Sgr024117 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr024117
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	tig00001047: 3354060 .. 3354632 (-)
RNA-Seq Expression	Sgr024117
Synteny	Sgr024117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACACTCTCCACACTCACCCTCCGCTCCTCATCTTACCTTTCTCACTCTTATCCCTCTTTTTCTACGCATTCCTCCAAATCCACCGTCCAATTCCCATTCTACCCTTCTTCCACCGGCATCTCCCACCGCGTCACCCACCTCCGCCCCATCGCCGCCGTCTCGGCCCCTGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAACCTCACCCTCGAAGAAGCCCGACTTCTGGTCGACTTCCTCCAGGACAAGCTCGGGGTGTCTGCCGCCGCCTTCGCTCCCGCGGCCGTCGTGGCAGCGCCTGGTGCCGCCGCAGGCGGGGATGCAGCCGCCGAAGCGGTGGAGGAGAAGACGGAATTCGATGTGGTTATTGAGGACGTACCAAGCAATGCCAGAATCGCAGTGATTAAGACAGTGAGGGGATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTTATCGAAGGTTTGCCGAAGAAGTTCAAGGAAGGGGTTTCCAAAGAAGAGGCAGAGGACGCCAAGAAACAGCTTGAAGAAGCTGGAGCCAAAATCGCCATTGTTTAA

mRNA sequence

ATGGCTTCCACACTCTCCACACTCACCCTCCGCTCCTCATCTTACCTTTCTCACTCTTATCCCTCTTTTTCTACGCATTCCTCCAAATCCACCGTCCAATTCCCATTCTACCCTTCTTCCACCGGCATCTCCCACCGCGTCACCCACCTCCGCCCCATCGCCGCCGTCTCGGCCCCTGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAACCTCACCCTCGAAGAAGCCCGACTTCTGGTCGACTTCCTCCAGGACAAGCTCGGGGTGTCTGCCGCCGCCTTCGCTCCCGCGGCCGTCGTGGCAGCGCCTGGTGCCGCCGCAGGCGGGGATGCAGCCGCCGAAGCGGTGGAGGAGAAGACGGAATTCGATGTGGTTATTGAGGACGTACCAAGCAATGCCAGAATCGCAGTGATTAAGACAGTGAGGGGATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTTATCGAAGGTTTGCCGAAGAAGTTCAAGGAAGGGGTTTCCAAAGAAGAGGCAGAGGACGCCAAGAAACAGCTTGAAGAAGCTGGAGCCAAAATCGCCATTGTTTAA

Coding sequence (CDS)

ATGGCTTCCACACTCTCCACACTCACCCTCCGCTCCTCATCTTACCTTTCTCACTCTTATCCCTCTTTTTCTACGCATTCCTCCAAATCCACCGTCCAATTCCCATTCTACCCTTCTTCCACCGGCATCTCCCACCGCGTCACCCACCTCCGCCCCATCGCCGCCGTCTCGGCCCCTGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAACCTCACCCTCGAAGAAGCCCGACTTCTGGTCGACTTCCTCCAGGACAAGCTCGGGGTGTCTGCCGCCGCCTTCGCTCCCGCGGCCGTCGTGGCAGCGCCTGGTGCCGCCGCAGGCGGGGATGCAGCCGCCGAAGCGGTGGAGGAGAAGACGGAATTCGATGTGGTTATTGAGGACGTACCAAGCAATGCCAGAATCGCAGTGATTAAGACAGTGAGGGGATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTTATCGAAGGTTTGCCGAAGAAGTTCAAGGAAGGGGTTTCCAAAGAAGAGGCAGAGGACGCCAAGAAACAGCTTGAAGAAGCTGGAGCCAAAATCGCCATTGTTTAA

Protein sequence

MASTLSTLTLRSSSYLSHSYPSFSTHSSKSTVQFPFYPSSTGISHRVTHLRPIAAVSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of Sgr024117 vs. NCBI nr
Match: XP_022134069.1 (50S ribosomal protein L12, chloroplastic-like [Momordica charantia])

HSP 1 Score: 299.3 bits (765), Expect = 2.4e-77
Identity = 177/191 (92.67%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSKSTVQFPFYPSS-TGISHRVTHLRPIAAVSAP 60
           MASTLSTLTLRS SYLSHS  S STHSSKS VQFPFYPSS   ISHR T LRPIAAVSAP
Sbjct: 1   MASTLSTLTLRSPSYLSHSPRSISTHSSKSAVQFPFYPSSAAAISHRATLLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEE 120
           EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAA  GDAAAEAVEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAGAGDAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 191
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. NCBI nr
Match: XP_038890576.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72
Identity = 166/191 (86.91%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSKS-TVQFPFYPSSTGISHRVTHLRPIAAVSAP 60
           MASTLS LTL S S+LS+S+ S STHS KS T+QFP + SS  +SHR THLRPIAA+SAP
Sbjct: 1   MASTLSILTLHSPSHLSYSHSSLSTHSFKSTTLQFPSHLSSIAVSHRATHLRPIAAISAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEE 120
           EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAA+FAPAAVVAAPG  AGG+AAAEAVEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAASFAPAAVVAAPGGTAGGEAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 191
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. NCBI nr
Match: XP_023536532.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 3.9e-72
Identity = 169/192 (88.02%), Postives = 179/192 (93.23%), Query Frame = 0


Query: 1   MASTLSTL-TLRSSSYLSHSYPSFSTHSS-KSTVQFPFYPSSTGISHRVTHLRPIAAVSA 60
           MASTLSTL TLRS ++LS+S+ SFST SS  +T+QFPF PSST  SHR T+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 191
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. NCBI nr
Match: XP_022960313.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1 50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.0 bits (720), Expect = 3.9e-72
Identity = 170/192 (88.54%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MASTLSTL-TLRSSSYLSHSYPSFSTHSSKS-TVQFPFYPSSTGISHRVTHLRPIAAVSA 60
           MASTLSTL TLRS  +LS+S+ SFST SS S T+QFPF PSST  SHR T+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 191
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. NCBI nr
Match: KAG7033112.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.2 bits (718), Expect = 6.7e-72
Identity = 169/192 (88.02%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MASTLSTL-TLRSSSYLSHSYPSFSTHSS-KSTVQFPFYPSSTGISHRVTHLRPIAAVSA 60
           MASTLSTL TLRS  +LS+S+ SFST SS  +T+QFPF PSST  SHR T+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 191
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-52
Identity = 129/189 (68.25%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSKSTVQFPFYPSSTGISHRVTHLRPIAAVSAPE 60
           MASTLST+TLRS S  + +    S    K T++FP        + R T LRP+AAV APE
Sbjct: 1   MASTLSTITLRSPSPSTATSTHASIPFPKKTLEFPIRTPKLQ-NRRATFLRPLAAVEAPE 60

Query: 61  KIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEEK 120
           K+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPGAAA    A   VEEK
Sbjct: 61  KVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IK VR LTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Sgr024117 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 129/190 (67.89%), Postives = 150/190 (78.95%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSKSTVQFPFYPSSTGISH-RVTHLRPIAAVSAP 60
           MASTLST+TLRS S  + S    S    K  ++FP    +  + H R T LRP+AAV AP
Sbjct: 1   MASTLSTITLRSPSPSTASSTHASIPFPKKALEFPI--RTPKLHHRRATFLRPLAAVEAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEE 120
           EK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAV AAPGAAA    A   VEE
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAVVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVI++VPSNARIA IK VR LTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQ
Sbjct: 121 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQ 180

Query: 181 LEEAGAKIAI 190
           LEEAGAK++I
Sbjct: 181 LEEAGAKVSI 185

[Close]

BLAST of Sgr024117 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 131/194 (67.53%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTH-SSKSTVQFPFYPSSTGI---SHRVTHLRPIAAV 60
           MA+T +  TL   S  SH  P+ ST       +QFPF  ++  I   S R T LRPIAAV
Sbjct: 1   MAATTTMATLNLPSLTSH--PNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  SAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEA 120
            APEKIE+LG+ +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPGA A    AA A
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPA 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDA 180
           VEEKTEFDV I++VPSNARI+VIK VR LTSL LKEAKELIEGLPKK KEGVSK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKIAIV 191
           KKQLE+AGAK++IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]

BLAST of Sgr024117 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-49
Identity = 128/198 (64.65%), Postives = 156/198 (78.79%), Query Frame = 0


Query: 1   MASTLSTL--TLRSSSYLS----HSYPSFSTHSSKSTVQFPFY---PSSTGISHRVTHLR 60
           MAST  ++  T+RSSSY +    + +PS +T     T++FP      SS+ ++HR THLR
Sbjct: 1   MASTTLSIATTIRSSSYPTLASINHFPSRTT-----TIEFPSRFGGGSSSTLTHRATHLR 60

Query: 61  PIAAVSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGD 120
           PIAAV APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G 
Sbjct: 61  PIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGG 120

Query: 121 AAAEAVEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKE 180
           AAA  VEE+TEFDVVI +VPS++RIAVIK VR LTSLALKEAKELIEGLPKKFKEG++K+
Sbjct: 121 AAA-VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKD 180

Query: 181 EAEDAKKQLEEAGAKIAI 190
           EAE+AKK LEEAGAK++I
Sbjct: 181 EAEEAKKTLEEAGAKVSI 190

[Close]

BLAST of Sgr024117 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-48
Identity = 128/194 (65.98%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MASTLSTL--TLRSSSYLSHSYPSFSTH---SSKSTVQFPFYPSSTGISHRVTHLRPIAA 60
           MAST  ++  T+RSSS L+    S STH   S  + ++FPF  SS+  SHR  +LRPI+A
Sbjct: 1   MASTTLSIATTIRSSSPLT----SASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISA 60

Query: 61  VSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAE 120
           V APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G AAA 
Sbjct: 61  VEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAA- 120

Query: 121 AVEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAED 180
            VEE+TEFDVVI +VPS++RIAVIK VR LTSLALKEAKELIEGLPKKFKEG++K+EAE+
Sbjct: 121 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 180

Query: 181 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 181 AKKTLEEAGAKVSI 186

[Close]

BLAST of Sgr024117 vs. ExPASy TrEMBL
Match: A0A6J1BXR2 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006430 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 177/191 (92.67%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSKSTVQFPFYPSS-TGISHRVTHLRPIAAVSAP 60
           MASTLSTLTLRS SYLSHS  S STHSSKS VQFPFYPSS   ISHR T LRPIAAVSAP
Sbjct: 1   MASTLSTLTLRSPSYLSHSPRSISTHSSKSAVQFPFYPSSAAAISHRATLLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEE 120
           EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAA  GDAAAEAVEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAGAGDAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 191
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. ExPASy TrEMBL
Match: A0A6J1H8H9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461079 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.9e-72
Identity = 170/192 (88.54%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MASTLSTL-TLRSSSYLSHSYPSFSTHSSKS-TVQFPFYPSSTGISHRVTHLRPIAAVSA 60
           MASTLSTL TLRS  +LS+S+ SFST SS S T+QFPF PSST  SHR T+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 191
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. ExPASy TrEMBL
Match: A0A6J1JNN0 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486956 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.7e-71
Identity = 168/192 (87.50%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MASTLSTLT-LRSSSYLSHSYPSFSTHSS-KSTVQFPFYPSSTGISHRVTHLRPIAAVSA 60
           MASTLSTLT LRS  +LS+S+ SFST SS  +T+QFPF PSST  SHR T LRPIAAVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPA VVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIK VR LTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 191
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Sgr024117 vs. ExPASy TrEMBL
Match: A0A6J1FMH9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445547 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.0e-69
Identity = 163/190 (85.79%), Postives = 170/190 (89.47%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSKSTVQFPFYPSSTGISHRVTHLRPIAAVSAPE 60
           MASTLSTLTLR+ S LSHS+ SFST SSK T   PF      +SHR T LRPIAAVSAPE
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTT-LPF------LSHRTTRLRPIAAVSAPE 60

Query: 61  KIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEEK 120
           KIEKLGSDISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPG  AGGDAAAEAVEEK
Sbjct: 61  KIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180
           TEFDVVIE+VPSNARIAVIK+VR LT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 191
           EEAGAKI IV
Sbjct: 181 EEAGAKITIV 183

[Close]

BLAST of Sgr024117 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.8e-69
Identity = 162/191 (84.82%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MASTLSTLTLRSSSYLSHSYPSFSTHSSK-STVQFPFYPSSTGISHRVTHLRPIAAVSAP 60
           MASTLSTLTLR+ S LSHS+ SFST SSK +T+ FP        SHR T LRPIAAVSAP
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFP--------SHRATRLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEE 120
           EKIEKLGSDISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPG  AGGD AAEAVEE
Sbjct: 61  EKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VR LT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 191
           LEEAGAKI IV
Sbjct: 181 LEEAGAKITIV 183

[Close]

BLAST of Sgr024117 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 195.7 bits (496), Expect = 3.5e-50
Identity = 128/198 (64.65%), Postives = 156/198 (78.79%), Query Frame = 0


Query: 1   MASTLSTL--TLRSSSYLS----HSYPSFSTHSSKSTVQFPFY---PSSTGISHRVTHLR 60
           MAST  ++  T+RSSSY +    + +PS +T     T++FP      SS+ ++HR THLR
Sbjct: 1   MASTTLSIATTIRSSSYPTLASINHFPSRTT-----TIEFPSRFGGGSSSTLTHRATHLR 60

Query: 61  PIAAVSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGD 120
           PIAAV APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G 
Sbjct: 61  PIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGG 120

Query: 121 AAAEAVEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKE 180
           AAA  VEE+TEFDVVI +VPS++RIAVIK VR LTSLALKEAKELIEGLPKKFKEG++K+
Sbjct: 121 AAA-VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKD 180

Query: 181 EAEDAKKQLEEAGAKIAI 190
           EAE+AKK LEEAGAK++I
Sbjct: 181 EAEEAKKTLEEAGAKVSI 190

[Close]

BLAST of Sgr024117 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-49
Identity = 128/194 (65.98%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MASTLSTL--TLRSSSYLSHSYPSFSTH---SSKSTVQFPFYPSSTGISHRVTHLRPIAA 60
           MAST  ++  T+RSSS L+    S STH   S  + ++FPF  SS+  SHR  +LRPI+A
Sbjct: 1   MASTTLSIATTIRSSSPLT----SASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISA 60

Query: 61  VSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAE 120
           V APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G AAA 
Sbjct: 61  VEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAA- 120

Query: 121 AVEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAED 180
            VEE+TEFDVVI +VPS++RIAVIK VR LTSLALKEAKELIEGLPKKFKEG++K+EAE+
Sbjct: 121 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 180

Query: 181 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 181 AKKTLEEAGAKVSI 186

[Close]

BLAST of Sgr024117 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-41
Identity = 106/193 (54.92%), Postives = 137/193 (70.98%), Query Frame = 0


Query: 2   ASTLS-TLTLRSSSYLSHSYPSFSTHSSKSTVQFPF---YPSSTGISHRVTHLRPIAAVS 61
           A+TLS   T+RSSS+ S    +    S   +++FPF     SS+ +SHR  +L PI+AV 
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAV 121
            P+KI+K+GS+IS+LTLEE+R+LVD++QDK GVS    APAA    P    GG  A  +V
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATASV 122

Query: 122 EEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAK 181
           E +T FDVVI DVP   RIAVI  +R +TSL+L E+KELIEG PKKFKEGV+K+EAE+ K
Sbjct: 123 ERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDK 182

Query: 182 KQLEEAGAKIAIV 191
            QLEEAGAK++IV
Sbjct: 183 TQLEEAGAKVSIV 193

[Close]

BLAST of Sgr024117 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-16
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 60  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVS----AAAFAPAAVVAAPGA--AAGGDAA 119
           E + K+ +++SNLTL E   L + L+ KL +S     AA  P   +   GA  +AGG+  
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 120 AEAVEEKTEFDVVIEDVPSNARIAVIKTVRGLTSLALKEAKELIEGLPKKFKEGVSKEEA 179
            +  E KT FDV+++   + ++I VIK VR +T+L LKEAK+L+E  P   K+GVSKEEA
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 180 EDAKKQLEEAGAKIAI 190
           E   ++L+  GAK+A+
Sbjct: 163 EKIIEKLKAVGAKVAM 178

[Close]

BLAST of Sgr024117 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11
Identity = 57/162 (35.19%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 37  YPSSTGISHRVTHL----RPIAAVSAPE----KIEKLGSDISNLTLEEARLLVDFLQDKL 96
           +  S G  HR T L    R + AV++PE    K+E++  D+  L   E          K+
Sbjct: 9   FSRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKI 68

Query: 97  GVSAAAFAPAAVVAAPGAAAGGDAAAEA-VEEKTEFDVVIEDVPSNARIAVIKTVRGLTS 156
           G++    A    VA  G+     A+ E    EKT FDV +E   + ++I VIK +R  T 
Sbjct: 69  GLNRYGSA----VAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTD 128

Query: 157 LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAI 190
           L LKEAK L+E  P   K G++KEEAE   ++L+  GA +A+
Sbjct: 129 LGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of Sgr024117 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134069.1	2.4e-77	92.67	50S ribosomal protein L12, chloroplastic-like [Momordica charantia]	[more]
XP_038890576.1	1.0e-72	86.91	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
XP_023536532.1	3.9e-72	88.02	50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960313.1	3.9e-72	88.54	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1...	[more]
KAG7033112.1	6.7e-72	88.02	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Sgr024117 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36688	2.1e-52	68.25	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	1.0e-51	67.89	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P02398	1.4e-51	67.53	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36210	4.9e-49	64.65	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	1.8e-48	65.98	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Sgr024117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXR2	1.2e-77	92.67	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1H8H9	1.9e-72	88.54	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JNN0	4.7e-71	87.50	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FMH9	2.0e-69	85.79	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JTI3	9.8e-69	84.82	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Sgr024117 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27830.1	3.5e-50	64.65	ribosomal protein L12-A	[more]
AT3G27850.1	1.3e-49	65.98	ribosomal protein L12-C	[more]
AT3G27840.1	3.8e-41	54.92	ribosomal protein L12-B	[more]
AT4G36420.1	4.3e-16	41.91	Ribosomal protein L12 family protein	[more]
AT4G37660.1	3.2e-11	35.19	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..189 e-value: 1.4E-25 score: 91.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 118..189
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 123..189 e-value: 5.2E-24 score: 84.4
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 61..109 e-value: 2.6E-13 score: 49.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 61..118 e-value: 1.2E-13 score: 52.9
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 61..125
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 61..189 e-value: 4.3E-33 score: 112.3
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..189
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 57..190 score: 22.643887
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 60..189 e-value: 2.78595E-43 score: 138.828
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr024117.1	Sgr024117.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome