Spg005700 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005700
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold8: 19444254 .. 19453758 (-)
RNA-Seq Expression	Spg005700
Synteny	Spg005700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTGGGTACACTAGGAATGGGTTCTGCAAGGAAGCTTTTTTGTTGTTTCGAGAGATGAGAGAGTTGGGATTTCAGTCAGATCAGTTCACATTGGTTCATCTACTCTCCATTTGTTCAAAAAGTTATAGCTTAGATAAAGGTAAATGTGTGCATCTCTATATTGAGATTACTGGGATTCAGTTTGATCAAATTTTAAGAAATGCTCTGCTGGATATGTATGCCAAGTGCACAGATTTTCTTTCTGCTCAGACAATCTTTGATAGAATGCTTGACAAAAATGTGGTCTAATTTACTTCCATGATTAGTGCATATTCGAAACATGGACTTCCTTCCAATGCTCGTGAGATTTTTGATCAAATTCCTGAGAAGAATGTTATCTCTTGGAATTCAATGATCTCTTGTTATGTCCAAGAAGGTCGATACAAGTACGCATTGCATATTTTTCAATAGATGTGTGAGACGATTATCATACCTGATGAGGCTACTCTAGTTAGTGTTCTTTCTGCATGTAGTCAAATTGGTGATTTAGCCATGGGTGATAAAGCCCATTGTTACATATGCAACAACAATATCATGATAATTGCCACTCTTTTGAATGCCCTCATCGACATGTATGCAAAATGCAGCGCCCTTGAATTGAAACCGCCATGGATTTCTTCTTTGAGTTTACAGATAAGAATTTAATGTCTTGGAATGTCATTATCCAGGCACTTGCATTACATGGCTATGGACTACGTGCACTCAAACTATTCAATATGATGCATACTTTAGGGATTTGGCCTGACAAAATCACATTCACAGGACTGCTATCTGCTTGTAGCCATAGTGGGCTTGTCAACATGGGACGCTGTAGCAACTGGTTGTTTAAAAAAGAAAAAAAAAATGAAATGTATCAGTTTTTTTTAAACCCTCAGAACTCTTGCCCTATCTTTATCCTCTCTCTCGATAGAAAAAAAAAAACCCAGCCATGCCTCCCTTCTCCGCTTACACCATTCGCCCAGCCGCGCCGCTTCGCCGTCGTCACCTAGATCTGCAGCGCTACCTCACCGTCTTCCCATTCTCGGCGCTCTCTCTCTCGCAGTGGGTTTCACGTGGGTCTTCTTCCTCTCTCTTTCACCATTATGTCCTGCACGTCGCACCGCCGCCGCCCAGATCCATCACCCAGTTGCGCTGCTCTGCCGTCGTCACAAGGTTCGCAGCGCCGCTCCTCCATTCTCTCTCCCTCTCTTTCGTCGTCACTTCCTTCACGCCAATGTTGTCGCTCTCTCGCAGGTTCTTCTTCTTCGAGTTTTTGGTGACAGACACGATAGACATCAGCTTTCTCCTTAAATTTTGACGATCTAGCAGTGTGAAGCTTCAGTTTTCAAGATCGGTGAGTTTTAGACAATTACAACAAGGTAAGCAAAGGTTCATGAAATTTTTTTTGGATGGATTATAATGTTCATTCGAATACCCATTAAAATTTGATTCCTAATCTAAGGTACCCATAGCGTTTGGAGGCTGAATCTTTAAATTGGTGCAATATTAGAACTCGAGTAGCAAGTCGGCTTCGTTTGAGTTAGTTATTACCTATTTAAATCAAGTTGGTTTTGAGCAAAATTATGGAAATTGGATTCTCCTAATTGTTGGAACTTAATGTGTGAATTTAGATCGACTAACTTGTGGTTGTGAGCGGTGCCACATCGAGCTAATTGGATTTGCACAAGTCAAGAATCAGTTACACCAAAGTAAGCAACCTTACTACTTGGAAAGCCTTGACTAGGCTAGGCTACTTATTATGAATTGTTACATGCTTTAAATGTTATAAAATAGGAGACACTGATTATGTATGGTTGGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAATTGTAACATTTGACCGAACATTAATAAAATGATTTATATTGTTTGTATTAAGTAAATCTTGTCTTATTAACCCTAATCCAATAAACTAAACATCCTAGGCTGTTAGTATGAGGCTTGAACTAGTATGTAGGGACATACGGGGATCAATGTTCAAGTTACAACCTAAAGGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCTTGGTGACACTATGGATACGACATGCTTTGTATTATGATACAAACGCAATGATCCAACGCATTCGTGTAGTGGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAGACCGGACCGCGAGATAGTTAACAACTAGCTCTAACACCGTTAGCTAGTTAGGTTTCTATCTCACTAGGATGACCTAGGCAACTCGGTCTCAATCCTAAGTGGATTATGGACTCCTGTTCACGGGGGTTGTCCTTTGATTTGTATGGGTGAGAGTGGCCAGCACGCAGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGAAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTAAGTAGAGGTATGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTCTATGGCACGAGAGGGACTTCTTTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGGGACTTATGGACAAAGATGTAACCCAAGGGTAAAACAGTAATTTGACCCAGCTTGGGTACGAACACACGTGAAGGACTGACTTGCCGTTATTGGTCGATATCCGTGGACACAGAAATATTCTGTAGTGAGAAGAGTGTAGCTGTGGGTATTTAGTGGAGTGACCCACAGTTAACGAAAGTTGACTAACTTGGTTAATGAGTTTAGCCGATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGAGACTTGAAGCAATTAAGTATAAATTGTAAATTGAAAGTGTTCAATTTATTTAAGGGAATCCTATGATGTATGTTGATACATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTTCAAAAATTAATTCTTGAGAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGATTTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGATATTGTTCAGATAATAGATTTGAACTTATTCATAGACCGTTTCCTATTAAAAAAAGGTACTGGCCATTACCTATATATAGGACCCCTAGGGTGGGGTGAAAGGCATCCCATTGACTCTTCTTCTCTCAAAGATCTCTCCCAAAAAGACTCACACCAGTCTCCTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTACGTTTTCGATCTTATTAGCAAGAAAAGGCGAATCGATCAAAGCTTTCTACAAAAGTAAGTTTTCTATGAAATCCTTGATCACTATGATCGTCTAGATTAGATCTACTTGGTTTTTAGCATGTTTATAGCCGCTGTACAACCCCTTAAATATAGGTTTATTACTGTATTCTTTTGCAAATTGTATTGGTATTTCAATTAAAATCAATGACAAAGAGTAGGTTCGGTAATTCTTTCTGCTGCATAGGGTTTTTATCCCTTCAATTGGTATCAGAGCCAACTCTGTTGTTCTTGATTTTTAATTGAAATTTGTAATTTGTTTATGGTGGGATTTATGCATTATGAATGTTATGGTTTGAAGGTGTACATATTACACATGCGGAAGCAATTGAAGATCGAAAGCACTTAAGACATTCAATTTTACTCCTAAAGCATGAATGTTCTAGAAAAGACAGAATAGAGAGTTTAGAAAACACCAACCTTTGTAGCTCACTTATGTTGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATACTCCGGGCCAAGAACGACTTGTGGGAGTCTATATAAGATAGGGAATGGGAAGGGAATGCTTGAAGCATCAAGCAATGGAGAAGAATGAGAGATGAGAGAACTTTGAGTCCAAATTCCAGCAGCATAACATTAAGGAAAATGGCTCTCATCACTTTGAATTTGATTCAAGCTCCTTTTAAAGACATTCTCCATGCAAAGCCAAGCCTCAAGACACAAGACACATGGTGTATTTGCAAGTTCAAGTGGATTCTAGGTGTACATCTCACAAGACATGCAACAATGCATGAGTGAGTTGTCTTTCCACTTTGAATGTTCATGCATAAGTGGATTTCCAACTAAATCTACCAAATACAAATTGAAATCTAATTTCAAGCTTGCAATTTAATGTTTATTTCAATTCCAAATTGAATTTAACATTAGGTAATTGATTTTGAGGCATTACAAAATGATTTCTTATGATTAATCCAATTAATCATTCTAATATTGTGCAATAAATCATATATGATTCCTAATACATATATATGGTATTCAAAACACTTTTAAATACTCCATCTCTCATTTTCTAATTTAATTCATAATTAAATTATTGTGTCAAACACAATTTACGATAATATCCTTTTTCCCGATTTTTGAACGATTCAAAGCTTCCTATCTTTTGTTCTAGGCTTAATTCCGATATGAGCTAGTAGGGGGACCTAATGGACCTATAGATCATGGGCTCCAACGATTTGAGGCTAACCGACTAATCTCATTATCCAAGCTAGCCAACATTCGTTAACTACCGGGGCACTCCACTATAGCCCGATAGTTGCACTCCCCTCACTATAGATATATTTCTGTCCACTTGATTTAACCATGATTAGTAAGTCGATCCTTCACAGGTTGTTCGTAGCTATAGCTAGGTCAATAAGCCGTTTTACCCCTATAGTACTTCTAGTTCCTTAAGTCCCACTGATCCTCTAATGAACAATTGGTTTATGGTCCAACCAATAAACCGAGTCCCTCTCGGGCCAATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAGCTATCTACCCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGTCGGCGATACTGAGCCACTCTCACCTATGCAGATCTAAGGATAAGCCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCACATGAAATAGTCAATCTCGTCAGTAAACGGTGTTATAAAGCGAGAGTGACTTATTTCTTGGTCCTGGTCTTATGCAAACTCATTGCATAGGACGCCCCCACTCGCATGTCTCTACATGGACGATTTATGATCACATCGTCTATACCATCTATAAAGTGGGCCGCATCTCATAGTGTCCCCAGAATAAGGTACCCAACCCTATTCCTATACTATAGACCGTTTTGGCTATTACTCAAGCTTGATCCACTTTTATGTCTCTACATAAAGCTCAAGAGTTCATCCTATAGCCATGGATCTTAGTTTATTGGATTTGGGTAATTATAAGTGCAATTTACTTTATTCAGTAATAACTTTACTGAATTAGTCTCGATAACACTTTTATCGAATAAGTATATAATTCGTTTATCATTCACTATCTATGAGTTTTAGGACACCTATCCCAACATGGTTTGCGTATAAATGGTTTCGATTAAATTGGCCATAGATTTACTTTTCTTGAATGGTTCAATGTAAAGGCCCTTGCGTTTTTGGGCATAATTTGTAAATCTATTATTCTTTGTAAGTCCGAGTCTAGAATAGGGTGTTTGATGATGAAGATCGATGAAAATCACGTCCAAAATTGAGGCAAAACGCGAAGAACAGCCGCTGGAATGCCCAGATTCTGCCTCTAGACGCAGTAGCGTCGCGACCCTGTTCATCGAGCGTTGCGATGCTGTCACGATTTCGCGAGGCGGGAGTTCTGCGATCGCGTAAGTGTCGCGATGCTATCTTCTCAGCGTCGCGACGCTAACGCGATTTCATGCGACGTGTGGCTAGGGTTTCATGAGGCGGCAAAAGGTAGTTTAGCAGTCCAGTTCGATTGTTGGGGCTGGCTGGGGTCGGTTTGGCCCGATCCAGCTCTGTTCAAGCTCGTTTTGGTAATTTGAAGTCCGGTTCGAAGCGGTTCGGGTCGGTTCGTGCGGTCTAGCCTGGTTCTGAAGCTGCAGAAGGATATTTTTAGGATAAATAGCTTAAATTATTGTAATTTATGTGCTTTATTTTATCCTAGGGGCCAATTAATTGGTTTATACGCTATTTAAATGCTTTATGGATGTCATTTAGATTTAAAATCTCACCTTAGGTTATAAAGCATGCTCATGCATTTTATATATATATTATAATTAGTTATAATGTATGGATTGAAATGCATGATTTATTTTCATGAGTTTTTTAATATATAGTTGAGCTATATTAAAATCAAGAAAAATGGAATAGCATGATGCATGAAATCACTTAGTTAAATATAAAGAGTTATATTTAATAAGTTGTTTGCAACATGCTACTTTGATTTACCTTGATTGGCAATAATATAATTGTTATAATTATTTAATAAGGAAATCAAAGTTGCATTGAGCATGAAACATCCATAGCTTAATATAATTGTTATATTAAATTCATGCAATGAAATCCAATATATATAGTTTTATCATATTAACTTGAATGTGATTTTTAATTATTTTAAAACTATAGTATGCATGATTATAGGGCTAATCATTAAAATTTGAATAGTTTAAAATTAATGATTAGAAACCGTCAACCTATAACAAAGATTGCATGCAAACATAGGATCATAGGTAAATGAATTAATTTTAAAATGTTTAAAATTAATTAGACCTAAGATCACATTAATTCTAATAGGATTAGAATTAAGTCTTGCTTAGTTTTAAAATAGTTTTAATATGACTAAGTAGGACGAACATAACTATTGGTTATAAGGGAATTCTACTGGTGAAATTCTGTCTAAGGCTGGAGGTACTTAAGATGACGGTTTACGAAACACCTGCTACCTGGGAACAGACCTGGAACCTGAGTTGAAATAACCATAGTCATGTTAGCATACAATGTTGCTAGGTATGTTGAAAGAGTTTAATTCACCTAGAACATTACAGTAAAATTCTCTTTATAATAGTTATAATAGGATTAGACTTAGATAAATTGAATTAGCCGGATTTATCTAGGTTAATAAACCCTAAAATATACAGTAGGTCACTTTAGTGGGAGGTAAAATCAAAACTTGATTTAAATCGAGTTTTTACTCCTACGTCCCTATATTCACAACGTGAGATCCATGCTCGACTTCGTATCGTTTTTGCGCGGCCTCCCTTTGAAAAGTGTTTGCATGGGTCAATAACAAGGTGAATGGGGAAAATGCCCCTAGTAAGTGGGAGCGGGACACGTGTCAACATATCCCTCGGTCTCCACCCATAGGTCACACCGTGAGAGTCTTATGATCCGCCTGCGTGTTGTCCTAGAGCAACCATCACATCGGAGGGCCAGATCATAAGATTCGTAACACCGTGAACTCCTGAAAAGGATAGGGCCACTTAGGCTAATTACCAACAGTTGTCTTTCCCTTCGGTAGCCTGTTGGTGCGTGTCTCTGAGATCTGAAAGTGGGAGGGTTACACCTACGAGGATAAGTTAATTTATTAACGAATCCTTGACCGAACGACGGTGGTCAACGTCTATAGGAATATGAGTTATTCTGGTAATAGAGTTGACTGAGAAGTGTCTCATTTTAGAGGAGGAGTAGCTGATCACCCTTCGGTGGCTATTTCTCTAAACCTCTAAAGCATCGTTGCTAAACACAATCAATAGTTTGTTAGGGTTCTTTGATTGATTGTTTGCAAAATTGTTTGGATTTGTGCAATTGATTGTATTGCCTGTTTGATGGGTTAAGGCAAAGATAACTAATACGGTAAATGTTAATTTTTCCAGCAATGTCTTCCTCAATCATCACTTTATTCAAAAATGAAAAATTAACCTGCGAGAACTTTCCTACGTGGAAATCCAACCTTAATAAGATTCTGGTTGTTGAAGATCTCTGGTTCGTCTTAACGGAGGACTGTCCTCCAGTTCCCCCTCGCAATGCATCCCAAGCGATAAAGGATGCGAACGACCGCTGGGCTAAGGCCAATGAAAAGGCCCGCATCTATATCTTGGCTAGCTTAACTGTTTTTTGGCCAAGAAATACAAGAACGTGGTAAATGCAAGGGAAATTATGAATTCCCTACAGGAGATGTTTGGATTACCATCCTACCAACTCCACCATGAGGCTCTATAAAACATCCATAACTCCCACATGGAAGAGGGAAAATCTGTTCGGGAACACGTTTTCGACATGATAAACCAATTCAACATTGCGGAAGCTAATGGCGGGGTTGTCTGTGAGAGAAGTCAGGTTGCGTTTATATTGCACTCACTTCCACAAAGCTTTATGCAGTTTCGAACAAATGCTATCTTGAATAAGATTCAATTCAACCTGACCACCCTTCTAAATGAGCTACAGGTTTATGAGTCCATGCTAAAAAGCAAGGGTAAAAATGTGGTTAAAGGAGAGGCCAATGTGGCCCATTCCAAAAAGTTCCTGAAGGGTTCATCCTTAGGAACTAAACCTGTACCTCAAGCTTCTTCTTCAAAGAAGCTACAGAAAAAGGGTGAAAAGGGGAAGGCTCCTACTAAAGCTGTTTGAGGCAAGGGAAAGGCTGATAGCGAGCATAGCTAGCTATTTTTCTCTGATTAATTAAGCTAGTCTTTTACAATTATTTGCCCAAATTTATGCATTTTTATGTTTTATTTGTAGGAAGTATGTGTTTGAAGCTTAATTCAGCAATTGGAGTCAAATGGAGTCTTCAATCTAAAAAAAAAAAAAAAATCATAGCGTCGCGACGCTATAGGCAAATTTTCCAAAAATGCGGTATCGCGACAGCGTCGCGACGCTGTCGCCAGATTTTCTATAAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTCAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTGCGGTGTCGGCGGATTCGAGTTTTCCTTTCTCTTTCCCTTAACTCTTGTAGTTTTTATGGCTTTTCTTTCAATTAGTGTTTGTGGTTTAAAGACTATGGATTGCTAGTTGTTTGTCTTAGGGTTTGATGTAGTTGCTTAAATTGTTGGATTGAATTTTGGGTATGAATGTGTTCTTATTTTATGCATGCAATTTTATGTGTAATGCTTTCAATTATTTGATCACTAATTGAATGATTGAAGTGTTGAATCTAACTCGGGAGGGAGGATTTGGCCTAAGACTTACTTTGTTTAATTGCATGACTAGAGTAGAAATTCTAAGTTTGTGACGGGATTTGGAATATCTTTAGAAGCGTAA

mRNA sequence

ATGATTGGTGGGTACACTAGGAATGGGTTCTGCAAGGAAGCTTTTTTGTTGTTTCGAGAGATGAGAGAGTTGGGATTTCAGTCAGATCAGTTCACATTGGTTCATCTACTCTCCATTTGTTCAAAAAGTTATAGCTTAGATAAAGGTAAATGTGTGCATCTCTATATTGAGATTACTGGGATTCAGTTTGATCAAATTTTAAGAAATGCTCTGCTGGATATGTATGCCAAGTGCACAGATTTTCTTTCTGCTCAGACAATCTTTGATAGAATGCTTGACAAAAATGTGGCACTTGCATTACATGGCTATGGACTACGTGCACTCAAACTATTCAATATGATGCATACTTTAGGGATTTGGCCTGACAAAATCACATTCACAGGACTGCTATCTGCTTGTAGCCATAGTGGGCTTGTCAACATGGGACGCTGTAGCAACTGCCGCGCCGCTTCGCCGTCGTCACCTAGATCTGCAGCGCTACCTCACCGTCTTCCCATTCTCGGCGCTCTCTCTCTCGCAGTGGGTTTCACGTGGGTCTTCTTCCTCTCTCTTTCACCATTATGTCCTGCACGTCGCACCGCCGCCGCCCAGATCCATCACCCAGTTGCGCTGCTCTGCCGTCGTCACAAGGTTCGCAGCGCCGCTCCTCCATTCTCTCTCCCTCTCTTTCGTCGTCACTTCCTTCACGCCAATGTTGTCGCTCTCTCGCAGTGTGAAGCTTCAGTTTTCAAGATCGATCGACTAACTTGTGGTTGTGAGCGGTGCCACATCGAGCTAATTGGATTTGCACAAGTCAAGAATCAGTTACACCAAAGAGACACTGATTATGTATGGGATAAGGCTGGGTACCTTATCTTGGTGACACTATGGATACGACATGCTTTGTATTATGATACAAACGCAATGATCCAACGCATTCGTGTAGTGGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAGACCGGACCGCGAGATAGTTGTTCATTAGAGGAGCACTGGGGACTTATGGACAAAGATGACGCCCCCACTCGCATGTCTCTACATGGACGATTTATGATCACATCGTCTATACCATCTATAAAGTGGGCCGCATCTCATAGTGTCCCCAGAATAAGGCGGGAGTTCTGCGATCGCGTAAGTGTCGCGATGCTATCTTCTCAGCGTCGCGACGCTAACGCGATTTCATGCGACGTGTGGCTAGGGTTTCATGAGGCGGCAAAAGGTAGTTTAGCAGTCCAGTTCGATTGTTGGGGCTGGCTGGGGTCGGTTTGGCCCGATCCAGCTCTGTTCAAGCTCGTTTTGCGTCGCGACGCTGTCGCCAGATTTTCTATAAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTCAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACAGTAGAAATTCTAAGTTTGTGACGGGATTTGGAATATCTTTAGAAGCGTAA

Coding sequence (CDS)

ATGATTGGTGGGTACACTAGGAATGGGTTCTGCAAGGAAGCTTTTTTGTTGTTTCGAGAGATGAGAGAGTTGGGATTTCAGTCAGATCAGTTCACATTGGTTCATCTACTCTCCATTTGTTCAAAAAGTTATAGCTTAGATAAAGGTAAATGTGTGCATCTCTATATTGAGATTACTGGGATTCAGTTTGATCAAATTTTAAGAAATGCTCTGCTGGATATGTATGCCAAGTGCACAGATTTTCTTTCTGCTCAGACAATCTTTGATAGAATGCTTGACAAAAATGTGGCACTTGCATTACATGGCTATGGACTACGTGCACTCAAACTATTCAATATGATGCATACTTTAGGGATTTGGCCTGACAAAATCACATTCACAGGACTGCTATCTGCTTGTAGCCATAGTGGGCTTGTCAACATGGGACGCTGTAGCAACTGCCGCGCCGCTTCGCCGTCGTCACCTAGATCTGCAGCGCTACCTCACCGTCTTCCCATTCTCGGCGCTCTCTCTCTCGCAGTGGGTTTCACGTGGGTCTTCTTCCTCTCTCTTTCACCATTATGTCCTGCACGTCGCACCGCCGCCGCCCAGATCCATCACCCAGTTGCGCTGCTCTGCCGTCGTCACAAGGTTCGCAGCGCCGCTCCTCCATTCTCTCTCCCTCTCTTTCGTCGTCACTTCCTTCACGCCAATGTTGTCGCTCTCTCGCAGTGTGAAGCTTCAGTTTTCAAGATCGATCGACTAACTTGTGGTTGTGAGCGGTGCCACATCGAGCTAATTGGATTTGCACAAGTCAAGAATCAGTTACACCAAAGAGACACTGATTATGTATGGGATAAGGCTGGGTACCTTATCTTGGTGACACTATGGATACGACATGCTTTGTATTATGATACAAACGCAATGATCCAACGCATTCGTGTAGTGGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAGACCGGACCGCGAGATAGTTGTTCATTAGAGGAGCACTGGGGACTTATGGACAAAGATGACGCCCCCACTCGCATGTCTCTACATGGACGATTTATGATCACATCGTCTATACCATCTATAAAGTGGGCCGCATCTCATAGTGTCCCCAGAATAAGGCGGGAGTTCTGCGATCGCGTAAGTGTCGCGATGCTATCTTCTCAGCGTCGCGACGCTAACGCGATTTCATGCGACGTGTGGCTAGGGTTTCATGAGGCGGCAAAAGGTAGTTTAGCAGTCCAGTTCGATTGTTGGGGCTGGCTGGGGTCGGTTTGGCCCGATCCAGCTCTGTTCAAGCTCGTTTTGCGTCGCGACGCTGTCGCCAGATTTTCTATAAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTCAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACAGTAGAAATTCTAAGTTTGTGACGGGATTTGGAATATCTTTAGAAGCGTAA

Protein sequence

MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITGIQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNVALALHGYGLRALKLFNMMHTLGIWPDKITFTGLLSACSHSGLVNMGRCSNCRAASPSSPRSAALPHRLPILGALSLAVGFTWVFFLSLSPLCPARRTAAAQIHHPVALLCRRHKVRSAAPPFSLPLFRRHFLHANVVALSQCEASVFKIDRLTCGCERCHIELIGFAQVKNQLHQRDTDYVWDKAGYLILVTLWIRHALYYDTNAMIQRIRVVDMRVGVSCAMSLHKTGPRDSCSLEEHWGLMDKDDAPTRMSLHGRFMITSSIPSIKWAASHSVPRIRREFCDRVSVAMLSSQRRDANAISCDVWLGFHEAAKGSLAVQFDCWGWLGSVWPDPALFKLVLRRDAVARFSINSSFHATAKGSPIGQILALISTRDLLWELKARPRSGNQARRRGDRDGDSRNSKFVTGFGISLEA

Homology

[Close]

BLAST of Spg005700 vs. NCBI nr
Match: KAG6571425.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-47
Identity = 121/283 (42.76%), Postives = 133/283 (47.00%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +IGGY+RNGFCKEAFLLFR+MR  GFQ D FTLVHL SIC++SY+LD GKCVHLY+EITG
Sbjct: 204 IIGGYSRNGFCKEAFLLFRDMRVWGFQPDLFTLVHLFSICTRSYNLDMGKCVHLYVEITG 263

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+FDQILRNALLDMYAKC D LSA+TIFDRM+DKNV                        
Sbjct: 264 IEFDQILRNALLDMYAKCGDLLSARTIFDRMIDKNVVSHTSMISAYSKHGLFRYAREVFD 323

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 324 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTIMPDEATLVSVLSACSQIGDLAM 383

[Close]

BLAST of Spg005700 vs. NCBI nr
Match: KAG7011190.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-47
Identity = 121/283 (42.76%), Postives = 133/283 (47.00%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +IGGY+RNGFCKEAFLLFR+MR  GFQ D FTLVHL SIC++SY+LD GKCVHLY+EITG
Sbjct: 204 IIGGYSRNGFCKEAFLLFRDMRVWGFQPDLFTLVHLFSICTRSYNLDMGKCVHLYVEITG 263

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+FDQILRNALLDMYAKC D LSA+TIFDRM+DKNV                        
Sbjct: 264 IEFDQILRNALLDMYAKCGDLLSARTIFDRMIDKNVVSHTSMISAYSKHGLFRYAREVFD 323

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 324 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTIMPDEATLVSVLSACSQIGDLAM 383

[Close]

BLAST of Spg005700 vs. NCBI nr
Match: XP_022928049.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-47
Identity = 121/283 (42.76%), Postives = 133/283 (47.00%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +IGGY+RNGFCKEAFLLFR+MR  GFQ D FTLVHL SIC++SY+LD GKCVHLY+EITG
Sbjct: 212 IIGGYSRNGFCKEAFLLFRDMRVWGFQPDLFTLVHLFSICTRSYNLDMGKCVHLYVEITG 271

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+FDQILRNALLDMYAKC D LSA+TIFDRM+DKNV                        
Sbjct: 272 IEFDQILRNALLDMYAKCGDLLSARTIFDRMIDKNVVSHTSMISAYSKHGLFRYAREVFD 331

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 332 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTIMPDEATLVSVLSACSQIGDLAM 391

[Close]

BLAST of Spg005700 vs. NCBI nr
Match: XP_038900653.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 9.0e-47
Identity = 123/283 (43.46%), Postives = 132/283 (46.64%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           MIGGY+RNG CKEAFLLF+EMRE GFQ DQFTLVHLLSICS+S+SLD GKCVH Y+EITG
Sbjct: 216 MIGGYSRNGLCKEAFLLFQEMRESGFQPDQFTLVHLLSICSRSFSLDIGKCVHHYVEITG 275

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+ DQILRNALLDMYAKC D L A+TIFDRM+DKNV                        
Sbjct: 276 IEVDQILRNALLDMYAKCGDLLFARTIFDRMIDKNVVSRTSMISAYSNHGLLRLAREVFD 335

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 336 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTTMPDEATLVSVLSACSQIGDLAI 395

[Close]

BLAST of Spg005700 vs. NCBI nr
Match: XP_022971672.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 4.5e-46
Identity = 119/283 (42.05%), Postives = 132/283 (46.64%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +IGGY+RNGFCKEAFLLFR+MR  GFQ D FTLVHL SIC++SY+LD GKCVHLY+EITG
Sbjct: 212 IIGGYSRNGFCKEAFLLFRDMRVWGFQPDLFTLVHLFSICTRSYNLDMGKCVHLYVEITG 271

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
            +FDQILRNA+LDMYAKC D LSA+TIFDRM+DKNV                        
Sbjct: 272 TEFDQILRNAMLDMYAKCGDLLSARTIFDRMIDKNVVSHTSMISAYSKHGLFRYAREVFD 331

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 332 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTIMPDEATLVSVLSACSQIGDLAM 391

[Close]

BLAST of Spg005700 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-25
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +I G+  NG  +EA  L+ EM   G + D FT+V LLS C+K  +L  GK VH+Y+   G
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 252

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKN--------VALALHGYGLRALKLFN 120
           +  +    N LLD+YA+C     A+T+FD M+DKN        V LA++G+G  A++LF 
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 312

Query: 121 MMH-TLGIWPDKITFTGLLSACSHSGLVNMG 143
            M  T G+ P +ITF G+L ACSH G+V  G
Sbjct: 313 YMESTEGLLPCEITFVGILYACSHCGMVKEG 343

[Close]

BLAST of Spg005700 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-24
Identity = 60/152 (39.47%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           ++ G+ +NG   EA  +F +MRE GF+ D  T V LLS C+++ ++  G  VH YI   G
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV--------ALALHGYGLRALKLFN 120
           +  +  L  AL+++Y++C D   A+ +FD+M + NV        A   HGYG +A++LFN
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFN 298

Query: 121 MMH-TLGIWPDKITFTGLLSACSHSGLVNMGR 144
            M    G  P+ +TF  +LSAC+H+GLV  GR
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGR 330

[Close]

BLAST of Spg005700 vs. ExPASy Swiss-Prot
Match: Q9LVF9 (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E29 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-24
Identity = 59/150 (39.33%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +I GY +NG+  +A   F  M+  G++ D  T+  +LS C++S  LD G+ VH  I   G
Sbjct: 245 LIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRG 304

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNVA--------LALHGYGLRALKLFN 120
           I+ +Q + NAL+DMYAKC D  +A ++F+ +  ++VA        LA+HG G  AL++F+
Sbjct: 305 IELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFS 364

Query: 121 MMHTLGIWPDKITFTGLLSACSHSGLVNMG 143
            M +L + PD+ITF  +L+AC H G +  G
Sbjct: 365 TMESLDLKPDEITFIAVLTACVHGGFLMEG 394

[Close]

BLAST of Spg005700 vs. ExPASy Swiss-Prot
Match: Q9SS83 (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.5e-24
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           M+ G+++NGF +EA   ++EMR  G   DQ T V +L +CS   SL +G+ +H  I    
Sbjct: 703 MMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLA 762

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNVAL---------ALHGYGLRALKLF 120
              D++  N L+DMYAKC D   +  +FD M  ++  +         A +GY   ALK+F
Sbjct: 763 HDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIF 822

Query: 121 NMMHTLGIWPDKITFTGLLSACSHSGLVNMGR 144
           + M    I PD+ITF G+L+ACSH+G V+ GR
Sbjct: 823 DSMRQSHIMPDEITFLGVLTACSHAGKVSDGR 854

[Close]

BLAST of Spg005700 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-23
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           MI GY R G   E+  +FREM+  G   D+FT+V +L+ C+   SL+ G+ +  YI+   
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKN--------VALALHGYGLRALKLFN 120
           I+ D ++ NAL+DMY KC     AQ +F  M  ++        V LA +G G  A+K+F 
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFF 458

Query: 121 MMHTLGIWPDKITFTGLLSACSHSGLVNMGR 144
            M  + I PD IT+ G+LSAC+HSG+V+  R
Sbjct: 459 QMQDMSIQPDDITYLGVLSACNHSGMVDQAR 489

[Close]

BLAST of Spg005700 vs. ExPASy TrEMBL
Match: A0A6J1EJQ7 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111434951 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-47
Identity = 121/283 (42.76%), Postives = 133/283 (47.00%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +IGGY+RNGFCKEAFLLFR+MR  GFQ D FTLVHL SIC++SY+LD GKCVHLY+EITG
Sbjct: 212 IIGGYSRNGFCKEAFLLFRDMRVWGFQPDLFTLVHLFSICTRSYNLDMGKCVHLYVEITG 271

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+FDQILRNALLDMYAKC D LSA+TIFDRM+DKNV                        
Sbjct: 272 IEFDQILRNALLDMYAKCGDLLSARTIFDRMIDKNVVSHTSMISAYSKHGLFRYAREVFD 331

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 332 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTIMPDEATLVSVLSACSQIGDLAM 391

[Close]

BLAST of Spg005700 vs. ExPASy TrEMBL
Match: A0A6J1I2L8 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470348 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.2e-46
Identity = 119/283 (42.05%), Postives = 132/283 (46.64%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +IGGY+RNGFCKEAFLLFR+MR  GFQ D FTLVHL SIC++SY+LD GKCVHLY+EITG
Sbjct: 212 IIGGYSRNGFCKEAFLLFRDMRVWGFQPDLFTLVHLFSICTRSYNLDMGKCVHLYVEITG 271

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
            +FDQILRNA+LDMYAKC D LSA+TIFDRM+DKNV                        
Sbjct: 272 TEFDQILRNAMLDMYAKCGDLLSARTIFDRMIDKNVVSHTSMISAYSKHGLFRYAREVFD 331

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 332 QIPEKNVISWNSMISCYVQEGRCKEALLLFQQMCETTIMPDEATLVSVLSACSQIGDLAM 391

[Close]

BLAST of Spg005700 vs. ExPASy TrEMBL
Match: A0A6J1D6T6 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111017876 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.7e-43
Identity = 119/283 (42.05%), Postives = 128/283 (45.23%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           MIGGY+R GFCKEAFL FREMRELGF  D FTLV+LLSICS+SY+LD GKCVHLYIEITG
Sbjct: 219 MIGGYSRTGFCKEAFLTFREMRELGFHPDHFTLVNLLSICSRSYNLDLGKCVHLYIEITG 278

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+ DQILRNALLDMYAKC + LSA  IFDRML+KNV                        
Sbjct: 279 IEVDQILRNALLDMYAKCGNLLSAWRIFDRMLEKNVVSSTSMISAYSKHGLIRNARDVFE 338

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 339 QIPKKNVVSWNSMISCYVQEGKSKEALLLFQQMCETPIMPNEATLVSVLSACSQIGDLAM 398

[Close]

BLAST of Spg005700 vs. ExPASy TrEMBL
Match: A0A5A7TQY7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00460 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.2e-42
Identity = 117/283 (41.34%), Postives = 124/283 (43.82%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           MIGGY RNG CKEAFLLFREMRE GFQ DQFTLVHLLS+CSKS  LD GKCVH Y+EITG
Sbjct: 225 MIGGYFRNGLCKEAFLLFREMRESGFQPDQFTLVHLLSMCSKSCRLDIGKCVHHYVEITG 284

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+ DQILRNALLDMYAKC D L AQTIF RM+ K V                        
Sbjct: 285 IEVDQILRNALLDMYAKCGDLLFAQTIFHRMIHKTVVSFTSMISAYSNHGLIHHAREIFD 344

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 345 QIPEKNVISWNSMMSCYVQDGQCKEALLLFQQMCETTTIPDETTLVSVLSACSQIGDLAM 404

[Close]

BLAST of Spg005700 vs. ExPASy TrEMBL
Match: A0A1S3C6H9 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103497406 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.2e-42
Identity = 117/283 (41.34%), Postives = 124/283 (43.82%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           MIGGY RNG CKEAFLLFREMRE GFQ DQFTLVHLLS+CSKS  LD GKCVH Y+EITG
Sbjct: 225 MIGGYFRNGLCKEAFLLFREMRESGFQPDQFTLVHLLSMCSKSCRLDIGKCVHHYVEITG 284

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV------------------------ 120
           I+ DQILRNALLDMYAKC D L AQTIF RM+ K V                        
Sbjct: 285 IEVDQILRNALLDMYAKCGDLLFAQTIFHRMIHKTVVSFTSMISAYSNHGLIHHAREIFD 344

Query: 121 ------------------------------------------------------------ 144
                                                                       
Sbjct: 345 QIPEKNVISWNSMMSCYVQDGQCKEALLLFQQMCETTTIPDETTLVSVLSACSQIGDLAM 404

[Close]

BLAST of Spg005700 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-26
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +I G+  NG  +EA  L+ EM   G + D FT+V LLS C+K  +L  GK VH+Y+   G
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 252

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKN--------VALALHGYGLRALKLFN 120
           +  +    N LLD+YA+C     A+T+FD M+DKN        V LA++G+G  A++LF 
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 312

Query: 121 MMH-TLGIWPDKITFTGLLSACSHSGLVNMG 143
            M  T G+ P +ITF G+L ACSH G+V  G
Sbjct: 313 YMESTEGLLPCEITFVGILYACSHCGMVKEG 343

[Close]

BLAST of Spg005700 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-26
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +I G+  NG  +EA  L+ EM   G + D FT+V LLS C+K  +L  GK VH+Y+   G
Sbjct: 60  VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 119

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKN--------VALALHGYGLRALKLFN 120
           +  +    N LLD+YA+C     A+T+FD M+DKN        V LA++G+G  A++LF 
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 179

Query: 121 MMH-TLGIWPDKITFTGLLSACSHSGLVNMG 143
            M  T G+ P +ITF G+L ACSH G+V  G
Sbjct: 180 YMESTEGLLPCEITFVGILYACSHCGMVKEG 210

[Close]

BLAST of Spg005700 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 7.2e-26
Identity = 60/152 (39.47%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           ++ G+ +NG   EA  +F +MRE GF+ D  T V LLS C+++ ++  G  VH YI   G
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNV--------ALALHGYGLRALKLFN 120
           +  +  L  AL+++Y++C D   A+ +FD+M + NV        A   HGYG +A++LFN
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFN 298

Query: 121 MMH-TLGIWPDKITFTGLLSACSHSGLVNMGR 144
            M    G  P+ +TF  +LSAC+H+GLV  GR
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGR 330

[Close]

BLAST of Spg005700 vs. TAIR 10
Match: AT3G21470.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-25
Identity = 59/150 (39.33%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           +I GY +NG+  +A   F  M+  G++ D  T+  +LS C++S  LD G+ VH  I   G
Sbjct: 245 LIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRG 304

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNVA--------LALHGYGLRALKLFN 120
           I+ +Q + NAL+DMYAKC D  +A ++F+ +  ++VA        LA+HG G  AL++F+
Sbjct: 305 IELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFS 364

Query: 121 MMHTLGIWPDKITFTGLLSACSHSGLVNMG 143
            M +L + PD+ITF  +L+AC H G +  G
Sbjct: 365 TMESLDLKPDEITFIAVLTACVHGGFLMEG 394

[Close]

BLAST of Spg005700 vs. TAIR 10
Match: AT3G09040.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 6.1e-25
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 0


Query: 1   MIGGYTRNGFCKEAFLLFREMRELGFQSDQFTLVHLLSICSKSYSLDKGKCVHLYIEITG 60
           M+ G+++NGF +EA   ++EMR  G   DQ T V +L +CS   SL +G+ +H  I    
Sbjct: 703 MMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLA 762

Query: 61  IQFDQILRNALLDMYAKCTDFLSAQTIFDRMLDKNVAL---------ALHGYGLRALKLF 120
              D++  N L+DMYAKC D   +  +FD M  ++  +         A +GY   ALK+F
Sbjct: 763 HDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIF 822

Query: 121 NMMHTLGIWPDKITFTGLLSACSHSGLVNMGR 144
           + M    I PD+ITF G+L+ACSH+G V+ GR
Sbjct: 823 DSMRQSHIMPDEITFLGVLTACSHAGKVSDGR 854

The following BLAST results are available for this feature:

BLAST of Spg005700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571425.1	6.9e-47	42.76	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7011190.1	6.9e-47	42.76	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022928049.1	6.9e-47	42.76	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucur...	[more]
XP_038900653.1	9.0e-47	43.46	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benin...	[more]
XP_022971672.1	4.5e-46	42.05	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucur...	[more]

BLAST of Spg005700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MQA3	3.5e-25	43.05	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
P93011	1.0e-24	39.47	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX...	[more]
Q9LVF9	2.2e-24	39.33	Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana OX...	[more]
Q9SS83	8.5e-24	39.47	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop...	[more]
Q9LSB8	2.5e-23	40.40	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]

BLAST of Spg005700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJQ7	3.3e-47	42.76	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc...	[more]
A0A6J1I2L8	2.2e-46	42.05	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc...	[more]
A0A6J1D6T6	1.7e-43	42.05	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Mom...	[more]
A0A5A7TQY7	4.2e-42	41.34	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C6H9	4.2e-42	41.34	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc...	[more]

BLAST of Spg005700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21065.1	2.5e-26	43.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.2	2.5e-26	43.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	7.2e-26	39.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G21470.1	1.6e-25	39.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G09040.1	6.1e-25	39.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..151 e-value: 1.0E-23 score: 86.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 1..26 e-value: 8.4E-6 score: 25.7 coord: 69..96 e-value: 0.1 score: 12.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 1..29 e-value: 4.2E-4 score: 18.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..28 score: 9.262356
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 97..143 coord: 1..96
None	No IPR available	PANTHER	PTHR24015:SF1985	OS09G0555400 PROTEIN	coord: 97..143 coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005700.1	Spg005700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding