Spg005430 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005430
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold6: 35608965 .. 35617283 (+)
RNA-Seq ExpressionSpg005430
SyntenySpg005430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGACATCTCATTGTCTCTAATTCTCTTAGAGATCTCTCCCAAAAGACTCCCACAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGTTGCGTTTTCATTCTTATTGGCAAGAAAAGGCGAATTGATCAAGGCTTTCTACAAAAGTAAGTTTTCTATGAAATCCTTGATCACTAGGATCAATCTAGTTTATTTTTTAGCATGTTTATAGCCTATGTACAACCCATTAAATATAGATTTACTGCTGTAATATTTTGCAAATTGTATTGGTATTTCAATTAAAATCTAAGACTCTGAGTAGGTTCGGTAATACTTTCCGCTGCGTGGGGCTTTTATCCCTTCAGTCGTGAGTGCTGGGTGGGCCCCACTACGACAAAGACAATGGGAGTGTGAGGCGGGCCCCACTACATCGTAGGACTACTAGTAAACGTTAGTTGTACCGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAACGTTTGATGTACTTGACATGCCTTGCTAGATTTTTAATGACAAACTTGCGAGATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAATGCTTTGGTTGAGCATATTTATGCCGTTTAAAGGTTTATCACGTGTTTTGGCTACCGGATTTAAAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTATTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGAATAAGCTTCAGTACGTGGGCGAAGTTGTATATCGAGGTTGTTCATATTGTAAATGTTTTGTAAGGATTCGATAATATAGTCCTAGAGGTCTTGGTTATATAAACCCTAGTTGTATATGTTTTTTGGTTGTGATATCTATATCAGGTTATCTTCCAAACCAAGTTTTGTCAGGGCTGCACCTCGTGTATGTTAAAAGGTTTTCGTGGATTCCGCTGTGTTGTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGAAAATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGAAAACTTGGTATCAGAGCAGTTAGCTCCATGGGAAATGAGACATTGTAGTTAGTGCTAAGAAGAATCCAGGAAGTACACAGTTAGATGTTGGGTCAGTTCAGATAGATCTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAGAATGTGGGTATAAGTTTAGTACCATGCATCTGAGTTAAGTATCTATAACATGTCTGATGTGTTGATATGTTATAGGAGTCATGCCACCACGTACCAGCAGATGACGCAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAATACCCCGAGAGGTTAGAATGAGGCAGGGAGTGAGCGATTTGCTAGATTTGCGCAGGAGATCGGTAGGCCAGGGAGAGCAGGGCCTAGTGATCCCAAAAAGTTGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCACGGATCCAGCTGACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGTGATGAGTTGTCCTGAGGAGCGAAAAGTCAAATTAGCCACATTCCTTTTGCAGAATGAGGCGGAGGGATGGTGGAAATCCATTATAGCCAAGCGTAGTGATGCACGTACATTAGATTGGCAGACATTCAGAGGCATATTCCAGGAAACGTACTACCCCACCACATATTGTGAGGCGAAGAGGGATGGGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACCGAGCTTTCACGGTATGCTGAAGTGATTGTGGCATCTGAGAGTGACAGATGTCGCAGCTTTGAGAGAGGGTTGCGTTTTGAGATACGTACCCCAGTTACCGCTATTGCCGAGTGGACGGATAGACTGTCTTACGTGTGGAGTAGAGTATTATAGAGGAAAAGTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGAGTTCAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGGTAGTGCCTATTAGAGGTAAAGTCAGAGAGCCCCCAGTCAGTCTGCAAGTTCGGTAGCAAGACCGCGGGCAGGTTAGGAGTCCGTTGCTAGTGAATCCAGGAGAACCTCATGTGCAAGTTGTGGCGAGAATCATCGGGGTCAGTGTCTTGTTGGCGCTGGGGTGTGTTACAAGTGTGGACAACCAGGGCATTTCAAGAGAGATTGCCCACAGCTGAGGGCAGCAGTTCAGAGGGACCAGGGAGTTGAGTCCCACACAGTTGAGCAACCGAGAGTCTTAGCAGGCGCATGAGAAGGCACTAGTGGTGCAAGGCAAAAGGGGGTTGTGGGGAGACCTAGGCAGCAGGGAAAAGTCTACGCCATGACTCAAGAGGGAGCAGAGGATGCACCAGATGTGATCACTGGTACGATTTCGATTTGTAATGTACCTACACGTGTTTTATTAGATCAAGGTGCTACGCATTCCTTTGTTTCTAGCATGTTTTTAACTAAGCTGAATAGGATGCTAGAGCCGTTATCTGGGGAGTTAGTCATATGCACTCCAGTTGGTGATGTTTTATTAGTCGGTGAAGTGTTGTGTGATTGTGAGGTTGTAGTAGAAGGTCTCTGTATGTTAGTGGATCTTCTTCCCCTAGAGTTGCAGGCGTTGGAAGTGATTTTGGGAATGTATTTCTTATTCACTCACTATGCTTCTATGGATTGCCATAGGAAGGAAGTGACTTTTAGGAAACCATGTTTGACTGAAGTGGTTTTCAGGGGTGAGAGGAAGATTATTCCTACGAGTTTGATTTCAGCTATGAAAGCTGAGAAGTTGTTGAGGAAGGGTTGTACAATGTTTCTTGCACACGTAGTAAAGGTGCAAGAAGAAAAGCTGAAACCAAAAGATGTTCCTGTGGTGAATGAATTTCTTGATGTTTTCCCAGCTGATCTATCGGGTTTGCCACCTGATAGAGAGGAGGAGTTCATTATTGAATTGTTACCAGGAACAACACCTATTTCACATGCACCATACAGAATGGCTTCGAGCGAGCTTAAGGAGCTAAAGGTGCAGTTGAAGGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTATCACCTTGGGGAGCTCCACTGTTATTCGTGAAGAAGAAAGATGGTACCTTGAGATTATGCATTGATTACAGGCAGCTAAACAAGGTCACGATACGTAACAAGTATCCCCTAACACGCATTGATGACTTGTTTGACCAGTTAAGGGGAGCAACAGTATTCTCTAAGATTGATCTAAGGTCAGGATACCACCAGCTGAAGGTTAGGGAATCAGATATTCCTAAGACAGCATTCAGAACGAGGTACGGGCACTATGAGTTTTTAGTGATGCCATTCGGTTTAACGAATGCGCCAGCAGTTTTCATGGACCTCATGAACAGGGTCTTCCATCAGTATTTAGATCAGTTTGTGATAGTGTTCATCGACGACATTCTAGTTTATTCAATTGACAGAAAGCCCATGAGGAACATCTTAAGAATTGTTCTACAGACACTACGTGATAAACAGCTATACGCTAAGGTCAGGAAATGTGAGTTCTGGTTGAAACAAGTAGTGTTCATAGGGCATATAGTTTCAGCGGACGGAGTTAGTGTTGACCCGCAGAAAGTGGAAGTTGTTGTCAACTAAGAGAGACCAGCTAGTGCAACAGAGGTGCGTAGTTTCCTCGGCCTGGCCGGATACTACAGACGTTTTGTTGAAGATTTCTCACGGTTAGCATTACCCTTGACAACTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGTGAACAAAGTTTCCAGGAGCTGAAAAACAGATTGGTGTCAGTGCCTATTCTAACACTTCCTGTAACAGGGAAGGAGTATGTGATCTATTGTGATGCTTCGAGGAAAGGATTAGGTTGTGTGCTGATGCAGGAAGGAAAGGTAATAGCTTATGCTTCAAGGCAGTTGAAGAAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCGTTCTAGCACTGAAGATCTGGAGACATTATTTATTCGGTGAGAAGTGCCATATTTTCACAGATCATAAGAGTTTGAAGTACATCTTTGATCATAAAGAGCTAAATCTGAGGCAGAGACAATGGCTAGAACTGATTAAAGACTATGACTGTACCATAGAATATCATCCAGGTAAGGCTAACGTGGTAGCAGATGCGTTAAGTAGGAAGTCGAGGCTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAAGCTTGCTAAGTGAGTTAAGAGGTTTCAAGGCGGTTGTGACTGCAGAAAGCTCAAGGGATCTTTTAGCTCAATTTCAGGTTAGATCTTCTTTAGTAGCAGAGATTATGAGAAGGCAGCCAGAGGACAATAATTTTCAGAAGATGCTTGCAAAGTCCAAGCAAGGCCCAGAGGCAAATTTTGAGCTGAGAGCAGACGGAGCCATAGTTAAGCAGGGAAGACTATGTGTTCCGAGTATTAGTGAGTTTAAGAGTGCTATATTAGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGGAAACACCAAGATGTATAGAACTTTGAAGAAAACTTATTGGTGGCCTGGTATGAAGCGGGAGATAGCTGAATATGTCGATAGATGTTTGATCTGTCAACAGGTTAAACCAGTGAGACAAATGCCAGGAGGACTCCTTAATCCACTGTCAGTGCCAGAGTGGAAGTGGGAGCATATTACCATGGATTTTTTGTCTGGATTACCTCGTACTGCTAGTGGACATGATGGTGTATGGGTAATAGTGGATAGACTCACCAAGACAATGCGGTTTATACTGATTAAAGCGACGCCTACATTAGATCAGCTAGCTAAGTTATACGTCGACAGGATTGTGAGTCAACATGGAGTGCCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAGTTTTTGCCTAGTGTGCAGAAAGAAATGGGAACAAAGTTGAAGTTCAGTACCGCGTTCCATCCCCAGACAGATGGTCAGTCAGAGAGGACCATCCAAACCTTAGAGGACATGTTGGGAGCATGTGTTCTTCAGTTTAAGGGAAGTTGGGATAACCACTTATCACTTATGGAGTTCGCTTATAACAACAGCTACCAGTCTAGTATCAGCATGGCACCATTTGAGGCTTTGTATGGCAGACCATGCAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAACGAAAGCTAGTTGGTCTTGAGTTGGTACAAGTTACATCGGACAATATTAAGCTGATTAGGGAGAATCTGAAAATAGCTCAGGATCGACAGAAGAGCTATGCAGATAAAGGACGAAGAGACTTAGAGTTCCAGGTTGGAGATCAAGTTTTCTTAAAGTTATCCCTGTGGAGAGGTGTTCTTCGCTTCGGGAGGAAAGGTAAGCTGAGTCCTAGATATATTGGTCCTTACCAGATAATAGAACGAGTGGGACCAACAACCTATAGACTTGAGTTGCCAGCGGAACTCGCTCGAATACATGATGTTTTTCATGTGTCCATGTTGAGGAAATATATTCCAGATCCATCCCATGTATTGCAAATGCAACCGATTGAGCTGAAATAAGACTTGAGTTATAAAGAGGAAGCGGTTCAAATCCTCAACATGAACGAGCAAGTTTTGAGGAACAAAACGATCCCACTTGTGAAAGTTATTTGGAGACATCATGGAGTAGAGGAGGCAACCTGTGAGTCAGAAGATCAGGTGAGGAGGAGTTACCCGACACTCTTCACCTAAGGACTTCTAAATTTCGAGGGCGAAATTTCATAAGGGGGAGGTAAGTTGTAAACCCGAGACTTTCCCTTAGATAATTTTCTCTTGTCAACTATTGGTGGTTTCATTGTTGGACTAAGTTGTTGGAAATTATCAAGTTAAAAGAAGAAAGAAAATAAAAGGAAAAGGAAAAGAAATCAGAAAAACAAAAGGAAAAAAAAAAAAAGAAAGAAAATGAGTGGGAATGGACAGCACAAAAGCCCACCACCGACTAGACGTTTTATCAGCCTATTTTCATTTCATTTCTCCATCATTTTCCATTCAAATCTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGATGATGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCATAATGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATGTTCTTGAACGTTAGTTCATTTTCTAATAAATTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACTAGGATGATCTCTGGTTTTCTCTGATGTTTTGAGCACTCTGGGGTGTACAAGTTGAATCAGAAGCTCTGTTTGGTATGGTTGGAAAGCTTATTAAATATCCTACAACTTTCATGAAGAATTCGTGAGCCCAAAATTACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGAAACATTGGTTGAGAATCTCGTTTCATTTCTTCCGGTAAGTTGTAGAGCGTTCGAAAATGAAGAGTTTGATGTGTAGTACATTTATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAAAATCTGGAAATCGGGAAAGTAGAATGTGAATGTGATTCTTAATTCAATTGTCTAGAATTCTTGAGAAAGGAAGGACAAAGCTAATTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACAGTGGGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTTATATGAATGATACATGATTTCTATGAACGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGTTAATGAATTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGTATTAGCAAGTACTTTAAAATGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAAGCATGTCTTAATGTTTTCATGTGATTTTCTTAGATTTCTGTTGACTACATGATTGAGATATTGAACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTCGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGATTGTTGGGCGGGCCTCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCGCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACCGGGCGTGCCCTACACAACGTAGATCGATCATGTTAGTTAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTACTGACGAACTTGCGAGATGTTTTAGAACGCCTTTATCCATACACGTTTATGTTAAACGCTTTGGTTGAGCATATTTATGCGTTTAAAGGTTTATCACGTGTTTTGGCTACCAGATTTAAAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGACCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGAACAAGCTTCAGTACGTGGGCGAAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCATGGTTATATAAACCCTAGTTGTATATGTTTTTTGGTTGTGATATCTATATCAGGTTATCTTCCAAACCAAGTTTTGTCAGGGCTGCACCTCGTGTATGTTAAAAGGTTTTCATGGATTCCGTTATGTTGTGTTTCATGTAGAATGTTTTATATCTATGATTTGTATGTTTATCAGGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTCTTCGTAG

mRNA sequence

ATGAAAGACATCTCATTGTCTCTAATTCTCTTAGAGATCTCTCCCAAAAGACTCCCACAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGTTGCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGAATAAGCTTCAGTACGTGGGCGAAGTTGTATATCGAGGTTGTTCATATTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGAAAATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGAGTTCAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGATGATGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCATAATGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGGTAGCAGAGAACCTCGAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGAAACATTGGTTGAGAATCTCGTTTCATTTCTTCCGATTTCTGTTGACTACATGATTGAGATATTGAACCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGACCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGAACAAGCTTCAGTACGTGGGCGAAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTCTTCGTAG

Coding sequence (CDS)

ATGAAAGACATCTCATTGTCTCTAATTCTCTTAGAGATCTCTCCCAAAAGACTCCCACAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGTTGCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGAATAAGCTTCAGTACGTGGGCGAAGTTGTATATCGAGGTTGTTCATATTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGAAAATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGAGTTCAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGATGATGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCATAATGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGGTAGCAGAGAACCTCGAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGAAACATTGGTTGAGAATCTCGTTTCATTTCTTCCGATTTCTGTTGACTACATGATTGAGATATTGAACCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGACCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGAACAAGCTTCAGTACGTGGGCGAAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTCTTCGTAG

Protein sequence

MKDISLSLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHIVNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASGFRGREQRRFTPGVNVSGRQEFKRRSGGQLSRQMSSEHLRERVKEEEDDEFRGFEVEEDRKKLMQSQPLHNGFLFGLSYTEGTKRVAENLESVLSVFGAFLETLVENLVSFLPISVDYMIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHIVNVLFNISVGSTGIVRGDDVCWLHAVSS
Homology
[Close]
BLAST of Spg005430 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-22
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 244 MIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHI--------- 303
           M EIL+ RLYGTVCTQV+ ELP+PDTLPTS ESS ++F+TW +LY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 304 ----VNVLFNISVGSTGIVRGDDVCWLHAV 321
               ++++FN+SVGSTGIVRGDDVCWLHAV
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAV 90

[Close]
BLAST of Spg005430 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-21
Identity = 66/134 (49.25%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 24  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI--------- 83
           I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+         
Sbjct: 78  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQ 137

Query: 84  ----VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGG-SAAEPSRGAPTASGFRG 143
               ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP GG +  E     P     R 
Sbjct: 138 VMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTTLESCHHVPADDAGRI 197

[Close]
BLAST of Spg005430 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-21
Identity = 66/134 (49.25%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 24  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI--------- 83
           I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+         
Sbjct: 78  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQ 137

Query: 84  ----VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGG-SAAEPSRGAPTASGFRG 143
               ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP GG +  E     P     R 
Sbjct: 138 VMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTTLESCHHVPADDAGRI 197

[Close]
BLAST of Spg005430 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-18
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 0 

Query: 40  VEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGST 99
           V IELPVPD LPTSA+SS  + STW +LY E VH+             ++++FNVSVGST
Sbjct: 109 VVIELPVPDILPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGST 168

Query: 100 GIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASGFRGREQRRFTPGVNVSGRQE 147
           GIVRG++VCWLHAVFRAK  GGP GG     + G+ T  G    E  RF    +  GR E
Sbjct: 169 GIVRGDDVCWLHAVFRAKTVGGPGGGVT---TWGSSTPRGQIEAESERFARSAHEIGRPE 225

[Close]
BLAST of Spg005430 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-18
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 0 

Query: 7    SLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAK 66
            +L +LE+        L I+  S L V       VEIELPVPDTLPTSA+S   + STW +
Sbjct: 1397 TLSILEVHKSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLE 1456

Query: 67   LYIEVVHIVNVLF-----------NVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGG 113
            LY E VH+    +            ++VGS GIVRG++VCWLHAVFRAK AGGP GG
Sbjct: 1457 LYFESVHVEMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGG 1513

[Close]
BLAST of Spg005430 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 244 MIEILNPRLYGTVCTQVETELPVPDTLPTSVESSRTSFSTWAKLYIESVHI--------- 303
           M EIL+ RLYGTVCTQV+ ELP+PDTLPTS ESS ++F+TW +LY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 304 ----VNVLFNISVGSTGIVRGDDVCWLHAV 321
               ++++FN+SVGSTGIVRGDDVCWLHAV
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAV 90

[Close]
BLAST of Spg005430 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 66/134 (49.25%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 24  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI--------- 83
           I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+         
Sbjct: 78  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQ 137

Query: 84  ----VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGG-SAAEPSRGAPTASGFRG 143
               ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP GG +  E     P     R 
Sbjct: 138 VMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTTLESCHHVPADDAGRI 197

[Close]
BLAST of Spg005430 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 66/134 (49.25%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 24  IYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI--------- 83
           I+  S L V       VEIELPVPDTLPTSA+SS  + STW +LY E VH+         
Sbjct: 78  IFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQ 137

Query: 84  ----VNVLFNVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGG-SAAEPSRGAPTASGFRG 143
               ++++F+V VGSTGIVRG++VCWLHAVFRAK  GGP GG +  E     P     R 
Sbjct: 138 VMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTTLESCHHVPADDAGRI 197

[Close]
BLAST of Spg005430 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 0 

Query: 40  VEIELPVPDTLPTSAKSSRISFSTWAKLYIEVVHI-------------VNVLFNVSVGST 99
           V IELPVPD LPTSA+SS  + STW +LY E VH+             ++++FNVSVGST
Sbjct: 109 VVIELPVPDILPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGST 168

Query: 100 GIVRGENVCWLHAVFRAKLAGGPRGGSAAEPSRGAPTASGFRGREQRRFTPGVNVSGRQE 147
           GIVRG++VCWLHAVFRAK  GGP GG     + G+ T  G    E  RF    +  GR E
Sbjct: 169 GIVRGDDVCWLHAVFRAKTVGGPGGGVT---TWGSSTPRGQIEAESERFARSAHEIGRPE 225

[Close]
BLAST of Spg005430 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-18
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 0 

Query: 7    SLILLEISPKRLPQVLEIYRCSRLVVFAQEGCCVEIELPVPDTLPTSAKSSRISFSTWAK 66
            +L +LE+        L I+  S L V       VEIELPVPDTLPTSA+S   + STW +
Sbjct: 1397 TLSILEVHKSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLE 1456

Query: 67   LYIEVVHIVNVLF-----------NVSVGSTGIVRGENVCWLHAVFRAKLAGGPRGG 113
            LY E VH+    +            ++VGS GIVRG++VCWLHAVFRAK AGGP GG
Sbjct: 1457 LYFESVHVEMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGG 1513

The following BLAST results are available for this feature:
BLAST of Spg005430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062407.12.2e-2263.33uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK... [more]
KAA0062409.15.4e-2149.25reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.15.4e-2149.25putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058280.15.5e-1850.83uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
KAA0042035.19.4e-1848.72DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Spg005430 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg005430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6381.1e-2263.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9N32.6e-2149.25Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY72.6e-2149.25Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7UT172.7e-1850.83CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7TKT04.6e-1848.72Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
BLAST of Spg005430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005430.1Spg005430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity