Spg000010 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000010
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Arp2/3 complex 34 kDa subunit
Location	scaffold1: 115693 .. 118513 (+)
RNA-Seq Expression	Spg000010
Synteny	Spg000010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCGCTTCAATTCGTATTCCAAGCCTCTTTTCCAATTTCTTAGAATTAGATTTTGCGAATGTTCCGGATCATTTGGGAGACGTTTGGGTTTAGCCTCTAATAATCACTGACCGAGATGGTACAATCAGATTGTCTTCTTCGAAGGATTCCTTGGTGTGGTTGCCTAAATTCAGGCCGATTGCACAAATTAAGTACGAGAAAACTAATTGTTCAAAAATAAGAGAGATTCATCTCATTGAAGGTGAACTAAGTGACAAGCTAATGGGAAAAAAATTCACATTGGAGTAGGGCCAAATCAGAGATTCAAAATGCTAGGAGACTTGATTGGTTTTCATAATCTCAATTGCTTGATTGAAAAATAAATTTAAAACGTCATCTTCTCTTTAGGAATCGATCATGCACTGTTACTGTATTGATTAATTTACAAAATAATTGTATTCATCATGTACAAACACCACAGAAGGAAACCGACAGAGAAAATATTTCACAAGGAACATAAATTGCAGGGGAGACAGAATGAAGTAATAAGAAAGAGAAAAATACAGGAAGATATTTAAAGTTATAATAAGAAAAGAAGCAAAAAATAAGTTTGTTCCTAGAACTTCTTCTTTTTTCCATCCATCAATGAAAAGTTTGTTTCTTGGATTTATATCATTGGTCTCGATGGGTTAAAAACTAGTGGGCTGAGAATGGGGTTTCACAATCCTTCATCTTCCCTTTTTAGCAATATAGTTTCTATAATTTCTTCTTTAACATTCACGGGATGATATTTGCTAGGAGCGACATTCTATATATATTGACAAGATGTCAATTAACTCAATGCCCCTTCTTGCACATTCCCTAATCACTCCCAAGGGACCTAATTTCCTCTCATGACAACACGATTTCTCATGTTTCCATATTCAAACGATCTTAAAATGTCCACAAGTTGCTTCAGGGAAAAAAAGAAAAAAAGAATTCTACTGGAGACCGAGATCGAACTCTGATACTAAATGATGTAATTTAATTGACCAGAATGGCTAATATTTTTTTTTTGTGTTGACTATAGTCTTGAAAAAGCAGTGGAAGTGGATTACAACTGGGTGGAATTTGATGATGTGCGTTACCATGTCCAGGTGATTTTTTCTTATTTTATTTTCATCATTTCGAAGCAGATTGAATTTTGTTGTGATGTCTATGATTGATCTGAATTATTTTGCAGGTCTCAATGAAGAACACCCATCTCTTCCTGCTATCCGTATCATTGCCCATCCCTTCTGCAGATACTGTTTTTTGTGGTGGGCTTCCATCTGGAGCTATAGAAGCTATTAAAGCTGCATATGGCGTGCTTGTACAGATTCTTGATCCTCCAAGAGATGGTTTTAATCTCACATTAAAATTGAATCTTTCGAAACTTCCTCTTGATGAAGGTTCATCGAGTTTTCCTTTTAAGATCATTATAAATTATAAATTGTTATGGATATTGCAGAAAAAAGGGTTATTGTTTTATTTTTTCAATCTCTCTTCATGTTATCTGTATCTTTGTTTACGCTTCCTAGCACTTGGTGCCCTACTGCCTTTGCATACAATATACTAGTTTGGGAAGTTAATATCTAGGAATTTTCCTTGAGCCCCATTGAGAAGAATCCAGGGTAGGAACATGCTAGAGTATTAGCAGGGAAATATTAGAGATGCTGTTGAATCTGCAATGATGAATGCAAGAATTTGCACTAGATGAAGCTACTGTATCAATATTATTTGTTAAACTCATTTACGAGCAATTTGCAACCTAGATAAGCTTAATTTTGATGGTTTATGGAGCTAGAAGGTACATTAGAGCATATTCTTTTGTGGAATACTTTACTTTTGATTCTTCTTTTTGTTGTCAGCTTTTTGTGTTTGAACTTAACAGTTGACGCTTTCTTTGACTAATTTCTTGCAGATAATAGGCACGCTATTTTGGTAAAAGTTGCATCTATTAGGGAAGTGGTTCTTGGTGCTCCATTAAGAGTAATTCTTAAACAACTCGGGTCAAGGGTTGTTGCTTCCGACGTCAATAGGCTTGTTGCAATGGTACATTGTCCAAAAGAGTCATTTTTTCTTGTCCGTCAGGTAGAAGGATTATTTTGCTCTTGCGTTTTTTATTTGGGACAATATTCACTGTTGTTTTCTAAAGCTTGAGGTGGAATAATCCTCAGCCGTTAAAATGTAAGATGCAAAAATAAGAGCAGGCTCTAGTAATGTGAGGCAAGGTGCACAACCTAAAATAATAATACAAATTTAATATATGAAAAGTTTAGTTTAATATGTCGAAGGATGCTCTCCCCTCTCTCCTCCTTCCTCCCACTCCCAACCTTCATTCCCTATCCTTCAACCGCTTCTTCGAATTCTTTTTCTAAGCTGGGTATTTTCTCCTTGGTTGGTTCCTTTTGGCTTTTGTTTTGTGTTAGTCTTTGAGACAGATGGAAAGCAATTGTAGTTCTTATGCTCATGGAAATTATCTTCTGGAAGAAAGGAAAAGGTGTCGTTCTTATTTCGTCAAACTTCATTGGTATGTTTTATTATCTTTTGGTTTTGGCTGGGTTTCAGAAAAGAGGGTAGAGGTTCTTATGGGAAATGTTTAATGAATTTCTTTAGCAACCTAAAAGTAAACTTGATATTTGTATGCCTAAGGTAAGGGTTTATGAAGCTTCTTCCGTCATAAAGGATTTGGGGGCTCCTCCATCTTTACCTAAGCAAGACTCTTTACCTCATCCAAGTTTTATTGGTGATGAAATTTCTTCAAAAAATTTCTGGATTAGAAAAGAAAAGGAGGTGGCAAAGCTTTGCCCAAATTAA

mRNA sequence

ATGTGTCGCTTCAATTCTCTTGAAAAAGCAGTGGAAGTGGATTACAACTGGGTGGAATTTGATGATGTGCGTTACCATGTCCAGGTCTCAATGAAGAACACCCATCTCTTCCTGCTATCCGTATCATTGCCCATCCCTTCTGCAGATACTGTTTTTTGTGGTGGGCTTCCATCTGGAGCTATAGAAGCTATTAAAGCTGCATATGGCGTGCTTGTACAGATTCTTGATCCTCCAAGAGATGGTTTTAATCTCACATTAAAATTGAATCTTTCGAAACTTCCTCTTGATGAAGATAATAGGCACGCTATTTTGGTAAAAGTTGCATCTATTAGGGAAGTGGTTCTTGGTGCTCCATTAAGAGTAATTCTTAAACAACTCGGGTCAAGGGTTGTTGCTTCCGACGTCAATAGGCTTGTTGCAATGGTACATTGTCCAAAAGAGTCATTTTTTCTTGTCCGTCAGTCTTTGAGACAGATGGAAAGCAATTGTAGTTCTTATGCTCATGGAAATTATCTTCTGGAAGAAAGGAAAAGGTGTCGTTCTTATTTCGTCAAACTTCATTGTAAACTTGATATTTGTATGCCTAAGGTAAGGGTTTATGAAGCTTCTTCCGTCATAAAGGATTTGGGGGCTCCTCCATCTTTACCTAAGCAAGACTCTTTACCTCATCCAAGTTTTATTGGTGATGAAATTTCTTCAAAAAATTTCTGGATTAGAAAAGAAAAGGAGGTGGCAAAGCTTTGCCCAAATTAA

Coding sequence (CDS)

ATGTGTCGCTTCAATTCTCTTGAAAAAGCAGTGGAAGTGGATTACAACTGGGTGGAATTTGATGATGTGCGTTACCATGTCCAGGTCTCAATGAAGAACACCCATCTCTTCCTGCTATCCGTATCATTGCCCATCCCTTCTGCAGATACTGTTTTTTGTGGTGGGCTTCCATCTGGAGCTATAGAAGCTATTAAAGCTGCATATGGCGTGCTTGTACAGATTCTTGATCCTCCAAGAGATGGTTTTAATCTCACATTAAAATTGAATCTTTCGAAACTTCCTCTTGATGAAGATAATAGGCACGCTATTTTGGTAAAAGTTGCATCTATTAGGGAAGTGGTTCTTGGTGCTCCATTAAGAGTAATTCTTAAACAACTCGGGTCAAGGGTTGTTGCTTCCGACGTCAATAGGCTTGTTGCAATGGTACATTGTCCAAAAGAGTCATTTTTTCTTGTCCGTCAGTCTTTGAGACAGATGGAAAGCAATTGTAGTTCTTATGCTCATGGAAATTATCTTCTGGAAGAAAGGAAAAGGTGTCGTTCTTATTTCGTCAAACTTCATTGTAAACTTGATATTTGTATGCCTAAGGTAAGGGTTTATGAAGCTTCTTCCGTCATAAAGGATTTGGGGGCTCCTCCATCTTTACCTAAGCAAGACTCTTTACCTCATCCAAGTTTTATTGGTGATGAAATTTCTTCAAAAAATTTCTGGATTAGAAAAGAAAAGGAGGTGGCAAAGCTTTGCCCAAATTAA

Protein sequence

MCRFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVILKQLGSRVVASDVNRLVAMVHCPKESFFLVRQSLRQMESNCSSYAHGNYLLEERKRCRSYFVKLHCKLDICMPKVRVYEASSVIKDLGAPPSLPKQDSLPHPSFIGDEISSKNFWIRKEKEVAKLCPN

Homology

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BLAST of Spg000010 vs. NCBI nr
Match: XP_004134509.1 (actin-related protein 2/3 complex subunit 2A [Cucumis sativus] >KGN49550.1 hypothetical protein Csa_003141 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-70
Identity = 141/153 (92.16%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 3   RFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIE 62
           R ++LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIE
Sbjct: 18  RVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIE 77

Query: 63  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVI 122
           AIKAAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRH ILVKVASIREVVLGAPLR I
Sbjct: 78  AIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTILVKVASIREVVLGAPLRGI 137

Query: 123 LKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LKQLGSRVVASDVN+LVA+VH PKESFFLV Q+
Sbjct: 138 LKQLGSRVVASDVNKLVALVHRPKESFFLVPQA 170

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BLAST of Spg000010 vs. NCBI nr
Match: XP_008439412.1 (PREDICTED: actin-related protein 2/3 complex subunit 2A [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.2e-70
Identity = 139/155 (89.68%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MCRFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGA 60
           + R ++LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGA
Sbjct: 16  LSRVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGA 75

Query: 61  IEAIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLR 120
           IEAIKAAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRH +LVK+ASIREVVLGAPLR
Sbjct: 76  IEAIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTVLVKLASIREVVLGAPLR 135

Query: 121 VILKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
            ILKQLGSRVVASDVN+LVA+VH PKESFFLV Q+
Sbjct: 136 GILKQLGSRVVASDVNKLVALVHRPKESFFLVPQA 170

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BLAST of Spg000010 vs. NCBI nr
Match: XP_022990855.1 (actin-related protein 2/3 complex subunit 2A [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 3.7e-70
Identity = 140/153 (91.50%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 3   RFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIE 62
           R  +LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIE
Sbjct: 18  RVQNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIE 77

Query: 63  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVI 122
           AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLP DEDNRHA LVKVASIREVVLGAPLRVI
Sbjct: 78  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPHDEDNRHATLVKVASIREVVLGAPLRVI 137

Query: 123 LKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LKQLGSR++ SDVNRLVA+VH PKESFFLV Q+
Sbjct: 138 LKQLGSRIIGSDVNRLVALVHRPKESFFLVPQA 170

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BLAST of Spg000010 vs. NCBI nr
Match: KAA0052409.1 (actin-related protein 2/3 complex subunit 2A [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 6.3e-70
Identity = 139/150 (92.67%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 6   SLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIK 65
           SLEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIK
Sbjct: 68  SLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIEAIK 127

Query: 66  AAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVILKQ 125
           AAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRH +LVK+ASIREVVLGAPLR ILKQ
Sbjct: 128 AAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTVLVKLASIREVVLGAPLRGILKQ 187

Query: 126 LGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LGSRVVASDVN+LVA+VH PKESFFLV Q+
Sbjct: 188 LGSRVVASDVNKLVALVHRPKESFFLVPQA 217

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BLAST of Spg000010 vs. NCBI nr
Match: XP_038877487.1 (actin-related protein 2/3 complex subunit 2A isoform X2 [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 6.3e-70
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 3   RFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIE 62
           R ++LEK VEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSAD VFCGGLPSGAIE
Sbjct: 18  RVHNLEKVVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADNVFCGGLPSGAIE 77

Query: 63  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVI 122
           AIKAAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRHA+LVKVASIREVVLGAPLR I
Sbjct: 78  AIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAVLVKVASIREVVLGAPLRGI 137

Query: 123 LKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LKQLGSRVVASDVNR+VA+VH PKESFFLV Q+
Sbjct: 138 LKQLGSRVVASDVNRVVALVHRPKESFFLVPQA 170

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BLAST of Spg000010 vs. ExPASy Swiss-Prot
Match: Q8LGI3 (Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana OX=3702 GN=ARPC2A PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-46
Identity = 96/155 (61.94%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MCRFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGA 60
           + R  +L+KAVE+DY W+EFDDVRYHVQV+MKN +L LLSVSLP P  + +   GLP GA
Sbjct: 16  LTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPEAMSFDGLPLGA 75

Query: 61  IEAIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLR 120
           IEAIK  YG   QILDPPRDGF+LTLKLN SK+  DE+    +L K+ASIREVV+GAPL+
Sbjct: 76  IEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE----LLTKLASIREVVMGAPLK 135

Query: 121 VILKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           +I K L SR VA +++RLVA++H P E+FFLV Q+
Sbjct: 136 IIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQA 166

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BLAST of Spg000010 vs. ExPASy Swiss-Prot
Match: F4IVU1 (Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana OX=3702 GN=ARPC2B PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.6e-13
Identity = 42/148 (28.38%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 8   EKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAA 67
           EK +EVD ++ EF  + YH++ S+ + ++  +S S  + +   V    + S   E IK  
Sbjct: 22  EKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLETQGAVTLKEISSYTYEVIKNI 81

Query: 68  YGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVILKQLG 127
              ++ I+DPPR GF LTL LNL  +P  ++    I+ +++ ++ ++L + L+ +L+ L 
Sbjct: 82  GVGVIDIVDPPRLGFQLTLGLNLDNIPRGKE-AIKIITRISELQAIILSSQLKEMLRSLN 141

Query: 128 SRVVASDVNRL-VAMVHCPKESFFLVRQ 155
            +  +  +N + + +V+ P E F++ +Q
Sbjct: 142 FQDDSRSINNMPIRIVYHPSEPFYVFKQ 168

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BLAST of Spg000010 vs. ExPASy TrEMBL
Match: A0A0A0KIL8 (Arp2/3 complex 34 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_6G538790 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 6.2e-71
Identity = 141/153 (92.16%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 3   RFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIE 62
           R ++LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIE
Sbjct: 18  RVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIE 77

Query: 63  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVI 122
           AIKAAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRH ILVKVASIREVVLGAPLR I
Sbjct: 78  AIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTILVKVASIREVVLGAPLRGI 137

Query: 123 LKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LKQLGSRVVASDVN+LVA+VH PKESFFLV Q+
Sbjct: 138 LKQLGSRVVASDVNKLVALVHRPKESFFLVPQA 170

[Close]

BLAST of Spg000010 vs. ExPASy TrEMBL
Match: A0A1S3AYP0 (Arp2/3 complex 34 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103484228 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.1e-70
Identity = 139/155 (89.68%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MCRFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGA 60
           + R ++LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGA
Sbjct: 16  LSRVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGA 75

Query: 61  IEAIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLR 120
           IEAIKAAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRH +LVK+ASIREVVLGAPLR
Sbjct: 76  IEAIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTVLVKLASIREVVLGAPLR 135

Query: 121 VILKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
            ILKQLGSRVVASDVN+LVA+VH PKESFFLV Q+
Sbjct: 136 GILKQLGSRVVASDVNKLVALVHRPKESFFLVPQA 170

[Close]

BLAST of Spg000010 vs. ExPASy TrEMBL
Match: A0A6J1JR90 (Arp2/3 complex 34 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111487620 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.8e-70
Identity = 140/153 (91.50%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 3   RFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIE 62
           R  +LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIE
Sbjct: 18  RVQNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIE 77

Query: 63  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVI 122
           AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLP DEDNRHA LVKVASIREVVLGAPLRVI
Sbjct: 78  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPHDEDNRHATLVKVASIREVVLGAPLRVI 137

Query: 123 LKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LKQLGSR++ SDVNRLVA+VH PKESFFLV Q+
Sbjct: 138 LKQLGSRIIGSDVNRLVALVHRPKESFFLVPQA 170

[Close]

BLAST of Spg000010 vs. ExPASy TrEMBL
Match: A0A5A7UG04 (Arp2/3 complex 34 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00040 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.1e-70
Identity = 139/150 (92.67%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 6   SLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIK 65
           SLEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIK
Sbjct: 68  SLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIEAIK 127

Query: 66  AAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVILKQ 125
           AAYG+LVQILDPPRDGFNLTLKLNLSKLPLDEDNRH +LVK+ASIREVVLGAPLR ILKQ
Sbjct: 128 AAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTVLVKLASIREVVLGAPLRGILKQ 187

Query: 126 LGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LGSRVVASDVN+LVA+VH PKESFFLV Q+
Sbjct: 188 LGSRVVASDVNKLVALVHRPKESFFLVPQA 217

[Close]

BLAST of Spg000010 vs. ExPASy TrEMBL
Match: A0A6J1HA86 (Arp2/3 complex 34 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111462028 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 5.2e-70
Identity = 139/153 (90.85%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 3   RFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIE 62
           R  +LEKAVEVDYNWVEFDDVRYHVQVSMKN HLFLLSVSLPIPSADTVFCGGLPSGAIE
Sbjct: 18  RVQNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPIPSADTVFCGGLPSGAIE 77

Query: 63  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVI 122
           AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLP DEDNRH  LVKVASIREVVLGAPLRVI
Sbjct: 78  AIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPHDEDNRHTTLVKVASIREVVLGAPLRVI 137

Query: 123 LKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           LKQLGSR++ SDVNRLVA+VH PKESFFLV Q+
Sbjct: 138 LKQLGSRIIGSDVNRLVALVHRPKESFFLVPQA 170

[Close]

BLAST of Spg000010 vs. TAIR 10
Match: AT1G30825.1 (Arp2/3 complex, 34 kD subunit p34-Arc )

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-47
Identity = 96/155 (61.94%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MCRFNSLEKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGA 60
           + R  +L+KAVE+DY W+EFDDVRYHVQV+MKN +L LLSVSLP P  + +   GLP GA
Sbjct: 16  LTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPEAMSFDGLPLGA 75

Query: 61  IEAIKAAYGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLR 120
           IEAIK  YG   QILDPPRDGF+LTLKLN SK+  DE+    +L K+ASIREVV+GAPL+
Sbjct: 76  IEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE----LLTKLASIREVVMGAPLK 135

Query: 121 VILKQLGSRVVASDVNRLVAMVHCPKESFFLVRQS 156
           +I K L SR VA +++RLVA++H P E+FFLV Q+
Sbjct: 136 IIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQA 166

[Close]

BLAST of Spg000010 vs. TAIR 10
Match: AT2G33385.1 (actin-related protein C2B )

HSP 1 Score: 75.5 bits (184), Expect = 6.8e-14
Identity = 42/148 (28.38%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 8   EKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAA 67
           EK +EVD ++ EF  + YH++ S+ + ++  +S S  + +   V    + S   E IK  
Sbjct: 22  EKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLETQGAVTLKEISSYTYEVIKNI 81

Query: 68  YGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVILKQLG 127
              ++ I+DPPR GF LTL LNL  +P  ++    I+ +++ ++ ++L + L+ +L+ L 
Sbjct: 82  GVGVIDIVDPPRLGFQLTLGLNLDNIPRGKE-AIKIITRISELQAIILSSQLKEMLRSLN 141

Query: 128 SRVVASDVNRL-VAMVHCPKESFFLVRQ 155
            +  +  +N + + +V+ P E F++ +Q
Sbjct: 142 FQDDSRSINNMPIRIVYHPSEPFYVFKQ 168

[Close]

BLAST of Spg000010 vs. TAIR 10
Match: AT2G33385.2 (actin-related protein C2B )

HSP 1 Score: 75.5 bits (184), Expect = 6.8e-14
Identity = 42/148 (28.38%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 8   EKAVEVDYNWVEFDDVRYHVQVSMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAA 67
           EK +EVD ++ EF  + YH++ S+ + ++  +S S  + +   V    + S   E IK  
Sbjct: 22  EKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLETQGAVTLKEISSYTYEVIKNI 81

Query: 68  YGVLVQILDPPRDGFNLTLKLNLSKLPLDEDNRHAILVKVASIREVVLGAPLRVILKQLG 127
              ++ I+DPPR GF LTL LNL  +P  ++    I+ +++ ++ ++L + L+ +L+ L 
Sbjct: 82  GVGVIDIVDPPRLGFQLTLGLNLDNIPRGKE-AIKIITRISELQAIILSSQLKEMLRSLN 141

Query: 128 SRVVASDVNRL-VAMVHCPKESFFLVRQ 155
            +  +  +N + + +V+ P E F++ +Q
Sbjct: 142 FQDDSRSINNMPIRIVYHPSEPFYVFKQ 168

The following BLAST results are available for this feature:

BLAST of Spg000010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134509.1	1.3e-70	92.16	actin-related protein 2/3 complex subunit 2A [Cucumis sativus] >KGN49550.1 hypot...	[more]
XP_008439412.1	2.2e-70	89.68	PREDICTED: actin-related protein 2/3 complex subunit 2A [Cucumis melo]	[more]
XP_022990855.1	3.7e-70	91.50	actin-related protein 2/3 complex subunit 2A [Cucurbita maxima]	[more]
KAA0052409.1	6.3e-70	92.67	actin-related protein 2/3 complex subunit 2A [Cucumis melo var. makuwa]	[more]
XP_038877487.1	6.3e-70	90.85	actin-related protein 2/3 complex subunit 2A isoform X2 [Benincasa hispida]	[more]

BLAST of Spg000010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGI3	2.3e-46	61.94	Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4IVU1	9.6e-13	28.38	Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Spg000010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIL8	6.2e-71	92.16	Arp2/3 complex 34 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_6G538790 PE=3 SV...	[more]
A0A1S3AYP0	1.1e-70	89.68	Arp2/3 complex 34 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103484228 PE=3 SV=1	[more]
A0A6J1JR90	1.8e-70	91.50	Arp2/3 complex 34 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111487620 PE=3 S...	[more]
A0A5A7UG04	3.1e-70	92.67	Arp2/3 complex 34 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A6J1HA86	5.2e-70	90.85	Arp2/3 complex 34 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111462028 PE=3...	[more]

BLAST of Spg000010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30825.1	1.6e-47	61.94	Arp2/3 complex, 34 kD subunit p34-Arc	[more]
AT2G33385.1	6.8e-14	28.38	actin-related protein C2B	[more]
AT2G33385.2	6.8e-14	28.38	actin-related protein C2B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034666	Arp2/3 complex subunit 2/4	GENE3D	3.30.1460.20		coord: 2..124 e-value: 3.2E-24 score: 87.6
IPR034666	Arp2/3 complex subunit 2/4	SUPERFAMILY	69645	Arp2/3 complex subunits	coord: 5..114
IPR007188	Actin-related protein 2/3 complex subunit 2	PFAM	PF04045	P34-Arc	coord: 59..150 e-value: 1.2E-4 score: 21.8
IPR007188	Actin-related protein 2/3 complex subunit 2	PANTHER	PTHR12058	ARP2/3 COMPLEX 34 KDA SUBUNIT	coord: 3..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000010.1	Spg000010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0030041	actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0005200	structural constituent of cytoskeleton