Sgr015478 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr015478
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionRNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
Locationtig00003991: 739651 .. 740412 (-)
RNA-Seq ExpressionSgr015478
SyntenySgr015478
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGCGTCCTCTCCGACGGCGATCGGCTCGGCAGCATCCGCTTACAGCAGGTTTGATGGATCGCCTCGGCAGTATCTCTATCTCTCCAGCAGGTATATGGATAGCAGATGTCTTAATGGTGCTCATCCTTGTTGTTCGACTGTTTTATACAATGTTGAGACGTTTAACCTTTATCGGGAACTGATGCATGTTAAAATTCCATTTTACTTACAGGAAAGTGAATTAATATTGAGGAATTTCCCAATGGCGAAGAATCAGTCTTTTTCGATAAAAGACACTGTCTATAAATTGCAGCTTGAAGGCATTCAGAATGAGAACCAGCTATTTGCTGCTGGGTCTCTCATGTCTCGCAGTGACTATGCGTTCTATTGCAAACCTCTGTGGATATCCATTATGCCATTCTAATTTGTTGTCTGATAACACTAGGAAAGGAAAGGCCGGTACAGAATTTCATTAAAAGACCATCATAAGGTGTATGATTTACAAGAGACATATAAGTACTGCTCTTCCACTTGCCTCATTAACAGCCGTGCCTTTGCTGGAAGATTGCAAGATGAGAGGTGTTCAGTTTTGAATCCTGGGAAACTTAAAGAAATTCCAAGGCTGTTTGAGAATCGAAGTTTGGGTTCTAAGAAAAATATGGGGAATAATTGTGATTTGGGGCTATCAGGCCTTGAAATTCAGGAGAAGACAGAAAACAATGTTGAAGAAGTTCCTATTGAAGAGTGGATGGGTCCATCAAATGCAATTGAAAACTAA

mRNA sequence

ATGCCGGCGTCCTCTCCGACGGCGATCGGCTCGGCAGCATCCGCTTACAGCAGGTTTGATGGATCGCCTCGGCAGTATCTCTATCTCTCCAGCAGCCGTGCCTTTGCTGGAAGATTGCAAGATGAGAGGTGTTCAGTTTTGAATCCTGGGAAACTTAAAGAAATTCCAAGGCTGTTTGAGAATCGAAGTTTGGGTTCTAAGAAAAATATGGGGAATAATTGTGATTTGGGGCTATCAGGCCTTGAAATTCAGGAGAAGACAGAAAACAATGTTGAAGAAGTTCCTATTGAAGAGTGGATGGGTCCATCAAATGCAATTGAAAACTAA

Coding sequence (CDS)

ATGCCGGCGTCCTCTCCGACGGCGATCGGCTCGGCAGCATCCGCTTACAGCAGGTTTGATGGATCGCCTCGGCAGTATCTCTATCTCTCCAGCAGCCGTGCCTTTGCTGGAAGATTGCAAGATGAGAGGTGTTCAGTTTTGAATCCTGGGAAACTTAAAGAAATTCCAAGGCTGTTTGAGAATCGAAGTTTGGGTTCTAAGAAAAATATGGGGAATAATTGTGATTTGGGGCTATCAGGCCTTGAAATTCAGGAGAAGACAGAAAACAATGTTGAAGAAGTTCCTATTGAAGAGTGGATGGGTCCATCAAATGCAATTGAAAACTAA

Protein sequence

MPASSPTAIGSAASAYSRFDGSPRQYLYLSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTENNVEEVPIEEWMGPSNAIEN
Homology
[Close]
BLAST of Sgr015478 vs. NCBI nr
Match: XP_022145788.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica charantia] >XP_022145789.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 8.3e-27
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAFAGRLQ+ERCSV+NP KLKEI RLFEN S  SK+NMGNNCDLGLS LEIQEK E
Sbjct: 98  LINSRAFAGRLQEERCSVMNPEKLKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +NV EVPIEEWMGPSNAIE
Sbjct: 158 SNVGEVPIEEWMGPSNAIE 176

[Close]
BLAST of Sgr015478 vs. NCBI nr
Match: XP_031739958.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis sativus] >KGN52984.1 hypothetical protein Csa_015280 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPDKLKEILKLFENMSLDSKENMGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +N+ EVPIEEWMGPSNAIE
Sbjct: 158 SNIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. NCBI nr
Match: XP_008454119.1 (PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis melo] >XP_008454120.1 PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPAKLKEILKLFENMSLDSKENMGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +++ EVPIEEWMGPSNAIE
Sbjct: 158 SSIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. NCBI nr
Match: TYK29645.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPAKLKEILKLFENMSLDSKENMGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +++ EVPIEEWMGPSNAIE
Sbjct: 158 SSIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. NCBI nr
Match: KAA0044516.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLK+I +LFEN SL SK+N+GNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPAKLKDILKLFENMSLDSKENVGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +++ EVPIEEWMGPSNAIE
Sbjct: 158 SSIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. ExPASy Swiss-Prot
Match: F4K1B1 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g26760 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.9e-07
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L  S+ F+G LQ+ R    +  KL EI  LF + SL  K ++  N DL LS L I+E   
Sbjct: 99  LIDSKTFSGSLQEARTLEFDSVKLNEILDLFGD-SLEVKGSLDVNKDLDLSKLMIKENFG 158

Query: 89  NNVEEVPIEEWMGPSNAIE 108
              EE+ +E+WMGPSNA+E
Sbjct: 159 VRGEELSLEKWMGPSNAVE 176

[Close]
BLAST of Sgr015478 vs. ExPASy TrEMBL
Match: A0A6J1CWB1 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Momordica charantia OX=3673 GN=LOC111015168 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.0e-27
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAFAGRLQ+ERCSV+NP KLKEI RLFEN S  SK+NMGNNCDLGLS LEIQEK E
Sbjct: 98  LINSRAFAGRLQEERCSVMNPEKLKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +NV EVPIEEWMGPSNAIE
Sbjct: 158 SNVGEVPIEEWMGPSNAIE 176

[Close]
BLAST of Sgr015478 vs. ExPASy TrEMBL
Match: A0A0A0KVU3 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G009360 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.4e-25
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPDKLKEILKLFENMSLDSKENMGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +N+ EVPIEEWMGPSNAIE
Sbjct: 158 SNIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. ExPASy TrEMBL
Match: A0A1S3BXZ9 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo OX=3656 GN=LOC103494620 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPAKLKEILKLFENMSLDSKENMGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +++ EVPIEEWMGPSNAIE
Sbjct: 158 SSIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. ExPASy TrEMBL
Match: A0A5D3E2V9 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002570 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLKEI +LFEN SL SK+NMGNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPAKLKEILKLFENMSLDSKENMGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +++ EVPIEEWMGPSNAIE
Sbjct: 158 SSIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. ExPASy TrEMBL
Match: A0A5A7TQX7 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002560 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L +SRAF+GRLQDERCSV+NP KLK+I +LFEN SL SK+N+GNNCD   SGLEIQEK E
Sbjct: 98  LINSRAFSGRLQDERCSVMNPAKLKDILKLFENMSLDSKENVGNNCD---SGLEIQEKIE 157

Query: 89  NNVEEVPIEEWMGPSNAIE 108
           +++ EVPIEEWMGPSNAIE
Sbjct: 158 SSIGEVPIEEWMGPSNAIE 173

[Close]
BLAST of Sgr015478 vs. TAIR 10
Match: AT5G26760.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-08
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 29  LSSSRAFAGRLQDERCSVLNPGKLKEIPRLFENRSLGSKKNMGNNCDLGLSGLEIQEKTE 88
           L  S+ F+G LQ+ R    +  KL EI  LF + SL  K ++  N DL LS L I+E   
Sbjct: 99  LIDSKTFSGSLQEARTLEFDSVKLNEILDLFGD-SLEVKGSLDVNKDLDLSKLMIKENFG 158

Query: 89  NNVEEVPIEEWMGPSNAIE 108
              EE+ +E+WMGPSNA+E
Sbjct: 159 VRGEELSLEKWMGPSNAVE 176

The following BLAST results are available for this feature:
BLAST of Sgr015478 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145788.18.3e-2782.28putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica c... [more]
XP_031739958.11.7e-2478.48putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis sat... [more]
XP_008454119.15.0e-2477.22PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [... [more]
TYK29645.15.0e-2477.22putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Cucumi... [more]
KAA0044516.13.3e-2374.68putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Cucumi... [more]
BLAST of Sgr015478 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4K1B19.9e-0744.30Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidops... [more]
BLAST of Sgr015478 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CWB14.0e-2782.28RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Momordica charanti... [more]
A0A0A0KVU38.4e-2578.48RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis sativus OX... [more]
A0A1S3BXZ92.4e-2477.22RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo OX=36... [more]
A0A5D3E2V92.4e-2477.22RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo var. ... [more]
A0A5A7TQX71.6e-2374.68RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo var. ... [more]
BLAST of Sgr015478 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G26760.27.1e-0844.30unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr015478.1Sgr015478.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0043175 RNA polymerase core enzyme binding
molecular_function GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity