Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA
mRNA sequence
ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA
Coding sequence (CDS)
ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA
Protein sequence
MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMALMV
Homology
BLAST of Spg003925 vs. NCBI nr
Match:
XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])
HSP 1 Score: 134.8 bits (338), Expect = 6.1e-28
Identity = 103/152 (67.76%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAAL-SPTPSP----TPQAAPSPPWRWTPVTKPPPPSTQSPP 60
MPHSALLNALLAAALL SAAA +P PSP TP A+PSPPWRWTP+TKPPP ST S
Sbjct: 1 MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPPSSTPS-H 60
Query: 61 QTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQ-SPSPSSIPPSDLPPSWIGG 120
++KP TPP SSP P PSPTPV P HHAP+ P S PLQ SPSPS P PSWI
Sbjct: 61 ESKP-TPPPSSPPPTPSPTPVLPPHHHHAPTERPVSLPLQKSPSPSPSP----SPSWIAV 120
Query: 121 PPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA 147
PP EAPAPSK KS+AF+NRF++V SVAI AMA
Sbjct: 121 PPPEAPAPSKAKSDAFNNRFSVVASVAIDAMA 146
BLAST of Spg003925 vs. NCBI nr
Match:
XP_022141995.1 (extensin-like [Momordica charantia])
HSP 1 Score: 111.3 bits (277), Expect = 7.2e-21
Identity = 87/141 (61.70%), Postives = 98/141 (69.50%), Query Frame = 0
Query: 11 LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAP 70
+AAALL SAAA P PSP+P A PSPPWRWTP KPP P T S P P P SSPAP
Sbjct: 1 MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60
Query: 71 APSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSDLP-PSWIGGPPSEAPAPSKE 130
+PSPT VPPA P AP +PP P QSP+P + PP+ P PSWI GPP++A APSK
Sbjct: 61 SPSPTTAVVPPAPPTAAPVSPP--PQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKH 120
Query: 131 KSNAFSNRFTIVGSVAIGAMA 147
KSNA NRF++VGSV IGAMA
Sbjct: 121 KSNALKNRFSLVGSVGIGAMA 139
BLAST of Spg003925 vs. NCBI nr
Match:
XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])
HSP 1 Score: 109.8 bits (273), Expect = 2.1e-20
Identity = 87/148 (58.78%), Postives = 99/148 (66.89%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTK 60
MPHS LLNALLAAALL SAAA+ SP+PSPTP A+ SPPWRW P+TKPP +T+
Sbjct: 1 MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60
Query: 61 PSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSE 120
PSTPP PSPT VPP + H P P A P SPSPS P+WI PPSE
Sbjct: 61 PSTPP-------PSPTSVPPPAHHDEP--PTAQP--DSPSPS--------PTWIAEPPSE 120
Query: 121 APAPSKEKSNAFSNRFTIVGSVAIGAMA 147
A +PSK KS+ F N F++VGSVAIGAMA
Sbjct: 121 ALSPSKAKSDGFKNSFSMVGSVAIGAMA 129
BLAST of Spg003925 vs. NCBI nr
Match:
XP_008462882.1 (PREDICTED: classical arabinogalactan protein 4 [Cucumis melo] >KAA0061156.1 classical arabinogalactan protein 4 [Cucumis melo var. makuwa] >TYK29917.1 classical arabinogalactan protein 4 [Cucumis melo var. makuwa])
HSP 1 Score: 67.8 bits (164), Expect = 9.1e-08
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQ 60
M S LLN L A LL+SAAA SP PSP P +A SP W+WTP +P PP +T
Sbjct: 1 MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60
Query: 61 SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
SPP + P+TPP SP P+ SPT PPA SP HAPS AP
Sbjct: 61 SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120
Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGS 146
+P SP+P+ P P PPS G PSEAPAPSKE + A +NRF I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180
BLAST of Spg003925 vs. NCBI nr
Match:
XP_038877309.1 (vegetative cell wall protein gp1-like [Benincasa hispida])
HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 82/185 (44.32%), Postives = 95/185 (51.35%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPP-------PPSTQS 60
M S +L L A LL+SAAA SP PSP P SP W+WTP +PP PP T S
Sbjct: 1 MASSTVLIVLTVALLLISAAANSPVPSPAP-GPESPAWKWTPSNEPPSSPPMAEPPMTTS 60
Query: 61 PPQ---TKPSTPPSSSPAP---AP-----------SPTPVPPA--SPHHAPS-----APP 120
PP + P+TPP SP P AP SPT PP SP HAPS AP
Sbjct: 61 PPSPTISPPATPPEISPIPSSYAPTLPPKANPPTLSPTAQPPVVKSPSHAPSPAKTKAPA 120
Query: 121 ASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSV 146
+P SPSP+ P P+ PPS G PS APAPSK+ + +NRF I GSV
Sbjct: 121 PAPSKMSPSPAKAPKSSKAPASSPPSPNGMMEPPAPSVAPAPSKKDNGGAANRFAIGGSV 180
BLAST of Spg003925 vs. ExPASy TrEMBL
Match:
A0A6J1CJN4 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 87/141 (61.70%), Postives = 98/141 (69.50%), Query Frame = 0
Query: 11 LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAP 70
+AAALL SAAA P PSP+P A PSPPWRWTP KPP P T S P P P SSPAP
Sbjct: 1 MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60
Query: 71 APSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSDLP-PSWIGGPPSEAPAPSKE 130
+PSPT VPPA P AP +PP P QSP+P + PP+ P PSWI GPP++A APSK
Sbjct: 61 SPSPTTAVVPPAPPTAAPVSPP--PQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKH 120
Query: 131 KSNAFSNRFTIVGSVAIGAMA 147
KSNA NRF++VGSV IGAMA
Sbjct: 121 KSNALKNRFSLVGSVGIGAMA 139
BLAST of Spg003925 vs. ExPASy TrEMBL
Match:
A0A0A0K238 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 87/148 (58.78%), Postives = 99/148 (66.89%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTK 60
MPHS LLNALLAAALL SAAA+ SP+PSPTP A+ SPPWRW P+TKPP +T+
Sbjct: 1 MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60
Query: 61 PSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSE 120
PSTPP PSPT VPP + H P P A P SPSPS P+WI PPSE
Sbjct: 61 PSTPP-------PSPTSVPPPAHHDEP--PTAQP--DSPSPS--------PTWIAEPPSE 120
Query: 121 APAPSKEKSNAFSNRFTIVGSVAIGAMA 147
A +PSK KS+ F N F++VGSVAIGAMA
Sbjct: 121 ALSPSKAKSDGFKNSFSMVGSVAIGAMA 129
BLAST of Spg003925 vs. ExPASy TrEMBL
Match:
A0A5A7V3Q7 (Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00010 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQ 60
M S LLN L A LL+SAAA SP PSP P +A SP W+WTP +P PP +T
Sbjct: 1 MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60
Query: 61 SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
SPP + P+TPP SP P+ SPT PPA SP HAPS AP
Sbjct: 61 SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120
Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGS 146
+P SP+P+ P P PPS G PSEAPAPSKE + A +NRF I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180
BLAST of Spg003925 vs. ExPASy TrEMBL
Match:
A0A1S3CHW9 (classical arabinogalactan protein 4 OS=Cucumis melo OX=3656 GN=LOC103501160 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0
Query: 1 MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQ 60
M S LLN L A LL+SAAA SP PSP P +A SP W+WTP +P PP +T
Sbjct: 1 MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60
Query: 61 SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
SPP + P+TPP SP P+ SPT PPA SP HAPS AP
Sbjct: 61 SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120
Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGS 146
+P SP+P+ P P PPS G PSEAPAPSKE + A +NRF I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180
BLAST of Spg003925 vs. ExPASy TrEMBL
Match:
A0A7J7PQK5 (Uncharacterized protein OS=Scenedesmus sp. NREL 46B-D3 OX=2650976 GN=COO60DRAFT_1462786 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = 0
Query: 23 SPTPSPTPQAAPSPPWRWTPVTKPPP-PSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASP 82
SP+PSP+P +PSPP +P PPP PS PP PS PPS SP+P+PSP+P PP SP
Sbjct: 2199 SPSPSPSPSPSPSPPPSPSPSPSPPPSPSPSPPPSPSPSPPPSPSPSPSPSPSPSPPPSP 2258
Query: 83 HHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKS 128
+PS PP+ P SPSPS PP PS PPS +P+PS S
Sbjct: 2259 SPSPSPPPSPSPSPSPSPSPSPPPSPSPS---PPPSPSPSPSPSPS 2301
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038887113.1 | 6.1e-28 | 67.76 | anther-specific proline-rich protein APG-like [Benincasa hispida] | [more] |
| XP_022141995.1 | 7.2e-21 | 61.70 | extensin-like [Momordica charantia] | [more] |
| XP_011659717.1 | 2.1e-20 | 58.78 | vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot... | [more] |
| XP_008462882.1 | 9.1e-08 | 45.16 | PREDICTED: classical arabinogalactan protein 4 [Cucumis melo] >KAA0061156.1 clas... | [more] |
| XP_038877309.1 | 2.3e-06 | 44.32 | vegetative cell wall protein gp1-like [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CJN4 | 3.5e-21 | 61.70 | extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1 | [more] |
| A0A0A0K238 | 1.0e-20 | 58.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1 | [more] |
| A0A5A7V3Q7 | 4.4e-08 | 45.16 | Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
| A0A1S3CHW9 | 4.4e-08 | 45.16 | classical arabinogalactan protein 4 OS=Cucumis melo OX=3656 GN=LOC103501160 PE=4... | [more] |
| A0A7J7PQK5 | 3.2e-06 | 51.89 | Uncharacterized protein OS=Scenedesmus sp. NREL 46B-D3 OX=2650976 GN=COO60DRAFT_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
