Spg001520 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCTTCTCTATCAGCCCGATCATCATGGGGTAAAGCGACCTAAATTTCCCTTTCCCAATCTACCCCTGTCCCCCTCTAACTTCTACTATATTCATCAGGGTCAAAACCGTCAAATTCAGGGAGACAGTTTCTGAATTTTGGGCTTTGCTTTCTTCAATAATATTATGCCAAAAGAAACGATTCCTCCTCAAATTTGTAGTCAACAAAACCAAGTAAAAAAAAAAAAAAAAAAGAAAAAAAGTAAAAAGAAAAATGGTTCCAAAATGATAATAATCCTGAGCCCTTTTGCTCTTTTTGACCCATTTGGACTCGCTCTCTCTTGCCTCCATGGAATTGAAATGAAATGTTTTGGTCTCTTTTTTCCACTGCTCTCCCCTGTTCATCGAAACCCCAGATTGATTTTTGATTTCTTTTCTAATTCAGCAGTAGAGAAGAAAATGACAACTCCTCTGTCTGAAACGAAATCGGATTCTTGAGGTGACTTCATTGGACAGTGGGGTTCGGGAGTTCTTCAAAAATCAACTGTCCAGTAACATTTCATCGAGCACTTGGCGGGCACACATGGCTCAACAGGTATTCCATTTGTTTCCTCTTTCACCTTCATTTGGATTTTCCCTCTGAATGCCTTTTTCTGATGGGTCTCCTCTGGATTCTTCATGTGGGTCTTGCTCTTGTCTCTGTTTTATTGCTATTATTTCTCTGATGTTTTGGTGGGTCGCTCTGTCATGGGTCATGGGTTTCTTTTGTGTGTGTGTACGCCCTTTCTCTTTTATCGGATTGCTTTTGGTTTTCTGAATTGATTTGTTGTTGATTTGATTGAAGGGAGAGGGCTGGCCTCTTGGTCTACAGCCTCTGAATGTAAGAGTTGGAGTACCTGGAAACCGAGACTATTCAGGATCAGTGTCTTTCAATACCTTGATGACGGCTTCTTCTGTTTCACTCACTGATTCTTCATCCGACTTGGACACTGAGGTCAGTGTATTTTTCTTTTTTCACTTACATTTTTGAAAGGTTAAAGTCTTGTTGATGTGATTTTGGAATGAGATTATCAGAACTTCACATGACGTTAAGGGAATGTTATAGGTTAGTTTTTGTTCTTTGTGCTTGTACCTTTTAATGCACTCAGTATTGAACTATTTAGAGTAATGTAGATGGAGAAACCCCCCATTTTGCCAGTGTTTTATTGGCAACCAAGTGATTGTCAATCTTTTAATTGCCTTTTTAGTTCATTAAGCCCAATTTTTGTGATGTATACTCTTAGTGTCTGCATGTTACTGTGGTGCCATAATGCTAATATGATCGATCCATCGTCATTTATGACCCGAATCAAAAGTTTGTGGTGCGACGTTTTAAAGTGAGAAAAATTGAGGTATATGGTAGTAGTAGGGGTATCCCATTTGTCATGAAATCTAGTGTCCTTAACTCGTCGTTTCTATCTCGGATTTCGACCGAGACTATTGGAAGAGGATGATTGATTGTATAGTTTCATCTTATTGCAGTATGAATTAGACATAAGCTTTTGATTTTACTAGTAGTTAGAGGAAAGAGAGACAGTAGACACTTGTAATCTTTGGGACTTGGCTCAGATTTTTGCCATTCCATCTTGTAGATAAGTAATGCTTATGAATGATTGATGCTGAAGATTTCATCTCAGAACAGCTGCAGCTCAACAATTTTTAAAAATAAAGCTAAAATCAGATAGCCACAGTCTCATGACTCGTGACAATCGATCTTACTTCGTCATGCCGTGCGTTAATATTGCAGTCGACAGGATCTTTCTTCCATGACAAGAGCATAACACTCGGGAGTCTCATAGGAGTTTCCAACATCTTGGAACTCTCAAGAAGATCAATCAGGGGAAGAAGAACAGAGAGCACAAATGACAAGAGGAGCAATACCAGGTCTAGAACATGGCTTTTCTCTTTGTGTTCGAGGGACAGTACCGATGCAGATAGCGTCAACAACGGCCCGTCGTTAGGCCACTTCTTGGCAGAAGAAAGAAGAGCAGCCGACGAAAATAGGAGAAATCAGGGTCTAATCATGTATGGACCAGAAGAAATAGAATTAGCAGAATCTGCTCCAGAACCAAACTCCTTGTTCATCAATGGCTGTGTGGCACCTCCTCAATCAAGCCTGGGTTCAGATGCTGAAAGTGGGAGAAATGGAGGAACTGAGCCTGCAAATGACAATAGAGTTGCAATGCTTTGTGCTTGTGTTTGTGGACACTGAACCTTAGTTTTTTTTTTTTTTTTTTTTTTTCTTTCCTTTCTTTGTTTCATGATATTGATTGAATTTCTTGCTTTTTGAAACAAATAAAGATATCAATTTACAGTGACCCTTTCTTTCTTTTTTACTTCATTTTCATGTGGAATTCATTAAGCTTTCATCTGCTTTTTGTGTCATTTTCTCCTTTAACTAGCTTTCATTTTGTTTGTCTCATCATTTGAAGGGTATAGATTTTCCTTTGAGTTTTCTGTGTGCATAGCATTTTTTGGCCTATGTTCCCATATTTGAAGGGTTTATATATATATATATAT ATGGCTCAACAGGGAGAGGGCTGGCCTCTTGGTCTACAGCCTCTGAATGTAAGAGTTGGAGTACCTGGAAACCGAGACTATTCAGGATCAGTGTCTTTCAATACCTTGATGACGGCTTCTTCTGTTTCACTCACTGATTCTTCATCCGACTTGGACACTGAGTCGACAGGATCTTTCTTCCATGACAAGAGCATAACACTCGGGAGTCTCATAGGAGTTTCCAACATCTTGGAACTCTCAAGAAGATCAATCAGGGGAAGAAGAACAGAGAGCACAAATGACAAGAGGAGCAATACCAGGTCTAGAACATGGCTTTTCTCTTTGTGTTCGAGGGACAGTACCGATGCAGATAGCGTCAACAACGGCCCGTCGTTAGGCCACTTCTTGGCAGAAGAAAGAAGAGCAGCCGACGAAAATAGGAGAAATCAGGGTCTAATCATGTATGGACCAGAAGAAATAGAATTAGCAGAATCTGCTCCAGAACCAAACTCCTTGTTCATCAATGGCTGTGTGGCACCTCCTCAATCAAGCCTGGGTTCAGATGCTGAAAGTGGGAGAAATGGAGGAACTGAGCCTGCAAATGACAATAGAGTTGCAATGCTTTGTGCTTGTGTTTGTGGACACTGA ATGGCTCAACAGGGAGAGGGCTGGCCTCTTGGTCTACAGCCTCTGAATGTAAGAGTTGGAGTACCTGGAAACCGAGACTATTCAGGATCAGTGTCTTTCAATACCTTGATGACGGCTTCTTCTGTTTCACTCACTGATTCTTCATCCGACTTGGACACTGAGTCGACAGGATCTTTCTTCCATGACAAGAGCATAACACTCGGGAGTCTCATAGGAGTTTCCAACATCTTGGAACTCTCAAGAAGATCAATCAGGGGAAGAAGAACAGAGAGCACAAATGACAAGAGGAGCAATACCAGGTCTAGAACATGGCTTTTCTCTTTGTGTTCGAGGGACAGTACCGATGCAGATAGCGTCAACAACGGCCCGTCGTTAGGCCACTTCTTGGCAGAAGAAAGAAGAGCAGCCGACGAAAATAGGAGAAATCAGGGTCTAATCATGTATGGACCAGAAGAAATAGAATTAGCAGAATCTGCTCCAGAACCAAACTCCTTGTTCATCAATGGCTGTGTGGCACCTCCTCAATCAAGCCTGGGTTCAGATGCTGAAAGTGGGAGAAATGGAGGAACTGAGCCTGCAAATGACAATAGAGTTGCAATGCTTTGTGCTTGTGTTTGTGGACACTGA MAQQGEGWPLGLQPLNVRVGVPGNRDYSGSVSFNTLMTASSVSLTDSSSDLDTESTGSFFHDKSITLGSLIGVSNILELSRRSIRGRRTESTNDKRSNTRSRTWLFSLCSRDSTDADSVNNGPSLGHFLAEERRAADENRRNQGLIMYGPEEIELAESAPEPNSLFINGCVAPPQSSLGSDAESGRNGGTEPANDNRVAMLCACVCGH Homology
BLAST of Spg001520 vs. NCBI nr
Match: XP_038902041.1 (uncharacterized protein At3g17950-like isoform X2 [Benincasa hispida]) HSP 1 Score: 370.5 bits (950), Expect = 9.2e-99 Identity = 181/208 (87.02%), Postives = 199/208 (95.67%), Query Frame = 0
BLAST of Spg001520 vs. NCBI nr
Match: XP_038902040.1 (uncharacterized protein At3g17950-like isoform X1 [Benincasa hispida]) HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96 Identity = 177/204 (86.76%), Postives = 195/204 (95.59%), Query Frame = 0
BLAST of Spg001520 vs. NCBI nr
Match: XP_023532304.1 (uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 360.5 bits (924), Expect = 9.5e-96 Identity = 179/208 (86.06%), Postives = 195/208 (93.75%), Query Frame = 0
BLAST of Spg001520 vs. NCBI nr
Match: KAG6605464.1 (hypothetical protein SDJN03_02781, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035409.1 hypothetical protein SDJN02_02205 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 356.3 bits (913), Expect = 1.8e-94 Identity = 179/209 (85.65%), Postives = 196/209 (93.78%), Query Frame = 0
BLAST of Spg001520 vs. NCBI nr
Match: XP_023006892.1 (uncharacterized protein At3g17950-like [Cucurbita maxima]) HSP 1 Score: 354.8 bits (909), Expect = 5.2e-94 Identity = 177/208 (85.10%), Postives = 194/208 (93.27%), Query Frame = 0
BLAST of Spg001520 vs. ExPASy Swiss-Prot
Match: Q6DR24 (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.5e-08 Identity = 63/182 (34.62%), Postives = 83/182 (45.60%), Query Frame = 0
BLAST of Spg001520 vs. ExPASy TrEMBL
Match: A0A6J1KX21 (uncharacterized protein At3g17950-like OS=Cucurbita maxima OX=3661 GN=LOC111499548 PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 2.5e-94 Identity = 177/208 (85.10%), Postives = 194/208 (93.27%), Query Frame = 0
BLAST of Spg001520 vs. ExPASy TrEMBL
Match: A0A6J1G630 (uncharacterized protein At3g17950-like OS=Cucurbita moschata OX=3662 GN=LOC111451215 PE=4 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 3.3e-94 Identity = 178/209 (85.17%), Postives = 195/209 (93.30%), Query Frame = 0
BLAST of Spg001520 vs. ExPASy TrEMBL
Match: A0A0A0KCA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190490 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92 Identity = 175/209 (83.73%), Postives = 191/209 (91.39%), Query Frame = 0
BLAST of Spg001520 vs. ExPASy TrEMBL
Match: A0A6J1JI06 (uncharacterized protein At3g17950-like OS=Cucurbita maxima OX=3661 GN=LOC111484531 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 4.0e-92 Identity = 178/208 (85.58%), Postives = 188/208 (90.38%), Query Frame = 0
BLAST of Spg001520 vs. ExPASy TrEMBL
Match: A0A6J1FU26 (uncharacterized protein At3g17950-like OS=Cucurbita moschata OX=3662 GN=LOC111448789 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 4.0e-92 Identity = 178/208 (85.58%), Postives = 188/208 (90.38%), Query Frame = 0
BLAST of Spg001520 vs. TAIR 10
Match: AT5G02440.1 (unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24 Identity = 75/170 (44.12%), Postives = 100/170 (58.82%), Query Frame = 0
BLAST of Spg001520 vs. TAIR 10
Match: AT3G17950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.1 bits (144), Expect = 2.5e-09 Identity = 63/182 (34.62%), Postives = 83/182 (45.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|