Sgr016888 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr016888
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	30S ribosomal protein S13
Location	tig00153016: 176540 .. 178052 (-)
RNA-Seq Expression	Sgr016888
Synteny	Sgr016888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGACTTTAGCAATGCCAGTGGCTCCTTCGCTCTCCGTTATCTGCAATGGTCGGAACCCTAATCCTCTCTCGAGCACCCTCTCCTTTCCCATTTCAAATCCTCAGGTAAGTTTTCTCCACTTAGCACTGCAATTATGGAGTTCGTTTCTTCAGTCTTAATCTGTTGGTCCCTTCAGTTACTTGGTTTCTATAATTTTATTTCCATAATTTCCTTGTGCATTATCTTTTTGGGTGTGGAGAGGTTCTTGCCCAATTATATCCTGCTAGTTTGTAATTGCCTTCTCTTGATTTCAGATTGTGTCTGCTTCTCGATTTATGTTCCATTGTCTCAGAAATTATTTCCATATTTCTGCATTCCGTCTGCGTGTGTACGAATATTGCAGGTTGATTCTGTGAAACTGTTATTATAGAACATAATCTCAACTCTTAGCTTTTTCTCGTTTTAGTTTGAAATTCTTTTTAGCGATGGTGATTTGAGTTGTTCCTTACTTTTTTCCCAGCTACAAAATTAGACATTATCATGTTTTCATATTAGTGCCCTGCTATTAGCAAGTAATTTATTTCTATCCTTATTGAATAGTATGATGAAACAAAAGTTCTGCATTTCGTTTCCCAAACTGCTAATGCCTGGAGGAACCAAATTCAAGATCCTAATTCCACCCAGACTGTCTCCCCCAACACCAACTAAAAAAAAAAAATCTGCAACCTCTGTTCCAGCCTCCCTTACCCTTTCTGTGCATGATTGTAGACCAAACATATGTAAGGTCTCCCCTGCAGCAATTGGACTGAAAGAGTACTGCAGATTACTGTCTGACCTTACATGGCAAAATGACTTGTTAGTCAATGCTTGTCAATATCAAGTTTGTCGTATGGGTTATTCTTTTGATTGTGAATCTGCAAACGTAACCATATAAGAATCCTGGCTCTTCTTCCATTCTCTTCTTTAATGATCCCTCATTTTTCTTCCTTCAATTTTTCTCAGATTCGTGGTCTTCAAATCAAGTGTGTCCGAGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATGTACATGGAATTGGCCGCAACAATGCTAAGAAAATACTGTATGATCTGAACCTGGAGAACAAAATAACCAAGGACTTATCTGAAGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTTCCTCTCCCTCTCTATCTGTCTTTGTGTGTGTGTTGGTATGCAGTGTAGCTTACAAATACAAATGTTGGTTGTCTCTGAGCTTGTGAGAAGTTGTGCTTACAAATGTGATTGTTGGTTTTCCAGAGGCGGTTCAATGCACTTGCCATAAGGAGATTAAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGATTACCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTGCGGGGAAGAAGAAGGCTCCTCGTTGA

mRNA sequence

ATGGCACAGACTTTAGCAATGCCAGTGGCTCCTTCGCTCTCCGTTATCTGCAATGGTCGGAACCCTAATCCTCTCTCGAGCACCCTCTCCTTTCCCATTTCAAATCCTCAGATTCGTGGTCTTCAAATCAAGTGTGTCCGAGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATGTACATGGAATTGGCCGCAACAATGCTAAGAAAATACTGTATGATCTGAACCTGGAGAACAAAATAACCAAGGACTTATCTGAAGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTTCCTCTCCCTCTCTATCTGTCTTTGTGTGTGTGTTGGCGGTTCAATGCACTTGCCATAAGGAGATTAAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGATTACCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTGCGGGGAAGAAGAAGGCTCCTCGTTGA

Coding sequence (CDS)

ATGGCACAGACTTTAGCAATGCCAGTGGCTCCTTCGCTCTCCGTTATCTGCAATGGTCGGAACCCTAATCCTCTCTCGAGCACCCTCTCCTTTCCCATTTCAAATCCTCAGATTCGTGGTCTTCAAATCAAGTGTGTCCGAGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATGTACATGGAATTGGCCGCAACAATGCTAAGAAAATACTGTATGATCTGAACCTGGAGAACAAAATAACCAAGGACTTATCTGAAGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTTCCTCTCCCTCTCTATCTGTCTTTGTGTGTGTGTTGGCGGTTCAATGCACTTGCCATAAGGAGATTAAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGATTACCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTGCGGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLYLSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

Homology

[Close]

BLAST of Sgr016888 vs. NCBI nr
Match: XP_022141626.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 305.8 bits (782), Expect = 2.4e-79
Identity = 156/181 (86.19%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LAMPVAPSLS+ICNGRNPNPLS+TLSFPIS+PQ+RGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKILYDL+LENKITKDLSEEELISIRDEVSK+MIEGDL        
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 157/181 (86.74%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LAMP+APSLSVICN RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKIL+DLN+ENKITKDLSEEELISIRDEVSKYMIEGDL        
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 155/181 (85.64%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKIL+DLNLENKITKDLSEEEL S+RDEVSKYMIEGDL        
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDL-------- 159

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 160 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 206

Query: 181 R 182
           R
Sbjct: 220 R 206

[Close]

BLAST of Sgr016888 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 155/181 (85.64%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKIL+DLNLENKITKDLSEEEL S+RDEVSKYMIEGDL        
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 1.2e-75
Identity = 153/181 (84.53%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT A+P+A SLS+I N RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQYVHGIGRNNAKKIL+DLN+ENKITKDLSEEELISIRDEVSKYMIEGDL        
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.6e-62
Identity = 126/183 (68.85%), Postives = 145/183 (79.23%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLS-STLSFPISN-PQIRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLS+ICN    NPLS +TL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLP 120
           ++YSLQY+HGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDL      
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL------ 120

Query: 121 LYLSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 180
                    RFNALAI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK
Sbjct: 121 --------RRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 169

Query: 181 APR 182
             +
Sbjct: 181 VSK 169

[Close]

BLAST of Sgr016888 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 228.8 bits (582), Expect = 4.9e-59
Identity = 124/183 (67.76%), Postives = 145/183 (79.23%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPL-SSTLSF-PISNPQIRGLQIKCVRVGGVEIPNNKR 60
           MA TLA PVAPS+S+ICN +    L SS+L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLP 120
           V+YSLQY+HGIGR+ A++IL DL LENK+TK+LSE+EL+ +RDEV+KYMIEGDL      
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDL------ 120

Query: 121 LYLSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKK 180
                    RFNA+AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKK
Sbjct: 121 --------RRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKK 169

[Close]

BLAST of Sgr016888 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.1e-29
Identity = 74/161 (45.96%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 26  SSTLSFPISNPQIR-----GLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILYD 85
           S+T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ V+GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLYLSLCVCWRFNALAIRRLKEI 145
           L + NK+ +DL+ +ELI +R+EV ++   GD +              R     I+RL E+
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQ-HGDELR-------------RRVGSEIQRLVEV 126

Query: 146 QCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 182
            CYRG RH  GLPCRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 127 DCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Sgr016888 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.9e-25
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 35  NPQIRGLQIKCVRVG---GVEIPNNKRVQYSLQYVHGIGRNNAKKILYDLNLENKITKDL 94
           N  + G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L +ENK  KDL
Sbjct: 18  NLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDL 77

Query: 95  SEEELISIRDEVSKYMIEGDLVSLPLPLYLSLCVCWRFNALAIRRLKEIQCYRGIRHIQG 154
           S+ EL SIR+ +SKY+I  D         L  CV        + RL  IQCYRGIRH+  
Sbjct: 78  SKRELYSIRELLSKYLIGND---------LKKCV-----ERDVGRLVGIQCYRGIRHVDS 137

Query: 155 LPCRGQRTKNNCRTLKGKK 171
           LPCRGQRT  N RT + +K
Sbjct: 138 LPCRGQRTHTNARTRRSRK 142

[Close]

BLAST of Sgr016888 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 47  RVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILYDLNLENKI-TKDLSEEELISIRDEVSK 106
           R+ G++IP++KRV  +L Y++G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLVSLPLPLYLSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRT 166
           Y +EGDL               R   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T
Sbjct: 63  YSVEGDL--------------RREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHT 121

Query: 167 LKGKKVAIAGKKK 179
           +KGK  +IAGKKK
Sbjct: 123 VKGKPKSIAGKKK 121

[Close]

BLAST of Sgr016888 vs. ExPASy TrEMBL
Match: A0A6J1CJS2 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011934 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 156/181 (86.19%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LAMPVAPSLS+ICNGRNPNPLS+TLSFPIS+PQ+RGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKILYDL+LENKITKDLSEEELISIRDEVSK+MIEGDL        
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 155/181 (85.64%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKIL+DLNLENKITKDLSEEEL S+RDEVSKYMIEGDL        
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDL-------- 159

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 160 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 206

Query: 181 R 182
           R
Sbjct: 220 R 206

[Close]

BLAST of Sgr016888 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 155/181 (85.64%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+P+APSLS+ICN RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKIL+DLNLENKITKDLSEEEL S+RDEVSKYMIEGDL        
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.0e-76
Identity = 153/181 (84.53%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT A+P+A SLS+I N RN NPLS+TLSFPISNPQ+RGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQYVHGIGRNNAKKIL+DLN+ENKITKDLSEEELISIRDEVSKYMIEGDL        
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.9e-75
Identity = 149/181 (82.32%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLSSTLSFPISNPQIRGLQIKCVRVGGVEIPNNKRVQ 60
           MA TLA+PVAPSLS+ICN R  NPLS+ +SFPISNP++ GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLY 120
           YSLQY+HGIGRNNAKKIL+DLN+ENKITKDL+EEELISIRDEVSKYMIEGDL        
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDL-------- 120

Query: 121 LSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 180
                  RFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP
Sbjct: 121 ------RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAP 167

Query: 181 R 182
           R
Sbjct: 181 R 167

[Close]

BLAST of Sgr016888 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-63
Identity = 126/183 (68.85%), Postives = 145/183 (79.23%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLS-STLSFPISN-PQIRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLS+ICN    NPLS +TL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLP 120
           ++YSLQY+HGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDL      
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL------ 120

Query: 121 LYLSLCVCWRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 180
                    RFNALAI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK
Sbjct: 121 --------RRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 169

Query: 181 APR 182
             +
Sbjct: 181 VSK 169

[Close]

BLAST of Sgr016888 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-37
Identity = 82/123 (66.67%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MAQTLAMPVAPSLSVICNGRNPNPLS-STLSFPISN-PQIRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLS+ICN    NPLS +TL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILYDLNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLP 120
           ++YSLQY+HGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLV +  P
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLV-IHFP 120

Query: 121 LYL 122
           L+L
Sbjct: 121 LHL 122

[Close]

BLAST of Sgr016888 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 128.3 bits (321), Expect = 6.4e-30
Identity = 74/161 (45.96%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 26  SSTLSFPISNPQIR-----GLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILYD 85
           S+T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ V+GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNLENKITKDLSEEELISIRDEVSKYMIEGDLVSLPLPLYLSLCVCWRFNALAIRRLKEI 145
           L + NK+ +DL+ +ELI +R+EV ++   GD +              R     I+RL E+
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQ-HGDELR-------------RRVGSEIQRLVEV 126

Query: 146 QCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 182
            CYRG RH  GLPCRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 127 DCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153

The following BLAST results are available for this feature:

BLAST of Sgr016888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141626.1	2.4e-79	86.19	30S ribosomal protein S13, chloroplastic-like [Momordica charantia]	[more]
XP_038876079.1	3.2e-79	86.74	30S ribosomal protein S13, chloroplastic-like [Benincasa hispida]	[more]
KAA0047502.1	2.7e-78	85.64	30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p...	[more]
XP_008465819.1	2.7e-78	85.64	PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]	[more]
XP_004140327.1	1.2e-75	84.53	30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe...	[more]

BLAST of Sgr016888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42732	3.6e-62	68.85	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82163	4.9e-59	67.76	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
Q9CA19	9.1e-29	45.96	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q8LPW2	7.9e-25	46.04	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP...	[more]
B1VAC3	1.4e-24	45.86	30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1	[more]

BLAST of Sgr016888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJS2	1.2e-79	86.19	30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A5A7TVL6	1.3e-78	85.64	30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CPR4	1.3e-78	85.64	30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408...	[more]
A0A0A0KN28	6.0e-76	84.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1	[more]
A0A6J1JXU5	3.9e-75	82.32	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Sgr016888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14320.1	2.6e-63	68.85	Ribosomal protein S13/S18 family	[more]
AT5G14320.2	1.9e-37	66.67	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	6.4e-30	45.96	Ribosomal protein S13/S18 family	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 129..181 e-value: 7.6E-26 score: 91.5
None	No IPR available	GENE3D	1.10.8.50		coord: 46..113 e-value: 5.5E-23 score: 82.9
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..179
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 130..165 e-value: 5.8E-15 score: 55.8 coord: 47..106 e-value: 2.1E-13 score: 50.7
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 48..168 score: 32.092499
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 45..175 score: 21.217274
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 1..179
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 144..157
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 46..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr016888.1	Sgr016888.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding