Spg003925 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003925
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 4
Locationscaffold4: 2835053 .. 2835502 (-)
RNA-Seq ExpressionSpg003925
SyntenySpg003925
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA

mRNA sequence

ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA

Coding sequence (CDS)

ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCCCTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCACCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCGTGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTTAATGGTTTAA

Protein sequence

MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMALMV
Homology
BLAST of Spg003925 vs. NCBI nr
Match: XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 6.1e-28
Identity = 103/152 (67.76%), Postives = 113/152 (74.34%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAAL-SPTPSP----TPQAAPSPPWRWTPVTKPPPPSTQSPP 60
           MPHSALLNALLAAALL SAAA  +P PSP    TP A+PSPPWRWTP+TKPPP ST S  
Sbjct: 1   MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPPSSTPS-H 60

Query: 61  QTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQ-SPSPSSIPPSDLPPSWIGG 120
           ++KP TPP SSP P PSPTPV P   HHAP+  P S PLQ SPSPS  P     PSWI  
Sbjct: 61  ESKP-TPPPSSPPPTPSPTPVLPPHHHHAPTERPVSLPLQKSPSPSPSP----SPSWIAV 120

Query: 121 PPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA 147
           PP EAPAPSK KS+AF+NRF++V SVAI AMA
Sbjct: 121 PPPEAPAPSKAKSDAFNNRFSVVASVAIDAMA 146

BLAST of Spg003925 vs. NCBI nr
Match: XP_022141995.1 (extensin-like [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 7.2e-21
Identity = 87/141 (61.70%), Postives = 98/141 (69.50%), Query Frame = 0

Query: 11  LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAP 70
           +AAALL SAAA   P PSP+P A PSPPWRWTP  KPP P T S P   P   P SSPAP
Sbjct: 1   MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60

Query: 71  APSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSDLP-PSWIGGPPSEAPAPSKE 130
           +PSPT   VPPA P  AP +PP  P  QSP+P  + PP+  P PSWI GPP++A APSK 
Sbjct: 61  SPSPTTAVVPPAPPTAAPVSPP--PQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKH 120

Query: 131 KSNAFSNRFTIVGSVAIGAMA 147
           KSNA  NRF++VGSV IGAMA
Sbjct: 121 KSNALKNRFSLVGSVGIGAMA 139

BLAST of Spg003925 vs. NCBI nr
Match: XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-20
Identity = 87/148 (58.78%), Postives = 99/148 (66.89%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTK 60
           MPHS LLNALLAAALL SAAA+  SP+PSPTP A+ SPPWRW P+TKPP        +T+
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSE 120
           PSTPP       PSPT VPP + H  P  P A P   SPSPS        P+WI  PPSE
Sbjct: 61  PSTPP-------PSPTSVPPPAHHDEP--PTAQP--DSPSPS--------PTWIAEPPSE 120

Query: 121 APAPSKEKSNAFSNRFTIVGSVAIGAMA 147
           A +PSK KS+ F N F++VGSVAIGAMA
Sbjct: 121 ALSPSKAKSDGFKNSFSMVGSVAIGAMA 129

BLAST of Spg003925 vs. NCBI nr
Match: XP_008462882.1 (PREDICTED: classical arabinogalactan protein 4 [Cucumis melo] >KAA0061156.1 classical arabinogalactan protein 4 [Cucumis melo var. makuwa] >TYK29917.1 classical arabinogalactan protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-08
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQ 60
           M  S LLN L  A LL+SAAA SP PSP P +A SP W+WTP  +P        PP +T 
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60

Query: 61  SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
           SPP    + P+TPP  SP P+               SPT  PPA  SP HAPS     AP
Sbjct: 61  SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120

Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGS 146
             +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NRF I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180

BLAST of Spg003925 vs. NCBI nr
Match: XP_038877309.1 (vegetative cell wall protein gp1-like [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 82/185 (44.32%), Postives = 95/185 (51.35%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPP-------PPSTQS 60
           M  S +L  L  A LL+SAAA SP PSP P    SP W+WTP  +PP       PP T S
Sbjct: 1   MASSTVLIVLTVALLLISAAANSPVPSPAP-GPESPAWKWTPSNEPPSSPPMAEPPMTTS 60

Query: 61  PPQ---TKPSTPPSSSPAP---AP-----------SPTPVPPA--SPHHAPS-----APP 120
           PP    + P+TPP  SP P   AP           SPT  PP   SP HAPS     AP 
Sbjct: 61  PPSPTISPPATPPEISPIPSSYAPTLPPKANPPTLSPTAQPPVVKSPSHAPSPAKTKAPA 120

Query: 121 ASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSV 146
            +P   SPSP+  P     P+  PPS  G      PS APAPSK+ +   +NRF I GSV
Sbjct: 121 PAPSKMSPSPAKAPKSSKAPASSPPSPNGMMEPPAPSVAPAPSKKDNGGAANRFAIGGSV 180

BLAST of Spg003925 vs. ExPASy TrEMBL
Match: A0A6J1CJN4 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 87/141 (61.70%), Postives = 98/141 (69.50%), Query Frame = 0

Query: 11  LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAP 70
           +AAALL SAAA   P PSP+P A PSPPWRWTP  KPP P T S P   P   P SSPAP
Sbjct: 1   MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60

Query: 71  APSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSDLP-PSWIGGPPSEAPAPSKE 130
           +PSPT   VPPA P  AP +PP  P  QSP+P  + PP+  P PSWI GPP++A APSK 
Sbjct: 61  SPSPTTAVVPPAPPTAAPVSPP--PQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKH 120

Query: 131 KSNAFSNRFTIVGSVAIGAMA 147
           KSNA  NRF++VGSV IGAMA
Sbjct: 121 KSNALKNRFSLVGSVGIGAMA 139

BLAST of Spg003925 vs. ExPASy TrEMBL
Match: A0A0A0K238 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 87/148 (58.78%), Postives = 99/148 (66.89%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTK 60
           MPHS LLNALLAAALL SAAA+  SP+PSPTP A+ SPPWRW P+TKPP        +T+
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSE 120
           PSTPP       PSPT VPP + H  P  P A P   SPSPS        P+WI  PPSE
Sbjct: 61  PSTPP-------PSPTSVPPPAHHDEP--PTAQP--DSPSPS--------PTWIAEPPSE 120

Query: 121 APAPSKEKSNAFSNRFTIVGSVAIGAMA 147
           A +PSK KS+ F N F++VGSVAIGAMA
Sbjct: 121 ALSPSKAKSDGFKNSFSMVGSVAIGAMA 129

BLAST of Spg003925 vs. ExPASy TrEMBL
Match: A0A5A7V3Q7 (Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00010 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQ 60
           M  S LLN L  A LL+SAAA SP PSP P +A SP W+WTP  +P        PP +T 
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60

Query: 61  SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
           SPP    + P+TPP  SP P+               SPT  PPA  SP HAPS     AP
Sbjct: 61  SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120

Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGS 146
             +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NRF I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180

BLAST of Spg003925 vs. ExPASy TrEMBL
Match: A0A1S3CHW9 (classical arabinogalactan protein 4 OS=Cucumis melo OX=3656 GN=LOC103501160 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 84/186 (45.16%), Postives = 98/186 (52.69%), Query Frame = 0

Query: 1   MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQ 60
           M  S LLN L  A LL+SAAA SP PSP P +A SP W+WTP  +P        PP +T 
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAP-SAESPTWKWTPTNQPPSSPPTAEPPMTTT 60

Query: 61  SPPQ---TKPSTPPSSSPAPAP--------------SPTPVPPA--SPHHAPS-----AP 120
           SPP    + P+TPP  SP P+               SPT  PPA  SP HAPS     AP
Sbjct: 61  SPPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAP 120

Query: 121 PASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGS 146
             +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NRF I GS
Sbjct: 121 APAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGS 180

BLAST of Spg003925 vs. ExPASy TrEMBL
Match: A0A7J7PQK5 (Uncharacterized protein OS=Scenedesmus sp. NREL 46B-D3 OX=2650976 GN=COO60DRAFT_1462786 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 23   SPTPSPTPQAAPSPPWRWTPVTKPPP-PSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASP 82
            SP+PSP+P  +PSPP   +P   PPP PS   PP   PS PPS SP+P+PSP+P PP SP
Sbjct: 2199 SPSPSPSPSPSPSPPPSPSPSPSPPPSPSPSPPPSPSPSPPPSPSPSPSPSPSPSPPPSP 2258

Query: 83   HHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKS 128
              +PS PP+  P  SPSPS  PP    PS    PPS +P+PS   S
Sbjct: 2259 SPSPSPPPSPSPSPSPSPSPSPPPSPSPS---PPPSPSPSPSPSPS 2301

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887113.16.1e-2867.76anther-specific proline-rich protein APG-like [Benincasa hispida][more]
XP_022141995.17.2e-2161.70extensin-like [Momordica charantia][more]
XP_011659717.12.1e-2058.78vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot... [more]
XP_008462882.19.1e-0845.16PREDICTED: classical arabinogalactan protein 4 [Cucumis melo] >KAA0061156.1 clas... [more]
XP_038877309.12.3e-0644.32vegetative cell wall protein gp1-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CJN43.5e-2161.70extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1[more]
A0A0A0K2381.0e-2058.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1[more]
A0A5A7V3Q74.4e-0845.16Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3CHW94.4e-0845.16classical arabinogalactan protein 4 OS=Cucumis melo OX=3656 GN=LOC103501160 PE=4... [more]
A0A7J7PQK53.2e-0651.89Uncharacterized protein OS=Scenedesmus sp. NREL 46B-D3 OX=2650976 GN=COO60DRAFT_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003925.1Spg003925.1mRNA