Sed0026878 (gene) Chayote v1

Overview


Name	Sed0026878
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein cornichon homolog 4-like
Location	LG05: 6972208 .. 6974676 (-)
RNA-Seq Expression	Sed0026878
Synteny	Sed0026878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATATCTATGCATGGCTCCTCTCCTTTTTCTTTATCATTGCGCTTCTCATTCTCGTCGTTTTTCAGGTTCCCTTCTAACCCTAGAATTTCTCTATTTTCCTTAAGTTGTTGACGGATTTAGGTTTTGGTGTTTGTTTCCCCCCCGAAACTATGTTTTCTGCTAATGATATTACGAGATTTAATCTGATTGATTTGTATTCGAAATTGCTTGATGGAAATCCTGTTTGTTTAATGGAAATCCTGCTAGAGACTTTGACTGAAGTTTCTTAGCAATGATGCTTGTATAGATAAACATGGCTTTCACTTCCTACTAGTGGATAACCTTTATGTCCGGATGTCGTCCCAGGGTGGTGCGTTGGTTGAACACTTGAGCTTTGAAAGTGTGCTTCCTTTAAGGTCCTCCACTGGAGACATTAAGGAAAATACAGTAGCCTACGGATAGGCGTGTTCATAGATATAGTGGAGCAAAGTTTTGATTTTCCGGTTTCAGAAAAAAAAAAAAAAAAACTCTTATGTCCAGATGTCTTATGGTTGGTTAGAATGCCCCCTTGATTTCTCAACATAAATGATATATCTCATTTTGTTTGTTCATTTTGATATCCGTGACTATTTGGGCCAGCTTGCGATCACGGGACATACTGTCTGACCTTTTAACATTTGGATGTCTAGTAAATTTGGATGAATCAATTCTAAGTAGGTGAGCACCATGAATTGAACCCATCATCTTTTAATTTCCCGAGACCCTCTTTGTGGTTTCCTTCTATGTTCTTTGAGAATCATAATTGCTTGTGCGATCTGGATCTTTAATCCTTTAGCACTTTACCAGAGACATCATTGGTGCTTGTTGGTACGTTTTGGTGGAGACTTGCTGTCTTGACTCATTTTTGGATGCATACATGTTACATTGGGCTTGTTTTGCTGCATATATATCTTAATTCGCTTATACCAAGTAGTTAATGATACGAGCATTCCTTACCTATGAATATTTGAATTGGATGGTTACTGTATTTTCAACTGGCGAAACGATGTTGGAACTGAGAAACTTATGATGTGTTTGAAACTTGTTGCAGCTGATGTGCTTAGCTGATCTTGAGTTCGATTATATCAACCCTTATGACTCCTCATCACGGATAAACAAGGTGGTTGTTCCTGAGTTCATCACCCAAGGAGTCTTGTTCATCTTCTATCTTCTTACAGGGCATTGGCTCATGTCATTCTTTTGTGTGCCCTGCCTCTATTACAATATAAGATTGTAAGTTTCTCTAATTCTTGCATCTTCAATCCGATTGTTGCTAAATTGGGCAGTAGGCAATAGGCTATAAAAGTTGAAAGAAAAAAAAATGACGAGGTATTATTGCATAATTCTTAGCCGGGTGTATACGTCTATTGGTTGCCAATTTGACCTAAAGAACTTCACATTTATTATTCTGGGCTCTGAAAGGAGAGGGCTAGCCAAATGCTCAGAGTTGATAGCCCTTTCTCTTTGAATGTATGTATTGTTTTAGATCTTCTGAGATTTAGAATAATATCGTCAGTTCTTAGATAAGTTAATGTGTTGAGGATCTAGTAGTCTCATACTTAGGCTCTTTGGAGATTCCTACAATACAATACAACAGTGGTGTGACTGGAACTAATTTTACACTGGATACCATTTTTTTTATAATTGTGAGTGTCTAGACTAGTTTATGCGTATATTGATTATTTTCTCAGGACATACCATTGGACCCTACGTCCCTAAGGGGTGGTGCAGTAGTTGAAGACTTGGGTTTTGAGGGTATGCTCCCCTCAAACTCAAGGTTCTGGGTTCGAGACTTAGCTGTGATATTATTCCTTCGATGTCTCCAGTGTCTGGCTTAGGGACGCTAAGCCACGGGCGTGGTTACCCTTGTTTCAAAAAAATACCATCGGACCCTACAACATTTGAAAAAGAAACCAGTAAGAAATTATTTTCTAAGTTGGTGACCACCATGGATGTAACCCATCTCCTCTTGGTTCGGTTTCCCAATGTCCCTTTTCATCACTAGGCCCATCCACGAATATGATGGGTTACCCATGGATATGATTTAGGGTACGCCAAACTGATATCGAGCGTATTTTACATTGGGTTTGTGAGCTTTATACTTGACTTGTTTGTTGCTGGTAATTGTCATGCCAAGCTTCTTGGTCCATCTGATGTGTGATTTCTTGGTAATTAGGTACACTCAGCAAAAGCATCTGGTGGATGTTACTGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCAAAGGCTTTTCAAACTAGTCTATCTTGTTTTTCTCCTCTTTCTCTCTATATTTTGGTAATCCAATAGGAGAGAGCATTTTCTTATTTTGAATCCCATTGTTAACACCATTTATTAAAATTGTTGAGATCTGTTCTCTTCCTTTTGTTTTTGTGTGTTTTGCAGGTTGATTTACAGTGCCTTGGAGGATCATGATTATTGA

mRNA sequence

ATGGCGGATATCTATGCATGGCTCCTCTCCTTTTTCTTTATCATTGCGCTTCTCATTCTCGTCGTTTTTCAGCTGATGTGCTTAGCTGATCTTGAGTTCGATTATATCAACCCTTATGACTCCTCATCACGGATAAACAAGGTGGTTGTTCCTGAGTTCATCACCCAAGGAGTCTTGTTCATCTTCTATCTTCTTACAGGGCATTGGCTCATGTCATTCTTTTGTGTGCCCTGCCTCTATTACAATATAAGATTGTACACTCAGCAAAAGCATCTGGTGGATGTTACTGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCAAAGGCTTTTCAAACTAGTCTATCTTGTTTTTCTCCTCTTTCTCTCTATATTTTGGTTGATTTACAGTGCCTTGGAGGATCATGATTATTGA

Coding sequence (CDS)

ATGGCGGATATCTATGCATGGCTCCTCTCCTTTTTCTTTATCATTGCGCTTCTCATTCTCGTCGTTTTTCAGCTGATGTGCTTAGCTGATCTTGAGTTCGATTATATCAACCCTTATGACTCCTCATCACGGATAAACAAGGTGGTTGTTCCTGAGTTCATCACCCAAGGAGTCTTGTTCATCTTCTATCTTCTTACAGGGCATTGGCTCATGTCATTCTTTTGTGTGCCCTGCCTCTATTACAATATAAGATTGTACACTCAGCAAAAGCATCTGGTGGATGTTACTGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCAAAGGCTTTTCAAACTAGTCTATCTTGTTTTTCTCCTCTTTCTCTCTATATTTTGGTTGATTTACAGTGCCTTGGAGGATCATGATTATTGA

Protein sequence

MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLFIFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLLFLSIFWLIYSALEDHDY

Homology

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BLAST of Sed0026878 vs. NCBI nr
Match: XP_023532889.1 (protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >KAG6606147.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLLTGHW+MSFFCVP LYYN+RLYTQ+KHLVDVTEIFNQLPWEKK+RLFKLVYL+ LL
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDHD
Sbjct: 121 FLSIFWLIYSALEDHD 136

[Close]

BLAST of Sed0026878 vs. NCBI nr
Match: XP_022996131.1 (protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein cornichon homolog 4-like [Cucurbita maxima])

HSP 1 Score: 250.4 bits (638), Expect = 9.1e-63
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLLTGHW+MSFFC+P LYYN+RLYTQ+KHLVDVTEIFNQLPWEKK+RLFKLVYL+ LL
Sbjct: 61  IFYLLTGHWIMSFFCLPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDHD
Sbjct: 121 FLSIFWLIYSALEDHD 136

[Close]

BLAST of Sed0026878 vs. NCBI nr
Match: XP_022957749.1 (protein cornichon homolog 4-like [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 125/136 (91.91%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVIPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLLTGHW+MSFFCVP LYYN+RLYTQ++HLVDVTEIFNQLPWEKK+RLFKLVYL+ LL
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQREHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDHD
Sbjct: 121 FLSIFWLIYSALEDHD 136

[Close]

BLAST of Sed0026878 vs. NCBI nr
Match: XP_038907022.1 (protein cornichon homolog 4-like [Benincasa hispida])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 123/136 (90.44%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLL+GHW+MS FC+P LYYN+RLYTQ+KHLVDVTEIFNQLPWEKKQRLFKL+YLV LL
Sbjct: 61  IFYLLSGHWIMSLFCIPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLIYLVSLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDH+
Sbjct: 121 FLSIFWLIYSALEDHE 136

[Close]

BLAST of Sed0026878 vs. NCBI nr
Match: XP_004147569.1 (protein cornichon homolog 4 [Cucumis sativus] >KGN50189.1 hypothetical protein Csa_000315 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 123/136 (90.44%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLL+GHW+MS  C+PCLYYN+R+YTQ+KHLVDVTEIFNQLPWEKKQRLFKLVYLV LL
Sbjct: 61  IFYLLSGHWVMSLLCMPCLYYNLRMYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDH+
Sbjct: 121 FLSIFWLIYSALEDHE 136

[Close]

BLAST of Sed0026878 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-50
Identity = 95/136 (69.85%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL 
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           +FYLLTGHW M+  C+P LYYN  LY++++HLVDVTEIFN L WEKK+RLFKL Y+V  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FL+IFW+IYSAL+D++
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]

BLAST of Sed0026878 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.0e-45
Identity = 86/136 (63.24%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG L 
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           +FYL+TGHW M+  CVP LYYN  LY++++HL+DVTEIFN L WEKK+RLFKL Y++  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FL+IFWLIYS L+D++
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]

BLAST of Sed0026878 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 9.9e-44
Identity = 82/115 (71.30%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 22  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLFIFYLLTGHWLMSFFCVPCLYY 81
           +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL +FYLLTGHW M+  C+P LYY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLLFLSIFWLIYSALEDHD 137
           N  LY++++HLVDVTEIFN L WEKK+RLFKL Y+V  LFL+IFW+IYSAL+D++
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

[Close]

BLAST of Sed0026878 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36
Identity = 71/134 (52.99%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           M D+  W++SF F+  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+L 
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           ++Y+LTGHW M+   +P L+YNIRLY +++HL DVTE++N   WE+K+R++K+ ++   +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSIFWLIYSALED 135
           F++ +WLI+SAL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]

BLAST of Sed0026878 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-27
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 3   DIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLFIF 62
           D++ W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG L + 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLLFL 122
           +LLT HW+     VP   Y+  LY ++++L+DVTE+F  + +EKK R  KL + VFL  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SIFWL----IYSALEDHD 137
            +F L    +YS  ED D
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

[Close]

BLAST of Sed0026878 vs. ExPASy TrEMBL
Match: A0A6J1K131 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491445 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.4e-63
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLLTGHW+MSFFC+P LYYN+RLYTQ+KHLVDVTEIFNQLPWEKK+RLFKLVYL+ LL
Sbjct: 61  IFYLLTGHWIMSFFCLPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDHD
Sbjct: 121 FLSIFWLIYSALEDHD 136

[Close]

BLAST of Sed0026878 vs. ExPASy TrEMBL
Match: A0A6J1H2W0 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459200 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.5e-63
Identity = 125/136 (91.91%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVIPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLLTGHW+MSFFCVP LYYN+RLYTQ++HLVDVTEIFNQLPWEKK+RLFKLVYL+ LL
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQREHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDHD
Sbjct: 121 FLSIFWLIYSALEDHD 136

[Close]

BLAST of Sed0026878 vs. ExPASy TrEMBL
Match: A0A0A0KMS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157960 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.4e-62
Identity = 123/136 (90.44%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLL+GHW+MS  C+PCLYYN+R+YTQ+KHLVDVTEIFNQLPWEKKQRLFKLVYLV LL
Sbjct: 61  IFYLLSGHWVMSLLCMPCLYYNLRMYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDH+
Sbjct: 121 FLSIFWLIYSALEDHE 136

[Close]

BLAST of Sed0026878 vs. ExPASy TrEMBL
Match: A0A6J1E8A9 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430316 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFF IIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVL 
Sbjct: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLLTGHW+MS FCVP LYYNIRLYTQ+KHLVDVTEIFNQLPWEKKQRLFKLVYLV L+
Sbjct: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDH+
Sbjct: 121 FLSIFWLIYSALEDHE 136

[Close]

BLAST of Sed0026878 vs. ExPASy TrEMBL
Match: A0A1S3ATW1 (protein cornichon homolog 4-like OS=Cucumis melo OX=3656 GN=LOC103482667 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.4e-61
Identity = 121/136 (88.97%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           MADIY WLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1   MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           IFYLL+GHW+MS  C+PCLYYN+++YTQ+ HLVDVTEIFNQLPWEKKQRLFKLVYLV LL
Sbjct: 61  IFYLLSGHWVMSLLCMPCLYYNLKMYTQRNHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FLSIFWLIYSALEDH+
Sbjct: 121 FLSIFWLIYSALEDHE 136

[Close]

BLAST of Sed0026878 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 95/136 (69.85%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL 
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           +FYLLTGHW M+  C+P LYYN  LY++++HLVDVTEIFN L WEKK+RLFKL Y+V  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FL+IFW+IYSAL+D++
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]

BLAST of Sed0026878 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-46
Identity = 86/136 (63.24%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG L 
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           +FYL+TGHW M+  CVP LYYN  LY++++HL+DVTEIFN L WEKK+RLFKL Y++  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSIFWLIYSALEDHD 137
           FL+IFWLIYS L+D++
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]

BLAST of Sed0026878 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 177.6 bits (449), Expect = 7.0e-45
Identity = 82/115 (71.30%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 22  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLFIFYLLTGHWLMSFFCVPCLYY 81
           +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL +FYLLTGHW M+  C+P LYY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLLFLSIFWLIYSALEDHD 137
           N  LY++++HLVDVTEIFN L WEKK+RLFKL Y+V  LFL+IFW+IYSAL+D++
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

[Close]

BLAST of Sed0026878 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 154.1 bits (388), Expect = 8.3e-38
Identity = 71/134 (52.99%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MADIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLF 60
           M D+  W++SF F+  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+L 
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  IFYLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLL 120
           ++Y+LTGHW M+   +P L+YNIRLY +++HL DVTE++N   WE+K+R++K+ ++   +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSIFWLIYSALED 135
           F++ +WLI+SAL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]

BLAST of Sed0026878 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-28
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 3   DIYAWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLFIF 62
           D++ W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG L + 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWLMSFFCVPCLYYNIRLYTQQKHLVDVTEIFNQLPWEKKQRLFKLVYLVFLLFL 122
           +LLT HW+     VP   Y+  LY ++++L+DVTE+F  + +EKK R  KL + VFL  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SIFWL----IYSALEDHD 137
            +F L    +YS  ED D
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

The following BLAST results are available for this feature:

BLAST of Sed0026878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532889.1	4.1e-63	93.38	protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 pr...	[more]
XP_022996131.1	9.1e-63	92.65	protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein corn...	[more]
XP_022957749.1	1.6e-62	91.91	protein cornichon homolog 4-like [Cucurbita moschata]	[more]
XP_038907022.1	1.0e-61	90.44	protein cornichon homolog 4-like [Benincasa hispida]	[more]
XP_004147569.1	1.3e-61	90.44	protein cornichon homolog 4 [Cucumis sativus] >KGN50189.1 hypothetical protein C...	[more]

BLAST of Sed0026878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W04	1.9e-50	69.85	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	4.0e-45	63.24	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q3EDD7	9.9e-44	71.30	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q9SZ74	1.2e-36	52.99	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q9C7D7	6.4e-27	44.93	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of Sed0026878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K131	4.4e-63	92.65	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491445 PE=...	[more]
A0A6J1H2W0	7.5e-63	91.91	protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459200 P...	[more]
A0A0A0KMS0	6.4e-62	90.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157960 PE=3 SV=1	[more]
A0A6J1E8A9	8.3e-62	91.91	protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430316 P...	[more]
A0A1S3ATW1	5.4e-61	88.97	protein cornichon homolog 4-like OS=Cucumis melo OX=3656 GN=LOC103482667 PE=3 SV...	[more]

BLAST of Sed0026878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12390.1	1.3e-51	69.85	Cornichon family protein	[more]
AT1G62880.1	2.8e-46	63.24	Cornichon family protein	[more]
AT1G12340.1	7.0e-45	71.30	Cornichon family protein	[more]
AT4G12090.1	8.3e-38	52.99	Cornichon family protein	[more]
AT3G12180.1	4.6e-28	44.93	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 4..125 e-value: 3.4E-56 score: 202.7
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 6..125 e-value: 5.5E-41 score: 139.7
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 1..135
None	No IPR available	PANTHER	PTHR12290:SF39	PROTEIN CORNICHON HOMOLOG 4-LIKE	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026878.1	Sed0026878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane