Spg003282 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003282
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMitochondrial import inner membrane translocase subunit TIM22-4-like
Locationscaffold4: 45535551 .. 45537724 (+)
RNA-Seq ExpressionSpg003282
SyntenySpg003282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAACTGATAGGGAAACTATGGATGTCCTGGCTCTCCTTTCTCTGTTAGGGGGAGTCACCTTTATACCAAATAGGAGGGATTTCCGTTCGTGGAACCCTAACCCAATCCATGGCTTCTCTTGTCGCTCCTTTCTTCATTGCCTTCTGAATCCTTCTTCAGCCGAGGAGTCTATCTTTTCTGTGATATGGAAGGTGAAAGCCAAAGAAGGTGCAGTTTTTCATCGGGCAGGTTCTCCATGGAAGAGTTAATACTCTTGATCGGTTATCGAGAAGGATGCCTACCTTGATCGGCCCGTTTTGTTGCATCCTTTGTCGGATGGCGGAGGAAGACCTTCATTACTTGTTATGGAGATGTGATTTTGCTAGTTCGGTATGGGACGTGTTCTTTGAGATGTTTGACCTGCAGTATGCTAGACACAGGAGAAGATGATCAAGGAGTTCCTTCCCCATCTGCCTTTCTGTGAGAGGGGGAGTTTCTTGTGGCAGACGGGGATTTGTGCTATTGTTTGGGATCTTTGGGGTGAGAGAAACAATAGAATTTTTAGAGGGTTGGAGAGAAGTCTTAATGATGTTTGGACCTTGGCCAAATATTATGTCTCTCTATGGGCGTCGGTGACGCATCTTTTTCGTAATTATCCTGTAGGTCTTATTCTTTTGGATTGGAGACCCTTTTTATGATGGGGTTTTCCTCTTTTGTTGGGCATCGGCCTTTTGTTCGCCCTTGTATTCTTTCATTTATTCTCAATGAAAGTGTGGTTTCATTATCAAAATAAATAAATAAGCACACGACTAGCTAGTTAGTAAAGGAGACATCTTGTGCCTAACTACCACAATAATCAAAGCAATCGTGAAAATCAAAGCACAAACATATGAGACAAACAAATAAGTCAAACAATAATCATAGAAGACAATTATTCAAACGAACCAAAAGCTATAGCAAATAATTCGAACAATCATAATATATCAATGGCTCCACATACCCAATGATGGGGAGGAGATTGAAAAAGATCATTAGTCCTAAACTAAACAACTTACCAACCAAGTTTTCTAGGTCAGTCTACATGACTAACTCTGCTTTGATACCAAATATCCAAATTTCAGCCTAAATTAAGTGATAATACCATACTTTATCACTTAACAAACTCGAGCACAACAAGAAGTGTCGATCAAACCAAACTAAAGTTCTACTCCTTGCTCAAGAGAAACCTGTCTAAAGTTTTGGATTAAAAACTTTTGGGTCTCAACTCACCAAAAGAAACAACACAACTAATCCAAGGAAACGAAATGACAACTCAAACCTCAAGCAAAATATCTAACCCCCTATCTTGTTTTCTAGACCATGCTTCATGCCCATATCCACGTGAATAGACATCACATGACTACAACTAATCTCAACGTTCAACATTCATCACAAGCATCTCAGCATGCTTAAACATATCAAAACACATAATAGTTCAAGAATAGCAATTCAAATAAATCAAATACATCATACAAGGCATACAAAACATGCTACAGGCAACTAACAGACTTAAATAACAAAAACTACTTACCAGAAGGGCTCCTAAAAGTATCCAAAAGGCTCCTAAACAATAGAGACAAGGTTCAGAGATTAGAACGCACTTTGAAAACCTTAATCGAATCTAAGAGAGTGTTCACGAGGGATATTCTTACCCAAATTCAGCCTTAAATCTTACTCAAACACTCCAAAACTGAACCGAGCCTAAAAATGGAAGGATTCCAAGGTTAGATACCAATCTACAGTACTTTAAACGAGTTCAAAAGGGTTTAAAGTGCATTGTTACCTACTGAACCCTACCAAAAGGGCTTGAAACCTTGCTGATTGGTATTCGAAGGTGTTTGAAATCAAAAATCGAAGATCATCGTGAGGGTTCAGATCTGAGATTGAATGGAGTGCGGTCACGAACCCTAAGCGATTCAGGTCCGGTCCGTTTCAGAGGGTTGTCACTGCTGGAACACGGAAACCACGGCTGGAGCAGGGGAAACGCCGGTTTGTGCACTGCCGCAAGGTGTTCGCGCCACCGGAGTTGAAACGCCCACAGAACTGGTGTCCGTTCGTCGTGGGTGCAGCGTTGTCTAGCTTCGGTCGGGGATCTGAACCTTGTGTCCCTAAATACCCAGAAAAATTTCACTACTCTTCTTCAGCAAAATGA

mRNA sequence

ATGTTAACTGATAGGGAAACTATGGATGTCCTGGCTCTCCTTTCTCTGTTAGGGGGAGTCACCTTTATACCAAATAGGAGGGATTTCCGTTCGTGGAACCCTAACCCAATCCATGGCTTCTCTTGTCGCTCCTTTCTTCATTGCCTTCTGAATCCTTCTTCAGCCGAGGAGTCTATCTTTTCTGTGATATGGAAGGTGAAAGCCAAAGAAGGTGCAGTTTTTCATCGGGCAGTTCGGTATGGGACGTGTTCTTTGAGATGTTTGACCTGCAGTATGCTAGACACAGGAGAAGATGATCAAGGAGTTCCTTCCCCATCTGCCTTTCTATCTGAGATTGAATGGAGTGCGGTCACGAACCCTAAGCGATTCAGGTCCGGTCCGTTTCAGAGGGTTGTCACTGCTGGAACACGGAAACCACGGCTGGAGCAGGGGAAACGCCGGTTTGTGCACTGCCGCAAGGTGTTCGCGCCACCGGAGTTGAAACGCCCACAGAACTGGTGTCCGTTCGTCGTGGGTGCAGCGTTGTCTAGCTTCGGTCGGGGATCTGAACCTTGTGTCCCTAAATACCCAGAAAAATTTCACTACTCTTCTTCAGCAAAATGA

Coding sequence (CDS)

ATGTTAACTGATAGGGAAACTATGGATGTCCTGGCTCTCCTTTCTCTGTTAGGGGGAGTCACCTTTATACCAAATAGGAGGGATTTCCGTTCGTGGAACCCTAACCCAATCCATGGCTTCTCTTGTCGCTCCTTTCTTCATTGCCTTCTGAATCCTTCTTCAGCCGAGGAGTCTATCTTTTCTGTGATATGGAAGGTGAAAGCCAAAGAAGGTGCAGTTTTTCATCGGGCAGTTCGGTATGGGACGTGTTCTTTGAGATGTTTGACCTGCAGTATGCTAGACACAGGAGAAGATGATCAAGGAGTTCCTTCCCCATCTGCCTTTCTATCTGAGATTGAATGGAGTGCGGTCACGAACCCTAAGCGATTCAGGTCCGGTCCGTTTCAGAGGGTTGTCACTGCTGGAACACGGAAACCACGGCTGGAGCAGGGGAAACGCCGGTTTGTGCACTGCCGCAAGGTGTTCGCGCCACCGGAGTTGAAACGCCCACAGAACTGGTGTCCGTTCGTCGTGGGTGCAGCGTTGTCTAGCTTCGGTCGGGGATCTGAACCTTGTGTCCCTAAATACCCAGAAAAATTTCACTACTCTTCTTCAGCAAAATGA

Protein sequence

MLTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFSVIWKVKAKEGAVFHRAVRYGTCSLRCLTCSMLDTGEDDQGVPSPSAFLSEIEWSAVTNPKRFRSGPFQRVVTAGTRKPRLEQGKRRFVHCRKVFAPPELKRPQNWCPFVVGAALSSFGRGSEPCVPKYPEKFHYSSSAK
Homology
[Close]
BLAST of Spg003282 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 2   LTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFS 61
           L+DRET +V+AL+SLL   +F   RRD   W+P P+ GF C+SF  CL+N +   ES+ S
Sbjct: 179 LSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVNSTPTSESVSS 238

Query: 62  VIWKVK 68
           +IW++K
Sbjct: 239 LIWRIK 244

[Close]
BLAST of Spg003282 vs. NCBI nr
Match: TYK13538.1 (uncharacterized protein E5676_scaffold299G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-06
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 2  LTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIF 61
          LT+RETM+V + LSL+ G  F   R+D R W+PNP   ++C+S +  LL+PS  +ESIF
Sbjct: 23 LTNRETMEVASFLSLVEGCNFREERKDVRIWSPNPNQEYTCKSLVSLLLDPSPHKESIF 81

[Close]
BLAST of Spg003282 vs. NCBI nr
Match: KAA0039024.1 (uncharacterized protein E6C27_scaffold84G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-06
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 26 RRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFSVIWKVK 68
          RRD R W+PNP+ GFSC+SFL  ++NPS A E +FS++W+VK
Sbjct: 17 RRDVRVWSPNPLEGFSCKSFLQRMVNPSLAGELVFSLVWRVK 58

[Close]
BLAST of Spg003282 vs. NCBI nr
Match: TYK21752.1 (uncharacterized protein E5676_scaffold859G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-06
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 2   LTDRETMDVLALLSLLGGV--TFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESI 61
           LT+RET +V +LLSLL G    F   R D R WNPNP  G++C+S    LL+ +  +ESI
Sbjct: 208 LTNRETAEVTSLLSLLEGFRRNFKEGRMDVRVWNPNPSRGYTCKSLFSLLLDLAPTKESI 267

Query: 62  FSVI 64
           F V+
Sbjct: 268 FDVV 271

[Close]
BLAST of Spg003282 vs. NCBI nr
Match: KAA0043240.1 (zinc finger protein ZPR1-like [Cucumis melo var. makuwa] >TYK29304.1 zinc finger protein ZPR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-06
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 2  LTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFS 61
          LT+RE   V +LLSLL G  F   RRD R W+PNP      +S    LL+PS   ES+F 
Sbjct: 23 LTNREATKVASLLSLLEGCIFREGRRDVRVWSPNP-----SKSLFSLLLDPSPYSESVFD 82

Query: 62 VIWKVKAKEGAVF 75
          V+W+ K  +   F
Sbjct: 83 VVWRAKVPKKVRF 90

[Close]
BLAST of Spg003282 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-10
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 2   LTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFS 61
           L+DRET +V+AL+SLL   +F   RRD   W+P P+ GF C+SF  CL+N +   ES+ S
Sbjct: 179 LSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVNSTPTSESVSS 238

Query: 62  VIWKVK 68
           +IW++K
Sbjct: 239 LIWRIK 244

[Close]
BLAST of Spg003282 vs. ExPASy TrEMBL
Match: A0A5D3CQR3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00110 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-07
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 2  LTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIF 61
          LT+RETM+V + LSL+ G  F   R+D R W+PNP   ++C+S +  LL+PS  +ESIF
Sbjct: 23 LTNRETMEVASFLSLVEGCNFREERKDVRIWSPNPNQEYTCKSLVSLLLDPSPHKESIF 81

[Close]
BLAST of Spg003282 vs. ExPASy TrEMBL
Match: A0A5A7T6A8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001110 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-07
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 26 RRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFSVIWKVK 68
          RRD R W+PNP+ GFSC+SFL  ++NPS A E +FS++W+VK
Sbjct: 17 RRDVRVWSPNPLEGFSCKSFLQRMVNPSLAGELVFSLVWRVK 58

[Close]
BLAST of Spg003282 vs. ExPASy TrEMBL
Match: A0A5D3DDU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001270 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 2   LTDRETMDVLALLSLLGGV--TFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESI 61
           LT+RET +V +LLSLL G    F   R D R WNPNP  G++C+S    LL+ +  +ESI
Sbjct: 208 LTNRETAEVTSLLSLLEGFRRNFKEGRMDVRVWNPNPSRGYTCKSLFSLLLDLAPTKESI 267

Query: 62  FSVI 64
           F V+
Sbjct: 268 FDVV 271

[Close]
BLAST of Spg003282 vs. ExPASy TrEMBL
Match: A0A5A7TIU4 (Zinc finger protein ZPR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00090 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 2  LTDRETMDVLALLSLLGGVTFIPNRRDFRSWNPNPIHGFSCRSFLHCLLNPSSAEESIFS 61
          LT+RE   V +LLSLL G  F   RRD R W+PNP      +S    LL+PS   ES+F 
Sbjct: 23 LTNREATKVASLLSLLEGCIFREGRRDVRVWSPNP-----SKSLFSLLLDPSPYSESVFD 82

Query: 62 VIWKVKAKEGAVF 75
          V+W+ K  +   F
Sbjct: 83 VVWRAKVPKKVRF 90

The following BLAST results are available for this feature:
BLAST of Spg003282 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09969.11.3e-0948.48calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa][more]
TYK13538.11.0e-0649.15uncharacterized protein E5676_scaffold299G00110 [Cucumis melo var. makuwa][more]
KAA0039024.11.4e-0659.52uncharacterized protein E6C27_scaffold84G001110 [Cucumis melo var. makuwa][more]
TYK21752.15.2e-0648.44uncharacterized protein E5676_scaffold859G001270 [Cucumis melo var. makuwa][more]
KAA0043240.16.7e-0643.84zinc finger protein ZPR1-like [Cucumis melo var. makuwa] >TYK29304.1 zinc finger... [more]
BLAST of Spg003282 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg003282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI746.3e-1048.48Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3CQR35.0e-0749.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T6A86.6e-0759.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DDU22.5e-0648.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TIU43.3e-0643.84Zinc finger protein ZPR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of Spg003282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003282.1Spg003282.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane