Sed0028154 (gene) Chayote v1

Overview


Name	Sed0028154
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Rrna intron-encoded homing endonuclease
Location	LG09: 19830667 .. 19831452 (+)
RNA-Seq Expression	Sed0028154
Synteny	Sed0028154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGAATCCCTCCGTGGCTAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAAACGACCCGTGAACACGTTTACAAAACTATTGTGCCGAGGGGGATGCAGCTTCTTTGCTTACCCTCTCTCGGTGCCTAAACAAAACCCCGGCACAGGTCGTGCCAAGGAACTCAAACAAATTCGCTCGCCCCCGCCCCGACCTTGGTGTGTGGGGGTGGAGCATTCTTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGA

mRNA sequence

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGAATCCCTCCGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAAACGACCCGGGGATGCAGCTTCTTTGCTTACCCTCTCTCGGTGCCTAAACAAAACCCCGGCACAGGTCGTGCCAAGGAACTCAAACAAATTCGCTCGCCCCCGCCCCGACCTTGGTGTGTGGGGGTGGAGCATTCTTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGA

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGAATCCCTCCGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAAACGACCCGGGGATGCAGCTTCTTTGCTTACCCTCTCTCGGTGCCTAAACAAAACCCCGGCACAGGTCGTGCCAAGGAACTCAAACAAATTCGCTCGCCCCCGCCCCGACCTTGGTGTGTGGGGGTGGAGCATTCTTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGA

Protein sequence

MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLRIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPKHQTTRGCSFFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRLSHR

Homology

[Close]

BLAST of Sed0028154 vs. NCBI nr
Match: KAE8637441.1 (hypothetical protein CSA_023571 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 4.5e-48
Identity = 115/164 (70.12%), Postives = 119/164 (72.56%), Query Frame = 0


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPKHQT----------- 120
           CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPK              
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPKTSNDPRTRLQNKPT 120

Query: 121 ------TRGCSFFAYPLSVP---KQNPGTGRAKELKQIRSPPPR 139
                  R  S  A+ L +P   KQN G GRAKEL ++ SP PR
Sbjct: 121 ASGAMGRRARSLLAFLLPLPARLKQNTGVGRAKEL-EMNSPAPR 163

[Close]

BLAST of Sed0028154 vs. NCBI nr
Match: KAG9444583.1 (hypothetical protein H6P81_015923 [Aristolochia fimbriata])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-39
Identity = 88/106 (83.02%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDL LLTSY E          IPSKR+SSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLILLTSYVEIIAIVGLQRGIPSKRKSSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPK 101
           CTHRPS LPIEWSGEVFGSRRR RGRRS NKVSVGEPAEGSLS+P+
Sbjct: 61  CTHRPSFLPIEWSGEVFGSRRRWRGRRSGNKVSVGEPAEGSLSIPR 106

[Close]

BLAST of Sed0028154 vs. NCBI nr
Match: KAF1855634.1 (hypothetical protein Lal_00048004 [Lupinus albus])

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-33
Identity = 94/174 (54.02%), Postives = 102/174 (58.62%), Query Frame = 0


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY E          IPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGR------GRRSRNKVSVGEPAEGSLSMPKHQTTRGCS 120
           CTHRPSLLPIEWSGEVFG RRRGR       RR    V    P     + P       C+
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAAGDVVRRVARGVGTSAPLVSGGATP-------CA 120

Query: 121 FFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRL 163
             ++P +         + K   + R P       GV H+      DSRQRISRL
Sbjct: 121 VSSWPNNKTPAPNAPRKLKSFSRPRRPGDGARAGGVRHA---YPKDSRQRISRL 164

[Close]

BLAST of Sed0028154 vs. NCBI nr
Match: XP_024924876.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 [Ziziphus jujuba])

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 78/105 (74.29%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1    MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR-------------------IPSK 60
            MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE +LR                   IPSK
Sbjct: 1483 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMAIIAIVGLQRGIPSK 1542

Query: 61   RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKV 87
            RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR  R  + V
Sbjct: 1543 RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRRLRMGHAV 1587

[Close]

BLAST of Sed0028154 vs. NCBI nr
Match: TXG51768.1 (hypothetical protein EZV62_024292 [Acer yangbiense])

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-31
Identity = 74/84 (88.10%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGR 79
          CTHRPSLLPIEWSGEVFGSRRRGR
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGR 84

[Close]

BLAST of Sed0028154 vs. ExPASy TrEMBL
Match: A0A0A0LPG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252100 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.0e-58
Identity = 132/191 (69.11%), Postives = 135/191 (70.68%), Query Frame = 0


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPKHQT----------- 120
           CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPK              
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEPAEGSLSMPKTSNDPRTRLQNKPT 120

Query: 121 ------TRGCSFFAYPLSVP---KQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHND 166
                  R  S  A+ L +P   KQN G GRAKEL+     PP     G EHS  I HND
Sbjct: 121 ASGAMGRRARSLLAFLLPLPARLKQNTGVGRAKELEMNSPAPPSLGVRGAEHSSHITHND 180

[Close]

BLAST of Sed0028154 vs. ExPASy TrEMBL
Match: A0A6A5KZ31 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048004 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.0e-33
Identity = 94/174 (54.02%), Postives = 102/174 (58.62%), Query Frame = 0


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY E          IPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGR------GRRSRNKVSVGEPAEGSLSMPKHQTTRGCS 120
           CTHRPSLLPIEWSGEVFG RRRGR       RR    V    P     + P       C+
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAAGDVVRRVARGVGTSAPLVSGGATP-------CA 120

Query: 121 FFAYPLSVPKQNPGTGRAKELKQIRSPPPRPWCVGVEHSCRIIHNDSRQRISRL 163
             ++P +         + K   + R P       GV H+      DSRQRISRL
Sbjct: 121 VSSWPNNKTPAPNAPRKLKSFSRPRRPGDGARAGGVRHA---YPKDSRQRISRL 164

[Close]

BLAST of Sed0028154 vs. ExPASy TrEMBL
Match: A0A6P6FTJ6 (LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 OS=Ziziphus jujuba OX=326968 GN=LOC112489936 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 78/105 (74.29%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1    MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR-------------------IPSK 60
            MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE +LR                   IPSK
Sbjct: 1483 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMAIIAIVGLQRGIPSK 1542

Query: 61   RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKV 87
            RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR  R  + V
Sbjct: 1543 RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRRLRMGHAV 1587

[Close]

BLAST of Sed0028154 vs. ExPASy TrEMBL
Match: A0A5C7H450 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 74/84 (88.10%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------ESLRIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE          IPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGR 79
          CTHRPSLLPIEWSGEVFGSRRRGR
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGR 84

[Close]

BLAST of Sed0028154 vs. ExPASy TrEMBL
Match: A0A4U5PNX9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 76/102 (74.51%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEESLR----------------------- 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE +LR                       
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMAFQAKEIIAIVGLQR 60

Query: 61  -IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR 79
            IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR
Sbjct: 61  GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGR 102

The following BLAST results are available for this feature:

BLAST of Sed0028154 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637441.1	4.5e-48	70.12	hypothetical protein CSA_023571 [Cucumis sativus]	[more]
KAG9444583.1	5.0e-39	83.02	hypothetical protein H6P81_015923 [Aristolochia fimbriata]	[more]
KAF1855634.1	4.1e-33	54.02	hypothetical protein Lal_00048004 [Lupinus albus]	[more]
XP_024924876.1	2.2e-31	74.29	LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 [Ziziphus jujuba]	[more]
TXG51768.1	3.8e-31	88.10	hypothetical protein EZV62_024292 [Acer yangbiense]	[more]

BLAST of Sed0028154 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0028154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPG1	4.0e-58	69.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252100 PE=4 SV=1	[more]
A0A6A5KZ31	2.0e-33	54.02	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048004 PE=4 SV=1	[more]
A0A6P6FTJ6	1.1e-31	74.29	LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 OS=Ziziphus jujuba OX=...	[more]
A0A5C7H450	1.8e-31	88.10	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1	[more]
A0A4U5PNX9	4.1e-31	74.51	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1	[more]

BLAST of Sed0028154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028154.1	Sed0028154.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity