Spg005218 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005218
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 34357207 .. 34359541 (-)
RNA-Seq Expression	Spg005218
Synteny	Spg005218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATACAAACGTGTTGTGGGGGTCTATACCGTGACTATAGAAAGTTCAAAAGGTAACTTACTTTCTCTATGCTGGTTATCGCCTTACTTCACTATGCATTAATTCAAATCGAAAGATATTAATGCTTAAGTTTAATTTCCTCATTTGCTCTGAAAAATATCGCTTACCGTCATTCGTGGGGTATTGTTGCGTCAATTATGCAGGATGTCTGGAGTAGAAAATATGCGTGATTCTTTCTATCGAGCATCTGTGGAATTTGTTTTGAATATGTACAGCAGGTAAATTTTATACTGGTGCTCCTATAAGTATTTGCTCTATAACTTAATGACTATTCGGAAGAAGAAAACTTCTTGTAGTTCTGTCAAATTGGAACTCCTCGTAGTTCTAGCCTTCTAGGCTTGCAAGCTCTATTGGGAATCGCTTGCCAAACTCTTTTGTAGAACACAAATTCTGAAAACATCACTTAACCATGGACATGGAGGAACTTTTTGTTCTTTTCTTTGATGTTTTTCCCCTGTAATTTGTATGATTTATTATACAATGAAGAGGATTTGGTGAGTCAATTTTATCACACTACAGGCACTAGTGATGCAAGATAGACACTCTGAAGCAGATGCAGAGTTGTTGAAGATCTGTCACATTGTCCAGATATTTCCTCCTGCTGTATGTACTATGAACCTTCTTTTCTTAGTAAACTGTAAATACTCAAATTTTCTGATGTCATCTTTGTTGGTTCTCCAGCCTGAGATGGAGATGTTGACTCTAGGCTTGAAGAAACACTTGAAGGTAGAACAGAGAGAATCCTCAATGAATATGTTTATTGGTGTTTGTGGTAAAGAAAGTCATAGGACCGTTGCGGAAGCTCTTAATTTGGTATGTCCTTAAATTTAATCCCCCCCCCCCTCTCTCTCTCTCTTTTTCAATTTTTATTTTTTAAGAATATTTCTTCGTGGGGTGGACATTTAAACTTATGACCTCTCAGAGAAAGTAGAGATGTCTTAATTGTTAAGCTATGCTTATATTGACAACTTAGTTAAACTCAACTGGTTATGACACAAGTAACCACCTACCCTGTGGAGTCATAGGTTTGAAATCCCTTGTTTGAATTATCATAAAATCGGCTTGCCTTATATATGAAGAATTTGAAAAAGAATGCCATCCAGCTTCTAGGAAGACGGCATTTTCTTATACTAGACCTATATCTTTGGAGTGACCTTCAACTAGTAATCTACAAAGATGTAATCTAGGACAAGTGGGAGAAGTGTAATGAGTATAGTGATACCATTATGTAATGGGTATAGTGATGCCCTAGTTTATTGTATTTGTACATTGTATATGTTTTATACATGTATTTATACACCTGCTGCTGTATAGATTATTGTACATCCCACTAAACTAGAGTTTTAGTTCAAGTGGGAGTTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTGTATATTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTATATGTAACTTGAACTAGTATGTGGGAACATACGGGGATCGGTGTTCAAGTAACAACCTAAAAGGTCTATAGTATAGGGATAAGGGTGGGTACCTTATCCTGATAACACTATGTGATACGACCTGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTCAACCATTAGTTATAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCACTTAATCCTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAGAAGGAATTCACTCCTTCTCGCTTTTAGGAGAAGTAGATGAGTGTTCCCTTAAGTAGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCTGAGGGACTTTCTGTTTAATGGTTGGACCATAACAGGTTGTTCATTAGAGGAGCGCTGGTATTTAAGCAGACAGATGTAACACAGGGGTAAAACGGTAATTTGACCCAGTTGTGATTAGGACACTCGTGAAGGATTGACTTACCGACATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAG

mRNA sequence

ATGAGGATACAAACGTGTTGTGGGGGTCTATACCGTGACTATAGAAAGTTCAAAAGGATGTCTGGAGTAGAAAATATGCGTGATTCTTTCTATCGAGCATCTGTGGAATTTGTTTTGAATATGTACAGCAGTTCTGTCAAATTGGAACTCCTCGTAGCACTAGTGATGCAAGATAGACACTCTGAAGCAGATGCAGAGTTGTTGAAGATCTGTCACATTGTCCAGATATTTCCTCCTGCTCCTGAGATGGAGATGTTGACTCTAGGCTTGAAGAAACACTTGAAGGTAGAACAGAGAGAATCCTCAATGAATATGTTTATTGGTGTTTGTGGTAAAGAAAGTCATAGGACCGTTGCGGAAGCTCTTAATTTGGACACTCGTGAAGGATTGACTTACCGACATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAG

Coding sequence (CDS)

ATGAGGATACAAACGTGTTGTGGGGGTCTATACCGTGACTATAGAAAGTTCAAAAGGATGTCTGGAGTAGAAAATATGCGTGATTCTTTCTATCGAGCATCTGTGGAATTTGTTTTGAATATGTACAGCAGTTCTGTCAAATTGGAACTCCTCGTAGCACTAGTGATGCAAGATAGACACTCTGAAGCAGATGCAGAGTTGTTGAAGATCTGTCACATTGTCCAGATATTTCCTCCTGCTCCTGAGATGGAGATGTTGACTCTAGGCTTGAAGAAACACTTGAAGGTAGAACAGAGAGAATCCTCAATGAATATGTTTATTGGTGTTTGTGGTAAAGAAAGTCATAGGACCGTTGCGGAAGCTCTTAATTTGGACACTCGTGAAGGATTGACTTACCGACATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAG

Protein sequence

MRIQTCCGGLYRDYRKFKRMSGVENMRDSFYRASVEFVLNMYSSSVKLELLVALVMQDRHSEADAELLKICHIVQIFPPAPEMEMLTLGLKKHLKVEQRESSMNMFIGVCGKESHRTVAEALNLDTREGLTYRHRSISVDTEMFYSEKSSAVGL

Homology

[Close]

BLAST of Spg005218 vs. NCBI nr
Match: KAA0044615.1 (uncharacterized protein E6C27_scaffold46G003660 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-30
Identity = 89/169 (52.66%), Postives = 101/169 (59.76%), Query Frame = 0


Query: 10  LYRDYRKFKRMSGV------ENMRDSFYRASVEFVLNMYS-------------------- 69
           + +  R+  R SGV      ENMRDSFYRASV+FVLN+YS                    
Sbjct: 293 IVQQLREICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFV 352

Query: 70  ---------SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFP 125
                     +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFP
Sbjct: 353 AGLAEDIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFP 412

[Close]

BLAST of Spg005218 vs. NCBI nr
Match: XP_016901548.1 (PREDICTED: uncharacterized protein LOC103494526 isoform X2 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 89/164 (54.27%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R SGV      ENMRDSFYRASV+FVLN+YS                         
Sbjct: 297 REICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFVAGLAE 356

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFPP   +
Sbjct: 357 DIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFPPEESS 416

[Close]

BLAST of Spg005218 vs. NCBI nr
Match: XP_008453964.1 (PREDICTED: uncharacterized protein LOC103494526 isoform X1 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 89/164 (54.27%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R SGV      ENMRDSFYRASV+FVLN+YS                         
Sbjct: 297 REICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFVAGLAE 356

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFPP   +
Sbjct: 357 DIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFPPEESS 416

[Close]

BLAST of Spg005218 vs. NCBI nr
Match: TYK16974.1 (uncharacterized protein E5676_scaffold130G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 89/164 (54.27%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R SGV      ENMRDSFYRASV+FVLN+YS                         
Sbjct: 358 REICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFVAGLAE 417

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFPP   +
Sbjct: 418 DIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFPPEESS 477

[Close]

BLAST of Spg005218 vs. NCBI nr
Match: XP_022145227.1 (uncharacterized protein LOC111014731 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 7.4e-29
Identity = 88/164 (53.66%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R+SGV      ENMRDSFYR SV+FVLN+YS                         
Sbjct: 290 RQICRISGVKVSFNTENMRDSFYRRSVDFVLNIYSRIPFYSDSILINGEDGRNFVAGLAE 349

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHIVQIFPP   +
Sbjct: 350 DIGIENVRAARIVSAAVAARMRSCFLQAWALVMQDRHSEANAELLKICHIVQIFPPEESS 409

[Close]

BLAST of Spg005218 vs. ExPASy TrEMBL
Match: A0A5A7TTB0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003660 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-30
Identity = 89/169 (52.66%), Postives = 101/169 (59.76%), Query Frame = 0


Query: 10  LYRDYRKFKRMSGV------ENMRDSFYRASVEFVLNMYS-------------------- 69
           + +  R+  R SGV      ENMRDSFYRASV+FVLN+YS                    
Sbjct: 293 IVQQLREICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFV 352

Query: 70  ---------SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFP 125
                     +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFP
Sbjct: 353 AGLAEDIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFP 412

[Close]

BLAST of Spg005218 vs. ExPASy TrEMBL
Match: A0A5D3D166 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001150 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.5e-30
Identity = 89/164 (54.27%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R SGV      ENMRDSFYRASV+FVLN+YS                         
Sbjct: 358 REICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFVAGLAE 417

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFPP   +
Sbjct: 418 DIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFPPEESS 477

[Close]

BLAST of Spg005218 vs. ExPASy TrEMBL
Match: A0A1S3BX00 (uncharacterized protein LOC103494526 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494526 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.5e-30
Identity = 89/164 (54.27%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R SGV      ENMRDSFYRASV+FVLN+YS                         
Sbjct: 297 REICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFVAGLAE 356

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFPP   +
Sbjct: 357 DIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFPPEESS 416

[Close]

BLAST of Spg005218 vs. ExPASy TrEMBL
Match: A0A1S4DZZ2 (uncharacterized protein LOC103494526 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494526 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.5e-30
Identity = 89/164 (54.27%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R SGV      ENMRDSFYRASV+FVLN+YS                         
Sbjct: 297 REICRKSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPHLILINGEDGPNFVAGLAE 356

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHI+QIFPP   +
Sbjct: 357 DIGIENVRAARIVSAAVAARMRSYFLQAWALVMQDRHSEANAELLKICHIIQIFPPEESS 416

[Close]

BLAST of Spg005218 vs. ExPASy TrEMBL
Match: A0A6J1CW03 (uncharacterized protein LOC111014731 OS=Momordica charantia OX=3673 GN=LOC111014731 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.6e-29
Identity = 88/164 (53.66%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 15  RKFKRMSGV------ENMRDSFYRASVEFVLNMYS------------------------- 74
           R+  R+SGV      ENMRDSFYR SV+FVLN+YS                         
Sbjct: 290 RQICRISGVKVSFNTENMRDSFYRRSVDFVLNIYSRIPFYSDSILINGEDGRNFVAGLAE 349

Query: 75  ----SSVKLELLV----------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                +V+   +V                ALVMQDRHSEA+AELLKICHIVQIFPP   +
Sbjct: 350 DIGIENVRAARIVSAAVAARMRSCFLQAWALVMQDRHSEANAELLKICHIVQIFPPEESS 409

[Close]

BLAST of Spg005218 vs. TAIR 10
Match: AT2G43235.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13
Identity = 59/165 (35.76%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 15  RKFKRMSGVE------NMRDSFYRASVEFVLN------MYSSSVKL------ELLV---- 74
           R+  R+SGV+      N  DSFYR S++FVLN        SSSV++      E +     
Sbjct: 270 RRVCRISGVQVTFEPKNTGDSFYRTSIDFVLNACSRAPWESSSVEICSEDAREFIAGLAE 329

Query: 75  -----------------------------ALVMQDRHSEADAELLKICHIVQIFPP---A 125
                                        AL +Q +HSE+ AEL KIC I +IFPP   +
Sbjct: 330 NIGLAKIDAARMVSAAVAARTRSWFLQAWALEIQGKHSESVAELSKICLIHRIFPPNEYS 389

The following BLAST results are available for this feature:

BLAST of Spg005218 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044615.1	8.8e-30	52.66	uncharacterized protein E6C27_scaffold46G003660 [Cucumis melo var. makuwa]	[more]
XP_016901548.1	1.1e-29	54.27	PREDICTED: uncharacterized protein LOC103494526 isoform X2 [Cucumis melo]	[more]
XP_008453964.1	1.1e-29	54.27	PREDICTED: uncharacterized protein LOC103494526 isoform X1 [Cucumis melo]	[more]
TYK16974.1	1.1e-29	54.27	uncharacterized protein E5676_scaffold130G001150 [Cucumis melo var. makuwa]	[more]
XP_022145227.1	7.4e-29	53.66	uncharacterized protein LOC111014731 [Momordica charantia]	[more]

BLAST of Spg005218 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTB0	4.2e-30	52.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D166	5.5e-30	54.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BX00	5.5e-30	54.27	uncharacterized protein LOC103494526 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DZZ2	5.5e-30	54.27	uncharacterized protein LOC103494526 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CW03	3.6e-29	53.66	uncharacterized protein LOC111014731 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Spg005218 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43235.1	3.6e-13	35.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35830	OS05G0299200 PROTEIN	coord: 53..128 coord: 21..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005218.1	Spg005218.1	mRNA