Sed0027590 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAAAAAAAACCCTAACCGGTAAGTCTACGCTTGAAATGCCGCATTCATTTCCCTTCCCATTCCAAACACATCTTTCACGCATTTTGATTCTCCTTTTGGATCTGCGTTCATGATTCATTTCCCCCCTTGTTCTTACTCGCTAGCTCCAACCCCTCATTTTTGCCCAAATATGGCAAAAATATGCGATTCTTGAACTCCCTTCTCTTTATTCATTTCCATTTCTGGTTCCATTCCTTCTATTGTTCGCTGGTTATTGCAGGTTCTTATCACGAAAGTGGAAATTTCTGTAATCGGCGCTGTTTTATCTCACTTTTTCTGATTCTCTCTTCGTTTTCTTGATATAGAGTTTGAGTGGATCGGAAATGGCGAAGGAGAAAATCCAGATCCGGAAGATCGATAACGTGACGGCGAGGCAGGTTACGTTCTCCAAGCGCCGACGGGGACTGTTCAAGAAAGCGAAGGAGTTATCCGTTTTGTGCGACGCCGATGTCGCTCTTATCATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGTTCAAGGTTTTGATGAATGTTTCTCTCTGCTCTTTTCTTTCTTTTTTTTTTTTTTGAATTTTTGCAGAAACTAGAACTTTAATTGTCTCGATTTTTGAGTTTTTCTGTACCTACGCCCTGTGTTGCTAAAAATGGTGAGAACGAACTATGACAGAAAATAAAGAAATAAATGCAGATAACACATGTATTTGTGTACAACAATCTTACGGAAGAAAAGATACGAACGAAGGAGAAAGTGTTTTCACTAATTTGATGATGGAAATTGATGACTCTTCTTCAAAAGTAGGGCTCAAATTTCTTGTGAACGAACGGCAAAAAGGCTAAGGGTGTGCTTGGGCACCCGTTTGGTTAGAATAGACGAAAGCTTATGATAAATGATGTTTGAGGAAGAGTTATTATAAGAACAATTATGATGAACCGTGGTTGAGCAGCTGGTTATCTAACAAAAAATAATATACGTAAGTTTTAGATAAACGAGTATAGAGTTTTAGGTAAAGGAGCATCTGTAACTACCGTTTATAATAAATGATGGGACAAAAATCGATTGGGTTATTATAACCAACTCGACTGTTTACATAAACGGACTCAAACACACCCTAAATGATAACGATAAATCATGCTTCAAGCTTGGTGAACTGAAACAAACCTCAAGCTTCAATCTCTATCGTAGTTTTTGTTGATGTTTTTATGCACAACTCTTGCTGTTTATACAGATTTGAGTGACAAATATAGAATATGGATTCATTTATCATTAACTTCTTCTCGTTTTTATCATTTTCTTTGCTGAGTTCTATCTCTTTTTGATTTTCTGAAGCATAAAGGGAATTATAGAAAGGCATAATTTGCATTCCAAGAACCTTCAGAAATTGGAACAGCCGTCCCTTGAACTACAGGTTTGGCGTTTTTTTCCCCCTCATTTCTTATCATATCCTTAGCTGATTAAAATGGCATTTCATCTCTCTTACATGGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGTATTGTATTCTATAAGTATTATTGAAAGATATGATTAATATTGTTATGGACACTGCAAAACAAGGATAATAAGGTTTGTTATTCAAAACAACATTCGGTACAAAGATTTGAACACATAATAAGGTTTACTATATCATTATTGGCTTACTGAAAACGACTTTATTTACATAACTCGATTTTTTTAAAAAAAGTAAAATTAATAGACACTTCATTATTAATATATTTTTATCCTAAAAATTAGAAACCTAATTTCAAAGTAGTTTCAGCAAGCACTGAACTGAATAGAAATATGATATTTTGCTCCTTCAAATCCACCTTTTATTCTGTTTTATTAGTAGCTACTATTTTGCTGTGAAGTATGGTGTTCAGTTGATTATTTTCATACATATCCATCCAGTACATTTCTTTTCTGGAACACGTATGTTTGATTTATTCTGAATTTTTAATCCTTTTCCTTTTCAAGAGCTCAACTTATTTTGTTATCATTGATGTTAGGTGATAAGATTTTAACTTGAGGACTTGGAATATTGTAACACTTGATGGTCCCTTTATTGATTTACTGAAATTTTTGTTTACAATTATCCTTTGTTTCAGCTGGTTGAAAATAGCAATTACACTCGATTAAACAAGGAAATTGCAGATAAAACCCATCAGCTAAGGTATCTAATAAGCTATTTATTGACGAGAAGTTGTTTCGTTTTTTCAAAAATCTTTTTAGTTCAATATATTAATATATATTGGCGGGGGTTTGAACCACAAAAGAATTTAAGTAAAGAAATAAATGTTTTCGCTTGTTGATCTCTCTATTTCTTAACTTCGGAAAAATCTTAATTTACAGTCACTTAGACTCAGATATAAGCGAGTCCATTCTATAATCTAAACTTTATTCAATATCTACAGTTTTTTTTTTTTTTTTTTTTTTATTAATATAAAGGGTTCAATTTCGTTTTTTAAGCTTTTTTAATCATAATAGTGGCTAGGAATTCGAACAGCATACTTAGTACTTGTTAACATGTGACCGATTACGTTATTTTATTTGTAGAGTTGGATGAGATGGTCTTTGTGCTGGTACTGGCTATTTAGTAGTGTTGGATGCTTTTAATTGGTTGGGTTTGAATATTTCATATCCTATTTGATAATTATTTTATTTTTTAATTTTCTATTTCTAAAGATTGTTCATCTATTTTTGCCAATGCATCTGAGTTCTTGTAGCCAAATCCCATAAACACAAATAAGTTTTTTTTTTTTTTAAAAAAAAACTTAAAAAATGGCTTCATGTAATTGACAATTATAAACTGAACACAATGAATTTAAGAATAAAAACAAAACACATCATTAGTTATCATATACAGCCTTGGTTTGTGACCATTAATTTGATTGAATTCATCATTTACACTTTATTGAAAGTCATTAATTATACACGAAAAATGTCATTAGTTTTGTGACCATTAATTTAACCGGATAGAATCTAATTTGTCATATTTTATTTTTTTCTAAAATTTTGACATCCACACTTTTTTTCCTTTGTTTTATTTATTCATAAAAAATTCCTTTTTTATTAGAGTTTTGTTAGTTGAATTTACGAATAATACACTGATTTATGGAACATTTTCTAATCTAGTATTGAGCTATTAATTATAACATTTGGTTGAGTTCAAGTGTTAAAATAGATGAAAACAAAAGTTCATGAATTAGAATCAAGTAAAAAAGATAAACTCCTTTGGTAATCCTTGTATAGACTATCGCTACAAATTAATGTCATAAACAAGTCTCGAAATTGGGACTTCCACACCCTCAAAATTCAAGTCTTCGATTAACCGCAGCATTATTCTTTGGGGACTTTTTTTTTTTCTCTTTTATTCTATGATGTTTAAGCGCTTAGCCAGATTATAATATGACCTCTTCAGACAGAATTTTGTAGCACACTCGGGCTCATATTCACAATCATGATTAAACATGTTTGATCTTTTAGGCAGATGAGGGGTGAGGAGCTCCAATCGCTGAATATAGAGGAACTGCAACAGTTAGAGAAGTCACTAGAGACTGGATTGAGCCGTGTGATGGAGAGAAAGGTATTTCTCCTTTCTTTACATTTCGTAATAAAATCTTCTCTTTTTATTTGATATACAGTTTTCTCTTTTCTGTCATAGGGCGAAAAGCTCGTGAAAGAGATCACTGACCTTCAAAGAAAGGTAATTAACTCTCTAATAGTTAAGACGACTACAGCTCAAAGGATCCATATTAGAAGAATCTATTGCAATCTTTCCTATAATACTTGATGATAATGTTATGTATTTAATTTAAATTATAATCATAAATATTAGACCCCATTTGATAACCATTTGGTATTTTGTTTATGAAATTTAAACTTATTTTTACTCAAATTTCCTATTATGTGCTCCATCTTTCCTATAATATATCCATCTTTCCTTAAGAGAGTAGGTGAATACTAACCAAATTTCAAAAACAAAAACAAGGTTTGGGAACCTATTTATTTTTGTTTCAAAATTTTTATTTTGTTTATTAAAATATAGGTAAGAAGTAGATATTCAAATAAGGAAAAAATATAGTAAAGTAGTTGTAGTCTTAAATTTCATGAACAAAAAACGAAAAATAAAATGGTTATCAAATGGGGGCATAGTAATTCATTTAAATAACTTTTCAAACTTAGTTGCATGTTGTTACATTTGGTGCACCCAAATTAATATAGAAACCTAGCAGACTAGTAAAATTTAGCAAATATGGTTCTTGGTATTGACAAGTATGTCACGTACTTTCTATATTAATTACAGCATATTTACAGAATTAAAATATGTTAATGATTATGTATGCAAATATTTTAAAATTTGACTATTTTTGTAATTATTTTGTAAGAAGGGATCATTCAATACATATTATTCTGATTATTGTAGATGTGTATAGTTCTGTTATTTATTTGCAAATTTGAAGCATATGTAAACACAGTCTTCAAGTGTCGCTCATAATGCATTCTGTGATACTTGTTTAAGGATAGTTTGAAGATAGAAGTAAGGGTGCTTTTAAGGAAATTAGTTATTGAAGTTCTGTTATAAATAATGGGTAGATGAATTGTAGAAGATATGGTATATTTTGGTAAATCATTCTTTGGTAGATTGATTATGAGAATTCTAATCTCGTCTGATGATTGATATTGTGATTTCTGTGTTTATTAGATTTGATTTTATTATTTAAATACCTTGCACATTATAATCAATATTAGTAAAAAACAAATGGTACATTAAAAGATTGTATGATTTGAACCATACACCTGGTAGGTATTTTAACACATTGTAAAGCTAAATTCAGAATTTTATGTGCATGCAGTCGGCCGAGTTGCTGGAAGAGAATAAGCGACTGAAACAACAAGTAAGAATCAACCCTCTTCGCAGCCTTACAAATATGCGTCGTTTACTTACCTTTGCAACTTACAGCTCGCGGTGGTTTGCAGGCAGCGAAGATTAATCGCGTGGTCAGGCGCATCGGCATAGAGCCCGAGATCTTGGTCGTGGAAGATGACCAGTCGTCGAGCTCGGCAACCGAAGCTTGTGTCTCTAACTCCAATGGCCACCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTAACCTCATTCTCATTCCATTGGAGTTTATTTCAAATATAGTCAAATAATATATGATTACGTGGTCTGTTTATATTCCATGGTTGCAGGCTGCCGTATTCCGGTTGATCGAGATGGAACAAGAAGATGAACAGTTACCATAGCTAGCATCAGGTAGTATGTAAAAATAATTATACCCTTAAATTTGGGTTTGCATCTCATCTTGATTATCCAATTCATGTGACTCCATTGAAATATGAAAACAAGGTTCCCACTTTTACACCGTTTTGATGAATCTGTAGTTAATATGCAACTGGGCTTGGATTTATAACCTTTGTGTATGCTAGTGGTCACGTTCTATTATGGTTGGTTATTACTCTAGTGGAGGCTTGAAACGACAGCGTTTTCTTGTGTCATTGCCCATGATCTGTATATCAGATTTCATTCATAATTTTAGTTGGTTAAAATGTTTGTTTGGTCCA AAAAAAAAAAAAAAAAAAACCCTAACCGGTAAGTCTACGCTTGAAATGCCGCATTCATTTCCCTTCCCATTCCAAACACATCTTTCACGCATTTTGATTCTCCTTTTGGATCTGCGTTCATGATTCATTTCCCCCCTTGTTCTTACTCGCTAGCTCCAACCCCTCATTTTTGCCCAAATATGGCAAAAATATGCGATTCTTGAACTCCCTTCTCTTTATTCATTTCCATTTCTGGTTCCATTCCTTCTATTGTTCGCTGGTTATTGCAGAGTTTGAGTGGATCGGAAATGGCGAAGGAGAAAATCCAGATCCGGAAGATCGATAACGTGACGGCGAGGCAGGTTACGTTCTCCAAGCGCCGACGGGGACTGTTCAAGAAAGCGAAGGAGTTATCCGTTTTGTGCGACGCCGATGTCGCTCTTATCATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGTTCAAGCATAAAGGGAATTATAGAAAGGCATAATTTGCATTCCAAGAACCTTCAGAAATTGGAACAGCCGTCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACTCGATTAAACAAGGAAATTGCAGATAAAACCCATCAGCTAAGGCAGATGAGGGGTGAGGAGCTCCAATCGCTGAATATAGAGGAACTGCAACAGTTAGAGAAGTCACTAGAGACTGGATTGAGCCGTGTGATGGAGAGAAAGGGCGAAAAGCTCGTGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGTTGCTGGAAGAGAATAAGCGACTGAAACAACAAGCAGCGAAGATTAATCGCGTGGTCAGGCGCATCGGCATAGAGCCCGAGATCTTGGTCGTGGAAGATGACCAGTCGTCGAGCTCGGCAACCGAAGCTTGTGTCTCTAACTCCAATGGCCACCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGTTGATCGAGATGGAACAAGAAGATGAACAGTTACCATAGCTAGCATCAGGTAGTATGTAAAAATAATTATACCCTTAAATTTGGGTTTGCATCTCATCTTGATTATCCAATTCATGTGACTCCATTGAAATATGAAAACAAGGTTCCCACTTTTACACCGTTTTGATGAATCTGTAGTTAATATGCAACTGGGCTTGGATTTATAACCTTTGTGTATGCTAGTGGTCACGTTCTATTATGGTTGGTTATTACTCTAGTGGAGGCTTGAAACGACAGCGTTTTCTTGTGTCATTGCCCATGATCTGTATATCAGATTTCATTCATAATTTTAGTTGGTTAAAATGTTTGTTTGGTCCA ATGGCGAAGGAGAAAATCCAGATCCGGAAGATCGATAACGTGACGGCGAGGCAGGTTACGTTCTCCAAGCGCCGACGGGGACTGTTCAAGAAAGCGAAGGAGTTATCCGTTTTGTGCGACGCCGATGTCGCTCTTATCATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGTTCAAGCATAAAGGGAATTATAGAAAGGCATAATTTGCATTCCAAGAACCTTCAGAAATTGGAACAGCCGTCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACTCGATTAAACAAGGAAATTGCAGATAAAACCCATCAGCTAAGGCAGATGAGGGGTGAGGAGCTCCAATCGCTGAATATAGAGGAACTGCAACAGTTAGAGAAGTCACTAGAGACTGGATTGAGCCGTGTGATGGAGAGAAAGGGCGAAAAGCTCGTGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGTTGCTGGAAGAGAATAAGCGACTGAAACAACAAGCAGCGAAGATTAATCGCGTGGTCAGGCGCATCGGCATAGAGCCCGAGATCTTGGTCGTGGAAGATGACCAGTCGTCGAGCTCGGCAACCGAAGCTTGTGTCTCTAACTCCAATGGCCACCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGTTGA MAKEKIQIRKIDNVTARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSIKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQSLNIEELQQLEKSLETGLSRVMERKGEKLVKEITDLQRKSAELLEENKRLKQQAAKINRVVRRIGIEPEILVVEDDQSSSSATEACVSNSNGHPQDLESSDTSLKLGLPYSG Homology
BLAST of Sed0027590 vs. NCBI nr
Match: XP_004143442.1 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KGN49102.2 hypothetical protein Csa_003741 [Cucumis sativus]) HSP 1 Score: 380.9 bits (977), Expect = 7.5e-102 Identity = 206/229 (89.96%), Postives = 220/229 (96.07%), Query Frame = 0
BLAST of Sed0027590 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo]) HSP 1 Score: 379.8 bits (974), Expect = 1.7e-101 Identity = 205/229 (89.52%), Postives = 220/229 (96.07%), Query Frame = 0
BLAST of Sed0027590 vs. NCBI nr
Match: XP_038883728.1 (MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883730.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883731.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883732.1 MADS-box protein SVP-like [Benincasa hispida]) HSP 1 Score: 379.4 bits (973), Expect = 2.2e-101 Identity = 204/229 (89.08%), Postives = 221/229 (96.51%), Query Frame = 0
BLAST of Sed0027590 vs. NCBI nr
Match: KAG6594905.1 (O-fucosyltransferase 31, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 369.0 bits (946), Expect = 2.9e-98 Identity = 202/229 (88.21%), Postives = 216/229 (94.32%), Query Frame = 0
BLAST of Sed0027590 vs. NCBI nr
Match: XP_022962900.1 (MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box protein JOINTLESS-like [Cucurbita moschata]) HSP 1 Score: 369.0 bits (946), Expect = 2.9e-98 Identity = 202/229 (88.21%), Postives = 216/229 (94.32%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 9.6e-76 Identity = 158/242 (65.29%), Postives = 194/242 (80.17%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.2e-73 Identity = 162/239 (67.78%), Postives = 195/239 (81.59%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55 Identity = 126/227 (55.51%), Postives = 172/227 (75.77%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 7.9e-54 Identity = 123/226 (54.42%), Postives = 173/226 (76.55%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3) HSP 1 Score: 206.5 bits (524), Expect = 3.3e-52 Identity = 121/226 (53.54%), Postives = 170/226 (75.22%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 8.1e-102 Identity = 205/229 (89.52%), Postives = 220/229 (96.07%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98 Identity = 202/229 (88.21%), Postives = 216/229 (94.32%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy TrEMBL
Match: A0A5D3CLB3 (MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003250 PE=4 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 1.2e-97 Identity = 205/254 (80.71%), Postives = 220/254 (86.61%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy TrEMBL
Match: A0A6J1BWE4 (MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111005943 PE=4 SV=1) HSP 1 Score: 365.5 bits (937), Expect = 1.6e-97 Identity = 202/230 (87.83%), Postives = 216/230 (93.91%), Query Frame = 0
BLAST of Sed0027590 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 3.5e-97 Identity = 199/229 (86.90%), Postives = 215/229 (93.89%), Query Frame = 0
BLAST of Sed0027590 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 284.6 bits (727), Expect = 6.8e-77 Identity = 158/242 (65.29%), Postives = 194/242 (80.17%), Query Frame = 0
BLAST of Sed0027590 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 272.3 bits (695), Expect = 3.5e-73 Identity = 154/242 (63.64%), Postives = 190/242 (78.51%), Query Frame = 0
BLAST of Sed0027590 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 ) HSP 1 Score: 216.9 bits (551), Expect = 1.7e-56 Identity = 126/227 (55.51%), Postives = 172/227 (75.77%), Query Frame = 0
BLAST of Sed0027590 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 ) HSP 1 Score: 126.7 bits (317), Expect = 2.4e-29 Identity = 75/176 (42.61%), Postives = 116/176 (65.91%), Query Frame = 0
BLAST of Sed0027590 vs. TAIR 10
Match: AT3G30260.1 (AGAMOUS-like 79 ) HSP 1 Score: 125.6 bits (314), Expect = 5.3e-29 Identity = 76/174 (43.68%), Postives = 116/174 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|