELRRTIF 2178

[Close]

BLAST of Spg006277 vs. TAIR 10
Match: AT4G17140.1 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 42/91 (46.15%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVAL CVVS G     L+  FCI  S V  CSLRD + ISS+    S  A W   N  
Sbjct: 2066 KGYVALSCVVSSGSTPPSLASTFCILASSVSPCSLRDCVAISSTDISQSSLAFWRVDNSV 2125

Query: 68   GSFLPVVPRTFSVSGTAYDLHMNFYFGDFVV 99
            GSFLP  P T ++ G  Y+L  +  FG   V
Sbjct: 2126 GSFLPADPSTLNLLGRPYELR-HILFGSTAV 2155

[Close]

BLAST of Spg006277 vs. TAIR 10
Match: AT4G17140.2 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 42/91 (46.15%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVAL CVVS G     L+  FCI  S V  CSLRD + ISS+    S  A W   N  
Sbjct: 2056 KGYVALSCVVSSGSTPPSLASTFCILASSVSPCSLRDCVAISSTDISQSSLAFWRVDNSV 2115

Query: 68   GSFLPVVPRTFSVSGTAYDLHMNFYFGDFVV 99
            GSFLP  P T ++ G  Y+L  +  FG   V
Sbjct: 2116 GSFLPADPSTLNLLGRPYELR-HILFGSTAV 2145

[Close]

BLAST of Spg006277 vs. TAIR 10
Match: AT4G17140.3 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 42/91 (46.15%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8    KGYVALGCVVSKGIMHLPLSVVFCIAKSLVCVCSLRDYINISSSVPCHSDFALWCGVNVA 67
            KGYVAL CVVS G     L+  FCI  S V  CSLRD + ISS+    S  A W   N  
Sbjct: 2092 KGYVALSCVVSSGSTPPSLASTFCILASSVSPCSLRDCVAISSTDISQSSLAFWRVDNSV 2151

Query: 68   GSFLPVVPRTFSVSGTAYDLHMNFYFGDFVV 99
            GSFLP  P T ++ G  Y+L  +  FG   V
Sbjct: 2152 GSFLPADPSTLNLLGRPYELR-HILFGSTAV 2181

The following BLAST results are available for this feature:

BLAST of Spg006277 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571775.1	5.2e-29	36.64	putative vacuolar protein sorting-associated protein 13A, partial [Cucurbita arg...	[more]
XP_038888106.1	8.9e-29	35.11	uncharacterized protein LOC120078006 isoform X2 [Benincasa hispida]	[more]
XP_038888105.1	8.9e-29	35.11	uncharacterized protein LOC120078006 isoform X1 [Benincasa hispida]	[more]
KAE8651464.1	1.2e-28	36.64	hypothetical protein Csa_002584 [Cucumis sativus]	[more]
KAA0038522.1	1.7e-27	35.50	hypothetical protein E6C27_scaffold92G00460 [Cucumis melo var. makuwa]	[more]

BLAST of Spg006277 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006277 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEI9	5.6e-29	36.64	PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G912290 PE=4 SV=...	[more]
A0A5A7T4X4	8.1e-28	35.50	PH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3CQB7	8.1e-28	35.50	uncharacterized protein LOC103503494 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DYN3	1.3e-25	36.36	uncharacterized protein LOC111024248 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A1S3CPY5	5.7e-21	66.67	uncharacterized protein LOC103503494 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Spg006277 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17140.1	2.8e-12	46.15	pleckstrin homology (PH) domain-containing protein	[more]
AT4G17140.2	2.8e-12	46.15	pleckstrin homology (PH) domain-containing protein	[more]
AT4G17140.3	2.8e-12	46.15	pleckstrin homology (PH) domain-containing protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006277.1	Spg006277.1	mRNA