Spg000601 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000601
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTropomyosin
Locationscaffold8: 44283273 .. 44283584 (+)
RNA-Seq ExpressionSpg000601
SyntenySpg000601
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCAAAGCTTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCGCCGTGGTGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAAGCAGCGCAGCTGCCGTGGCTGCTGTTGCTGTCACGGCGGTGACTGTCGATGCCTTTGAAGATGATGGTGGCAGCACGCATGGCCACGGCGGTGAGGGAGGCGGTGGAGGTGGCGGAGATTAG

mRNA sequence

ATGGAGTCCTCAAAGCTTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCGCCGTGGTGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAAGCAGCGCAGCTGCCGTGGCTGCTGTTGCTGTCACGGCGGTGACTGTCGATGCCTTTGAAGATGATGGTGGCAGCACGCATGGCCACGGCGGTGAGGGAGGCGGTGGAGGTGGCGGAGATTAG

Coding sequence (CDS)

ATGGAGTCCTCAAAGCTTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCGCCGTGGTGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAAGCAGCGCAGCTGCCGTGGCTGCTGTTGCTGTCACGGCGGTGACTGTCGATGCCTTTGAAGATGATGGTGGCAGCACGCATGGCCACGGCGGTGAGGGAGGCGGTGGAGGTGGCGGAGATTAG

Protein sequence

MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGGD
Homology
BLAST of Spg000601 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 7.7e-30
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query: 3   SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDAS 62
           SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA 
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGS-DSSGNGNSGDAG 492

Query: 63  ASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG 103
           A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Sbjct: 493 AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 531

BLAST of Spg000601 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 7.7e-30
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query: 3   SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDAS 62
           SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA 
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGS-DSSGNGNSGDAG 522

Query: 63  ASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG 103
           A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Sbjct: 523 AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 561

BLAST of Spg000601 vs. NCBI nr
Match: KAG6605437.1 (hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 0

Query: 1   MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGD 60
           MESSK+CFCIPRHKNG KADGGSEKSSKSKPSRRKSRR AKGGKHS SS DSSG+GNTGD
Sbjct: 460 MESSKICFCIPRHKNGLKADGGSEKSSKSKPSRRKSRRAAKGGKHSPSS-DSSGDGNTGD 519

Query: 61  ASASSA-AAVAAVAV----TAVTVDAFEDDGGSTHGHGGEGGGGGGGD 104
           A+ SSA AAVAAVAV    T V VDA EDDGGS+HGHGGEGGGGGGGD
Sbjct: 520 ANESSASAAVAAVAVAAAATVVAVDALEDDGGSSHGHGGEGGGGGGGD 566

BLAST of Spg000601 vs. NCBI nr
Match: KAG7035385.1 (hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 0

Query: 1   MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGD 60
           MESSK+CFCIPRHKNG KADGGSEKSSKSKPSRRKSRR AKGGKHS SS DSSG+GNTGD
Sbjct: 478 MESSKICFCIPRHKNGLKADGGSEKSSKSKPSRRKSRRAAKGGKHSPSS-DSSGDGNTGD 537

Query: 61  ASASSA-AAVAAVAV----TAVTVDAFEDDGGSTHGHGGEGGGGGGGD 104
           A+ SSA AAVAAVAV    T V VDA EDDGGS+HGHGGEGGGGGGGD
Sbjct: 538 ANESSASAAVAAVAVAAAATVVAVDALEDDGGSSHGHGGEGGGGGGGD 584

BLAST of Spg000601 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 6.5e-29
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 0

Query: 1   MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGD 60
           MESSK+CFCIPRHKN HK DGGSEKSSKSKPSRRKS  GAK GKHSSSS DSSGNGNTGD
Sbjct: 57  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSS-DSSGNGNTGD 116

Query: 61  ASAS-SAAAVAAVAVTAVTVDAF-EDDGGSTHGHGGEGGGGGGGD 104
           ASA+ SAAAVAA+AVTAVT+DA  EDDGGSTH HGGEGGGGGGGD
Sbjct: 117 ASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 158

BLAST of Spg000601 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.7e-30
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query: 3   SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDAS 62
           SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA 
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGS-DSSGNGNSGDAG 492

Query: 63  ASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG 103
           A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Sbjct: 493 AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 531

BLAST of Spg000601 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.7e-30
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query: 3   SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDAS 62
           SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA 
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGS-DSSGNGNSGDAG 522

Query: 63  ASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG 103
           A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Sbjct: 523 AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 561

BLAST of Spg000601 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = 0

Query: 3   SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDAS 62
           SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKS R +K GKHSSSS DSSGNGN G+  
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSS-DSSGNGNAGEEC 63

Query: 63  ASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGGD 104
           A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG G GGD
Sbjct: 64  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

BLAST of Spg000601 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 0

Query: 1   MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGD 60
           MES+K+CFCIPRHKNGHKA+GGSEKSSKSKPSRRKSRRG KGGKHSSSS DSSG+GNT  
Sbjct: 1   MESTKICFCIPRHKNGHKANGGSEKSSKSKPSRRKSRRGEKGGKHSSSS-DSSGDGNTNT 60

Query: 61  ASAS---SAAAVAAVAV---TAVTVDAFEDDGGSTHGHGGEGGGGGGGD 104
            +A+   S AAVAAV V   TA T+DA EDDGGS HGHGG GG GGGGD
Sbjct: 61  GAAAGGGSDAAVAAVVVMGTTAATMDAVEDDGGSAHGHGG-GGEGGGGD 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK15390.17.7e-3085.00tropomyosin [Cucumis melo var. makuwa][more]
KAA0061866.17.7e-3085.00tropomyosin [Cucumis melo var. makuwa][more]
KAG6605437.11.7e-2984.26hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035385.11.7e-2984.26hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7010529.16.5e-2986.67hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVK13.7e-3085.00Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE... [more]
A0A5A7V5U93.7e-3085.00Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE... [more]
A0A0A0KFD01.6e-2882.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1[more]
A0A6J1D5156.1e-2577.06circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000601.1Spg000601.1mRNA