Spg005275 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005275
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	NAD(P)H dehydrogenase subunit H
Location	scaffold11: 34302135 .. 34305236 (-)
RNA-Seq Expression	Spg005275
Synteny	Spg005275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAGATGAAGTTTCGAAGACTTGGGCGGGGTGGAGAAAGGTTGCCAAAATGGTGGCCTCCGGCAGTTCCCAGATGGACTGACACAACGAATAGGCAGGAATATCAGATAAAAGCTAACAAATTAGTACGAGGTTAGTGAACAAAGATTTCTTATATGTCCATTGGTTCTTCAATTTATTTAAATAAACGTGTAATTTTCTAACTTCATTAAGCATATTTCTTATGGTAACAAGTTGTTTTGGGCTCGTTTGATAACGTTTTCGTTTCCCGTTTTTCGTTTCTGGTTTCTTGTTTCTTGTTTCTTGTTTCCTGTTTCTTGTTTTTTAAGAACTAAAAACATAAACATGTTTCATAACTATTTTTGTTTCTTGTTTCTCTAAAAAAAAGAAACAGAAACAGATATGTGTTTGATAACTGTTTCTCGTTTTTTGATTTTTAGTTGAAATAAAATTTGGTAAAAATAATATAAAAATTATATATAACATACATTAAAATTATAGTCAGAAGTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTAATTCTTATTACTTTTCAATATTCAATATGAAAAAAAAAAAATTCAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACACCTTGGAACGCACCGTTCTTATAGAGAGAGAGGCGCTTTCACATCTTCTTAACCCGAAATGGCAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGGTGTCGGGGGTTCGAATCCCTCCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGCCCATGGCGGGTAGTCAACGGAGGTCGGCGGCGGCCGATAGTCGGAGGTCGACGATGGTGGCCGGTAGTTAGAGGTCGACCGGTAGTCAGAGGTCGAAGGTGGCGGCCGGTTAGCGGAGGTCAGCTTCACCCGGTAGTAGGAGGTCGACGGTGGCGCCTGGTAGTCAGAGGTAGACAGTGGCGGTCGGTCAGCGAAGGTCGATCAGCGGAGGTCGGTGGCGACCGATGGTCAGAGGTCCACGGTAGCAGTTGGTCGCGACCGGTAGTTAGAAGTCAACGCGGCCAGTCGACAGAGGTCGACGACGACCGGTAGTTATAGGTCGAAGGTGGCGGCCGATCGGTGGAGGTCGGTAGTCGGAGATCGACGGTGGCGCTCGGTAGTTAGAGGTCGACAGTGGCGGTCGGTCAGCGGAGGTTGTCGACGGTTGATAGTCAGAGGTTGAAGGTGGCGACCGGTCGGTGAAGGTCGATGGCGACCAGTACTTTGAGGTCAATGGTGGCGACCGGTTGGAGGCATGATAAGTCCAATTTATTACACACTTAGAATCTCCCAATTTGCTTATCTTAGTTGAATTCCTTGCGAAAAATGCTTTAACATGAGTATAATATGTCTATAGGTCCTCATCGGAGCTTTGGAAGCGATTCGACACTTAAACGAGCGAAACCGGAGCGTAAAATGACCAAACTGCCCCTAGAGTCGTCGCAGCGTCGAGACGTTGCCATTGGAGGGTCGAGACGCTGCTCAAATAAGGAAAAAAGGCATTAGCGCGCAGCTGAAGTGGTAGCGTCGCGACGCTATGTGATCTGCATAATTCTTTCCAAGATTGAAGGCCTAGCGTCTCGACGCTAGGCAGTTTTCCAGAATTGTAATTTTCCAAATTTGGCTGGAATTTTTCCATGTTTGAAGACCCAATTCAGCACCATTCTTCCATGAATTGAAGGCCAAGAATCCCTATAAATAGAGGCCTTTGGTGTAGGTTTAGAATCATCCCTCAACACACAATTCACTACAACTTTGTTGTCCATCTCTCTCCCCCTTTCCACCATTCTTCTTAGTTCTTTCTTGCTTTTCTTTATGTATCAAGCTTGTTCTTGCTCCATAAGAGGCTAAGTTCTTCATTCATGTAACCGGGGTGTCAAGAGTAAGTTCATATACTTTTAATGAAATTTCTTGTTTGAATTCTCAAAGCATGTTTATGTGATTTTAGTTCTTTTTCTATAAGTTTAGATTGTGGTAGGAAAGATTGACAACCTTGACCGCACCCTCTCTAAATTTACTTGCTAAATCTTAGTAGCATATAGGTTAACATTATGTTTTTACGCATGCGTCCCTGTTTGTTGCCCGTTGCATGTGAATTAATTCGGCTAGATCCCAATGCAGTTTAGATTAGTTAATAGGCATATTAATTAATTTAAACTAGAATCAAACTTAACGTTTGCATGTTTGTGATAGTGGATCATGATTCTCGGTTTGTTGCCGAAATACGCTGGGCTTAAACTTGTTTTGACTTATTAGTGAAATTGTTGATTTAATTGAATTGAACTTACCATGACTAACCCGGTTGCATGATCTTTAAAGTATTGATTTCTTTCCTTAATTTGATTCTCTTACTTTCCTTTTGCAATATTTTCCATAATTAGTTTTCTTTCCTTGTTTACTTTATTTCCTAAATATTAAAACCCCCCATTAGTCCGGTCATCACAATAAATCTATGATAAGCAAGTTATAATCGTGCTCCCTGTGTTCGACCCCGACCACTACTGCTACAAGTTAGCTTTAGGAATCGTGGATTATAAATTTATTTGATAAGAGACCTCGACAATCTCTTCCGTCAAGGCAGTCAGTCATCAGAGGTTGACAACAACGGGTCGTCAGAGGTCGACGGTAGCAGTCGGCCGCGACTGGTAATCGGAGGTCGACAACGACCGATAGTCGAAGTGGACGGTGGCGCTCAGTCGACAAAGGCTGGTAGTCGAAGGTCGACGGTTGCGGTCGGTCGGTGGCGGTCGGTCAGCGGATGTCGATAG

mRNA sequence

ATGTGTCAGATGAAGTTTCGAAGACTTGGGCGGGGTGGAGAAAGGTTGCCAAAATGGTGGCCTCCGGCAGTTCCCAGATGGACTGACACAACGAATAGGCAGGAATATCAGATAAAAGCTAACAAATTAGTACGAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGGTGTCGGGGGTTCGAATCCCTCCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGCCCATGGCGGGTAGTCAACGGAGGTCGGCGGCGGCCGATAGTCGGAGAGACCTCGACAATCTCTTCCGTCAAGGCAGTCAGTCATCAGAGGTTGACAACAACGGGTCGTCAGAGGTCGACGGTAGCAGTCGGCCGCGACTGGTAATCGGAGGTCGACAACGACCGATAGTCGAAGTGGACGGTGGCGCTCAGTCGACAAAGGCTGGTAGTCGAAGGTCGACGGTTGCGGTCGGTCGGTGGCGGTCGGTCAGCGGATGTCGATAG

Coding sequence (CDS)

ATGTGTCAGATGAAGTTTCGAAGACTTGGGCGGGGTGGAGAAAGGTTGCCAAAATGGTGGCCTCCGGCAGTTCCCAGATGGACTGACACAACGAATAGGCAGGAATATCAGATAAAAGCTAACAAATTAGTACGAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGGTGTCGGGGGTTCGAATCCCTCCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGCCCATGGCGGGTAGTCAACGGAGGTCGGCGGCGGCCGATAGTCGGAGAGACCTCGACAATCTCTTCCGTCAAGGCAGTCAGTCATCAGAGGTTGACAACAACGGGTCGTCAGAGGTCGACGGTAGCAGTCGGCCGCGACTGGTAATCGGAGGTCGACAACGACCGATAGTCGAAGTGGACGGTGGCGCTCAGTCGACAAAGGCTGGTAGTCGAAGGTCGACGGTTGCGGTCGGTCGGTGGCGGTCGGTCAGCGGATGTCGATAG

Protein sequence

MCQMKFRRLGRGGERLPKWWPPAVPRWTDTTNRQEYQIKANKLVRAQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSPMAGSQRRSAAADSRRDLDNLFRQGSQSSEVDNNGSSEVDGSSRPRLVIGGRQRPIVEVDGGAQSTKAGSRRSTVAVGRWRSVSGCR

Homology

[Close]

BLAST of Spg005275 vs. NCBI nr
Match: THG14067.1 (hypothetical protein TEA_017317 [Camellia sinensis var. sinensis])

HSP 1 Score: 95.5 bits (236), Expect = 5.6e-16
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIA 105
           AQRIRARGYEPRC              +TVSGVRIPPRPQPA+KGRTFPSGG+KIMIGIA
Sbjct: 25  AQRIRARGYEPRCTWLR----------TTVSGVRIPPRPQPAQKGRTFPSGGKKIMIGIA 84

Query: 106 DPKLWNLGVGLL 118
           D KL NLG   L
Sbjct: 85  DAKLLNLGPSYL 86

[Close]

BLAST of Spg005275 vs. NCBI nr
Match: KAG5070517.1 (hypothetical protein JHK85_002894 [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-12
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIA 105
           AQRIRARGYEPRCRGFESLL                 RP   KKGR FPSGGRKIMIG+A
Sbjct: 76  AQRIRARGYEPRCRGFESLLAHN--------------RP---KKGRIFPSGGRKIMIGLA 125

Query: 106 DPKLWNL 113
           DPKLWNL
Sbjct: 136 DPKLWNL 125

[Close]

BLAST of Spg005275 vs. NCBI nr
Match: KAG5103944.1 (hypothetical protein JHK82_040914 [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-12
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIA 105
           AQRIRARGYEPRCRGFESLL                 RP   KKGR FPSGGRKIMIG+A
Sbjct: 76  AQRIRARGYEPRCRGFESLLAHN--------------RP---KKGRIFPSGGRKIMIGLA 125

Query: 106 DPKLWNL 113
           DPKLWNL
Sbjct: 136 DPKLWNL 125

[Close]

BLAST of Spg005275 vs. NCBI nr
Match: KAG4909451.1 (hypothetical protein JHK87_055567 [Glycine soja])

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-12
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIA 105
           AQRIRARGYEPRCRGFESLL                 RP   KKGR FPSGGRKIMIG+A
Sbjct: 43  AQRIRARGYEPRCRGFESLLAHN--------------RP---KKGRIFPSGGRKIMIGLA 92

Query: 106 DPKLWNL 113
           DPKLWNL
Sbjct: 103 DPKLWNL 92

[Close]

BLAST of Spg005275 vs. NCBI nr
Match: KAG4914337.1 (hypothetical protein JHK87_051894 [Glycine soja])

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-12
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIA 105
           AQRIRARGYEPRCRGFESLL                 RP   KKGR FPSGGRKIMIG+A
Sbjct: 66  AQRIRARGYEPRCRGFESLLAHN--------------RP---KKGRIFPSGGRKIMIGLA 115

Query: 106 DPKLWNL 113
           DPKLWNL
Sbjct: 126 DPKLWNL 115

[Close]

BLAST of Spg005275 vs. ExPASy TrEMBL
Match: A0A4V3WNW4 (Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIGIA 105
           AQRIRARGYEPRC              +TVSGVRIPPRPQPA+KGRTFPSGG+KIMIGIA
Sbjct: 25  AQRIRARGYEPRCTWLR----------TTVSGVRIPPRPQPAQKGRTFPSGGKKIMIGIA 84

Query: 106 DPKLWNLGVGLL 118
           D KL NLG   L
Sbjct: 85  DAKLLNLGPSYL 86

[Close]

BLAST of Spg005275 vs. ExPASy TrEMBL
Match: A0A5K1HQI3 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30503 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-12
Identity = 49/81 (60.49%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFP----SGGRKIM 105
           AQRIRARGYEPRCRGFESLL                 RPQ   +GR  P    SGGRKIM
Sbjct: 16  AQRIRARGYEPRCRGFESLLAHN--------------RPQ---RGRPLPSFITSGGRKIM 75

Query: 106 IGIADPKLWNLGVGLLSPMAG 123
           IGIAD KLWN GVGLLS   G
Sbjct: 76  IGIADAKLWNSGVGLLSKWNG 79

[Close]

BLAST of Spg005275 vs. ExPASy TrEMBL
Match: A0A5K1HAV1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29079 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-12
Identity = 49/81 (60.49%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFP----SGGRKIM 105
           AQRIRARGYEPRCRGFESLL                 RPQ   +GR  P    SGGRKIM
Sbjct: 15  AQRIRARGYEPRCRGFESLLAHN--------------RPQ---RGRPLPSFITSGGRKIM 74

Query: 106 IGIADPKLWNLGVGLLSPMAG 123
           IGIAD KLWN GVGLLS   G
Sbjct: 75  IGIADAKLWNSGVGLLSKWNG 78

[Close]

BLAST of Spg005275 vs. ExPASy TrEMBL
Match: A0A6D2K9K4 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10052 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 44/75 (58.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIG-- 105
           AQRIRARGYEPRCRGFESLL                   +P ++G  FP GGRKIM+G  
Sbjct: 81  AQRIRARGYEPRCRGFESLLA----------------HNRPKREG-PFPPGGRKIMLGVA 138

Query: 106 IADPKLWNLGVGLLS 119
           IAD KLWNLG+GLLS
Sbjct: 141 IADSKLWNLGMGLLS 138

[Close]

BLAST of Spg005275 vs. ExPASy TrEMBL
Match: A0A6D2HAQ3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS53 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 44/75 (58.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 46  AQRIRARGYEPRCRGFESLLGVGGSNPSTVSGVRIPPRPQPAKKGRTFPSGGRKIMIG-- 105
           AQRIRARGYEPRCRGFESLL                   +P ++G  FP GGRKIM+G  
Sbjct: 81  AQRIRARGYEPRCRGFESLLA----------------HNRPKREG-PFPPGGRKIMLGVA 138

Query: 106 IADPKLWNLGVGLLS 119
           IAD KLWNLG+GLLS
Sbjct: 141 IADSKLWNLGMGLLS 138

The following BLAST results are available for this feature:

BLAST of Spg005275 vs. NCBI nr


Match Name	E-value	Identity	Description
THG14067.1	5.6e-16	69.44	hypothetical protein TEA_017317 [Camellia sinensis var. sinensis]	[more]
KAG5070517.1	3.8e-12	67.16	hypothetical protein JHK85_002894 [Glycine max]	[more]
KAG5103944.1	3.8e-12	67.16	hypothetical protein JHK82_040914 [Glycine max]	[more]
KAG4909451.1	3.8e-12	67.16	hypothetical protein JHK87_055567 [Glycine soja]	[more]
KAG4914337.1	3.8e-12	67.16	hypothetical protein JHK87_051894 [Glycine soja]	[more]

BLAST of Spg005275 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4V3WNW4	2.7e-16	69.44	Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 ...	[more]
A0A5K1HQI3	9.1e-12	60.49	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A5K1HAV1	9.1e-12	60.49	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]
A0A6D2K9K4	2.2e-10	58.67	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10052 ...	[more]
A0A6D2HAQ3	2.2e-10	58.67	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS53 PE=...	[more]

BLAST of Spg005275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005275.1	Spg005275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane