Spg003201 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003201
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold4: 30706360 .. 30710129 (-)
RNA-Seq ExpressionSpg003201
SyntenySpg003201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGGAGAAGCTCATTAGGGTTTTTTTTATGGAAAGGGGTTGAAGAAGGAAAAGGGGTGCACTTAGTGAGTTGGGAGATAGTGGGAAAACCTGTGAGCCTCGGGGGTCTAGAGCTGGGGAACATGAGAACTCGTAACAAACCCTTGCTTGTAAGCTTTGGCGATTCTGCCTTGAATTCGATTCTCTTTGGGTTAGGATTATTGTGAATAAGTATGGACAACATCCTTTCAAGTGGTTGTCAGTTGGGATCAAAGGCACGTTCAGGAATCTCTAGAAAGATATTTCCTTGGAGCTCCTCTCATTTTCTTCCTTAGTCCAGTGCATTGTGGGTGATGAGAGGGACATTTACTTCTAGGAGGACTAATGGGTGGGGGATTGTTCCCTCTACTCCTTGTTTCGTGGTTATATCAGTTATCTTCCATGAAAAATCGCATTGTGGCTAATGTACTTGGTTCTTTTGGGAGCTTCCCCTCATTTTCCTTTGGCTTTCATTGTCCGTTATTTGATAGAAAAACAACGGACATCCTGGCTCTCTTATCTCTGTTAGAAGGGATTAGCCTTAGACCGGGTAGGAAGGATGTTCGTTATTGGAGTCCTAACCCCTCCCAAGGGCTTCTCTTGTAGTTCTTTCTTTCAATTTTTGTTAAATCCCTCCCTAATTAGAGAGTCTGTTTTTTCGTGTCTGCGAAAGGTCAAAGTTCCAAAGAAAGTCCAGTTCTTCGTTTGGCAAGTCATCCTCGGACGAGTTAATACTTTTGAGAGACTATCGAGAGTGATGTCCCCTTTGGTTGACCCTTCTTGTTGCATTCTTTGTCAGAAGGTAGAGGAAGATCTTGATCATTTGCTGTGGTGTTGTGATTTTGCTCTCTCAGTCTGGAGCCTCTTCTTTGAGGTTTTCAATTTTCAGTTTGCTGGTTATCGTCGTTGCAGTGAGATGATTGAGGAGTTCCTCCTCCATCCATCGTTTCAAGAGAAACGAAGGTTTTTGTGGCTCGCTGGTATTTGTGATATTCTATAGGGGGAAGGAATAATAGAATTTTTAGAGGGGCCAAGCGACTTCCTTGTGAGGTTTGGGCCAATATTAGATTTATGTTTCATTATGAGCCTCGATTTCTAAGGCTTTTTGTAATTGTCAGTTAGGCTTCCTTTGTGTTGGGGCTTGGTTTTTTGGATGCCCTTGTATTCTTTCATTTTTTCTCAATGAAAGTTTGGTTCTTTATTTAAAAAAATAAAATAAAATACAGATGACAAGCTTCAAAGGCGAATGCCATCAATGGCACTGTCTCCAAACAAATGCTTTTATGTAAGGCTGTTGAGGAAACTCAAAACCATATATTTATCCAGTGCCCCTTTGCATGGGATTTTTGGAGCAGAATTTTCAAGGCTTTTGGGTGGAATCAACCTACTCCCAGAGACATGAAAGACTTTCTAATAATGTTGATGACTGGACATCCTTACAAGGAAACCAAAGCTTTGTTATGGCTGCATATCACCCGTTTCTTTTGAATTCTCTGGAAGAAAAGAAATCAGCGAGTTTTTATGGAAAAGGAGCAACCCCCGATAAATTTTTCAATTTTGTCATTTATTATGCTATTTCTTGGTGTAAATTGTCTAACATATTTGCTTCTTACAATTATGCTACCATTTTATCAAATTGGGTTACCTTTTCGTAATCTTCATGGATTTTCCATCCCTTTTGTAAACTTCATACATCAATGAAATTGTTTCTTAAAATATATATGTGTGTGTGTATATATATATCATTATCCATTTTTTCCTTGAAGAAGTTATTTTAAGCAAATTCTACAAGTCAACAATCTTTATTCAGAAAAACAAACATAGTTGCATACTTTCTTGAGTTTTTCAAATGAACAAGGACTACTCCTTTATAACCTTATCTCACTTTCATCAAGAAAGGTCATGAAGTTTTCAAACATTGTTGGAACTTCTAGATAAAATGGACACTGGATGATTATCACTAACAAAGACAAAAGAAAAAGAGTTTAAAATAGAACTTTGATAGAACTCATACATGAGAATAAAACAATTTTCCACAAACAATATAGTGTCTAATTAGATTAAAATCACCTGAATGGAAAAGTATGCAACGAACCATAGAAATGAGGGGCATCCAATTGCCTTTCTTTCCTTTCGAAAAAGAGAAATTTGGTCGATGTAACTCCGTCCCGATAGAGGTGGTGGCAGTGGAGGTGGCACTTTGAGAAATACAAATAAAAGTCAAACTAAATTAATTGAGTTAAACAAGTGAACTACAGTGATACAGAAATAAGCTAGTAATAACTTGTAAGAAGGATTGCGATTATTGTGATTTTGAGTTAAACAAGTGAACTACAGTGATACAGAAATAAGCTAGTAATAACTTGTAAGAAGGATTGCGATTATTGTGATTACTGCTATTTTTTTAATATATTAATTCTGAAAATTTAAATTATATTTTTTTAGTAAAGTATAATACAAATACATACTAAATCAATGTTACTGATAATAAAATTAATTTAATATAAAATATGTTAAGTCCTATTCCATGCCCACGTGCCGATTTCTTAGATCACAACGATGTTTTTTTCCCTTATTTTTTTTCTGACCTCAACAATTGTAGGGTAGGGGATCGGACCATCAACCTTTGAGATGGTAATAGATTTAATCCCCTTGGACTATGGAGATATCTCATCTCCAATTTTTCAACACTCTTTTTTTTTTATTAATATTAATATAAGTCTCATTTCTTATCGAAAGAAAAAAAATGGTAATAGATGTCTTTTCCACTAAACTATGTTCAGGTTGTCACTCTACAACTAAATTCTCTTAAGCACCCAATAATGACACTTCTATCAAGATTAACAGTGTTTTCAAAGCGCAAGGCGCACTCGAAGGCGACAAAAGCTTTTTAATTGCCTCAAGGCGAGAGGCGACAAAAAGGCGTCGCCTGACTAAAGCAAGGCGCACCTAATAAAACAATAAAATAAATATTATTATATAAAAAAAAAGACCTCATTTTTTAAATGTCAAAATCTTAACAAAATCATTTAAAGATTAAAATAAAAATTTGTTGAGGAAAAGAAAGATATTTAAAAAGAAACTAAAATAGAAATGCTTTTTCAATGGGTAAATAAATCGTGGTCGAGTATGTATTTAGAAGGGTAGAAATATTGCCATTTGGCAGTTTGGCTAGCATGCAACTTGTAGTATTTCTTTATAGCTGGCAGCCACTTCTTTAATATTGGTACCCAACCATTCAAATCTTCTACGAAATGTAAGAAAGCGAAGATGGAGTTTTCCCTTCCAATTCTTCTTCCAAATTCCAACCCTTCTTCTTCATTTCCTTCTTCTTTGATAAACTACTGATAGATGGTTGGTCAAAAAAGAGGGATGACTTCTTCAATTCTTTATCTTACTTCTGTGACTATTTTTTTTCTTTAGTACTTCTTTCTTGATTCTTCCTTTCTTTGATTTTTCTTTGAACTTCAATTTTTCTTTTTAATCAAAGAATCAAAGAAGAAATTTGGAAGAAAAACATAAAATTTAGAGTAGAATCGATGAAAAATTGCTTGCCTTCAATAAGGCGAGCGCTTGTGTCGCCTTGAACATATGTTCAAGGCAATTGAAAGGCAGAAAAGGCGAGCGCCTTATTGAAGGTGCTCGCCCTGGGTACTTGCAAGGCGTGAAGGCCTCTCCTCGCCTCGCCTCTCGCCATAGGCGAGCGCCTGGCTGCGCCTCCACAACACTATTCAAGAAAACTGCTTAG

mRNA sequence

ATGCTTTGGAGAAGCTCATTAGGGTTTTTTTTATGGAAAGGGGTTGAAGAAGGAAAAGGGGTGCACTTAGTGAGTTGGGAGATAGTGGGAAAACCTGTGAGCCTCGGGGGTCTAGAGCTGGGGAACATGAGAACTCGTAACAAACCCTTGCTTGTCAAAGTTCCAAAGAAAGTCCAGTTCTTCGTTTGGCAAGTCATCCTCGGACGAGTTAATACTTTTGAGAGACTATCGAGAGTGATGTCCCCTTTGGTTGACCCTTCTTGTTGCATTCTTTGTCAGAAGGTAGAGGAAGATCTTGATCATTTGCTGTGGTGTTGTGATTTTGCTCTCTCAGTCTGGAGCCTCTTCTTTGAGGTTTTCAATTTTCAGTTTGCTGGTTATCGTCGTTGCAGTGAGATGATTGAGGAGTTCCTCCTCCATCCATCGTTTCAAGAGAAACGAAGGCAATTGAAAGGCAGAAAAGGCGAGCGCCTTATTGAAGGTGCTCGCCCTGGGTACTTGCAAGGCGTGAAGGCCTCTCCTCGCCTCGCCTCTCGCCATAGGCGAGCGCCTGGCTGCGCCTCCACAACACTATTCAAGAAAACTGCTTAG

Coding sequence (CDS)

ATGCTTTGGAGAAGCTCATTAGGGTTTTTTTTATGGAAAGGGGTTGAAGAAGGAAAAGGGGTGCACTTAGTGAGTTGGGAGATAGTGGGAAAACCTGTGAGCCTCGGGGGTCTAGAGCTGGGGAACATGAGAACTCGTAACAAACCCTTGCTTGTCAAAGTTCCAAAGAAAGTCCAGTTCTTCGTTTGGCAAGTCATCCTCGGACGAGTTAATACTTTTGAGAGACTATCGAGAGTGATGTCCCCTTTGGTTGACCCTTCTTGTTGCATTCTTTGTCAGAAGGTAGAGGAAGATCTTGATCATTTGCTGTGGTGTTGTGATTTTGCTCTCTCAGTCTGGAGCCTCTTCTTTGAGGTTTTCAATTTTCAGTTTGCTGGTTATCGTCGTTGCAGTGAGATGATTGAGGAGTTCCTCCTCCATCCATCGTTTCAAGAGAAACGAAGGCAATTGAAAGGCAGAAAAGGCGAGCGCCTTATTGAAGGTGCTCGCCCTGGGTACTTGCAAGGCGTGAAGGCCTCTCCTCGCCTCGCCTCTCGCCATAGGCGAGCGCCTGGCTGCGCCTCCACAACACTATTCAAGAAAACTGCTTAG

Protein sequence

MLWRSSLGFFLWKGVEEGKGVHLVSWEIVGKPVSLGGLELGNMRTRNKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKRRQLKGRKGERLIEGARPGYLQGVKASPRLASRHRRAPGCASTTLFKKTA
Homology
[Close]
BLAST of Spg003201 vs. NCBI nr
Match: TYK11201.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-19
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 47  NKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCC 106
           + P+ +KVPKK +FF+ QV+LG +NT +RL + M+ LV P  C LCQK +EDLD+L W C
Sbjct: 117 SSPVRIKVPKKARFFIRQVLLGWINTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDC 176

Query: 107 DFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEK 147
               +VW+ F + F+  F G R     IEEFLLHP F+EK
Sbjct: 177 QHERAVWNSFLQEFDSIFVGQRSVRVTIEEFLLHPPFREK 216

[Close]
BLAST of Spg003201 vs. NCBI nr
Match: KAA0067918.1 (hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-19
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 56  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSL 115
           ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS 
Sbjct: 111 QEVRFFIWQVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLDHLFCDCQYARAVWSS 170

Query: 116 FFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR 148
           F +     FAG R     IEEFLLH SF+++R
Sbjct: 171 FLQKLGVSFAGSRSVRVTIEEFLLHLSFKDER 202

[Close]
BLAST of Spg003201 vs. NCBI nr
Match: TYK04295.1 (serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-19
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 56  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSL 115
           ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS 
Sbjct: 11  QEVRFFIWQVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLDHLFCDCQYARAVWSS 70

Query: 116 FFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR 148
           F +     FAG R     IEEFLLH SF+++R
Sbjct: 71  FLQKSGVSFAGSRSVRVTIEEFLLHLSFKDER 102

[Close]
BLAST of Spg003201 vs. NCBI nr
Match: TYK06215.1 (peroxin Pex14 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-17
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 54  VPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVW 113
           VPKKV+FF+WQ +LG+VNT +RL R  S L  P CC L QK EEDLDH  W C +A +VW
Sbjct: 101 VPKKVRFFIWQNLLGQVNTIDRLVRRTS-LDGPFCCTLFQKAEEDLDHHFWDCQYARAVW 160

Query: 114 SLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR 148
           S F  + +  FAG       IEEFLL   F++KR
Sbjct: 161 SSFLRLLSINFAGMWSVRVTIEEFLLRQPFKDKR 193

[Close]
BLAST of Spg003201 vs. NCBI nr
Match: TYK29954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 52  VKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALS 111
           +KV KKV+FF WQV+L R N  +RL R   P    +CCILC+K +EDLDHLLW C +A +
Sbjct: 227 IKVCKKVRFFTWQVLLDRANIVDRLVRRGEPRWSSNCCILCRKAKEDLDHLLWDCQYARA 286

Query: 112 VWSLFFEVFNFQFAGYRRCSEMIEEFLL 140
           VW  F + F+ + AG R   + IEEFLL
Sbjct: 287 VWGSFLQEFDVRLAGLRTVRKTIEEFLL 314

[Close]
BLAST of Spg003201 vs. ExPASy TrEMBL
Match: A0A5D3CHC7 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.6e-20
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 47  NKPLLVKVPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCC 106
           + P+ +KVPKK +FF+ QV+LG +NT +RL + M+ LV P  C LCQK +EDLD+L W C
Sbjct: 117 SSPVRIKVPKKARFFIRQVLLGWINTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDC 176

Query: 107 DFALSVWSLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEK 147
               +VW+ F + F+  F G R     IEEFLLHP F+EK
Sbjct: 177 QHERAVWNSFLQEFDSIFVGQRSVRVTIEEFLLHPPFREK 216

[Close]
BLAST of Spg003201 vs. ExPASy TrEMBL
Match: A0A5A7VJE4 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00850 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 56  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSL 115
           ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS 
Sbjct: 111 QEVRFFIWQVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLDHLFCDCQYARAVWSS 170

Query: 116 FFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR 148
           F +     FAG R     IEEFLLH SF+++R
Sbjct: 171 FLQKLGVSFAGSRSVRVTIEEFLLHLSFKDER 202

[Close]
BLAST of Spg003201 vs. ExPASy TrEMBL
Match: A0A5D3BYR2 (Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00230 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 56  KKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSL 115
           ++V+FF+WQV+LGRVNT +RL R  +  V P CC+LCQK EEDLDHL   C +A +VWS 
Sbjct: 11  QEVRFFIWQVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLDHLFCDCQYARAVWSS 70

Query: 116 FFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR 148
           F +     FAG R     IEEFLLH SF+++R
Sbjct: 71  FLQKSGVSFAGSRSVRVTIEEFLLHLSFKDER 102

[Close]
BLAST of Spg003201 vs. ExPASy TrEMBL
Match: A0A5D3C1E6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00150 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 55/134 (41.04%), Postives = 69/134 (51.49%), Query Frame = 0 

Query: 10  FLWKGVEEGKGVHLVSWEIVGKPVSLGGLELGNMRTRNKPLLVKVPKKVQFFVWQVILGR 69
           FLW+GV+EG+G HLVSWE+VG+P+  G                         +W      
Sbjct: 97  FLWEGVDEGQGSHLVSWELVGRPMYQGD-----------------------SLWH----- 156

Query: 70  VNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVWSLFFEVFNFQFAGYRR 129
                   R  + LV+P CC+LC+K EEDLDHL W   +A +VWS F +V    FAG R 
Sbjct: 157 --------RKRALLVNPFCCMLCRKAEEDLDHLFWDRHYAQAVWSSFLQVLGVSFAGSRS 194

Query: 130 CSEMIEEFLLHPSF 144
               IEEFLLH SF
Sbjct: 217 VRAKIEEFLLHLSF 194

[Close]
BLAST of Spg003201 vs. ExPASy TrEMBL
Match: A0A5D3C4A7 (Peroxin Pex14 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00790 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 54  VPKKVQFFVWQVILGRVNTFERLSRVMSPLVDPSCCILCQKVEEDLDHLLWCCDFALSVW 113
           VPKKV+FF+WQ +LG+VNT +RL R  S L  P CC L QK EEDLDH  W C +A +VW
Sbjct: 101 VPKKVRFFIWQNLLGQVNTIDRLVRRTS-LDGPFCCTLFQKAEEDLDHHFWDCQYARAVW 160

Query: 114 SLFFEVFNFQFAGYRRCSEMIEEFLLHPSFQEKR 148
           S F  + +  FAG       IEEFLL   F++KR
Sbjct: 161 SSFLRLLSINFAGMWSVRVTIEEFLLRQPFKDKR 193

The following BLAST results are available for this feature:
BLAST of Spg003201 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11201.11.4e-1950.00SIL1 [Cucumis melo var. makuwa][more]
KAA0067918.12.3e-1954.35hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa][more]
TYK04295.14.0e-1954.35serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cuc... [more]
TYK06215.13.7e-1753.19peroxin Pex14 isoform X3 [Cucumis melo var. makuwa][more]
TYK29954.13.7e-1752.27reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg003201 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg003201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CHC76.6e-2050.00SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1[more]
A0A5A7VJE41.1e-1954.35zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3BYR21.9e-1954.35Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 OS=C... [more]
A0A5D3C1E61.8e-1741.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C4A71.8e-1753.19Peroxin Pex14 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of Spg003201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 196..196
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 53..113
e-value: 3.3E-12
score: 46.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003201.1Spg003201.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process