Sed0026635 (gene) Chayote v1

Overview


Name	Sed0026635
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein IDA
Location	LG07: 34810008 .. 34810307 (-)
RNA-Seq Expression	Sed0026635
Synteny	Sed0026635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTTCTTCTTTCAAATACAAACCCTTTTGTTTAAGCAACGCAGTCACCATTTTCGTTGTTGCTCTGCTTCTCCTTTCCGGGTTTTGCTCGGCAACTCGGCCGGGTAAGACGATGGGACCGGGGATGGATTCCGACGCGTCGAATTCTAACCAGCAAGACAATTTCAATTACAGGACGGGGTTCCGATATGTCGGCCAAACGTTCAGCTTTCTCCCCAGAGGCGTTCCCATCCCTCCTTCTGGCCCTTCCGACAGGCACAACTCTGTAGCTGACTCTGTTCCTCACACTTGA

mRNA sequence

ATGGCTTCTTCTTCTTCTTTCAAATACAAACCCTTTTGTTTAAGCAACGCAGTCACCATTTTCGTTGTTGCTCTGCTTCTCCTTTCCGGGTTTTGCTCGGCAACTCGGCCGGGTAAGACGATGGGACCGGGGATGGATTCCGACGCGTCGAATTCTAACCAGCAAGACAATTTCAATTACAGGACGGGGTTCCGATATGTCGGCCAAACGTTCAGCTTTCTCCCCAGAGGCGTTCCCATCCCTCCTTCTGGCCCTTCCGACAGGCACAACTCTGTAGCTGACTCTGTTCCTCACACTTGA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTTTCAAATACAAACCCTTTTGTTTAAGCAACGCAGTCACCATTTTCGTTGTTGCTCTGCTTCTCCTTTCCGGGTTTTGCTCGGCAACTCGGCCGGGTAAGACGATGGGACCGGGGATGGATTCCGACGCGTCGAATTCTAACCAGCAAGACAATTTCAATTACAGGACGGGGTTCCGATATGTCGGCCAAACGTTCAGCTTTCTCCCCAGAGGCGTTCCCATCCCTCCTTCTGGCCCTTCCGACAGGCACAACTCTGTAGCTGACTCTGTTCCTCACACTTGA

Protein sequence

MASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYRTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVPHT

Homology

[Close]

BLAST of Sed0026635 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNY 60
          M SSSS        S+   IFV+ LLL+SGFCSATRPGKTMG  +  D S      NFNY
Sbjct: 1  MLSSSSSSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLS------NFNY 60

Query: 61 RTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
          +TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+ DS+P
Sbjct: 61 KTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 91

[Close]

BLAST of Sed0026635 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 6.7e-23
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 15 SNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYRTGFRYVGQTFSFL 74
          S+   IFV+ LLL+SGFCSATRPGKTMG  +  D        NFNY+TGFRYVGQTFS+L
Sbjct: 10 SSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLL------NFNYKTGFRYVGQTFSYL 69

Query: 75 PRGVPIPPSGPSDRHNSVADSVP 98
          PRGVPIPPSGPSDRHNS+ DS+P
Sbjct: 70 PRGVPIPPSGPSDRHNSLVDSLP 86

[Close]

BLAST of Sed0026635 vs. NCBI nr
Match: KAG6574002.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 63/97 (64.95%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 1  MASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNY 60
          MASSSS        +N V I V+ALLLLSGFCSATRP K  GP MDS       Q   NY
Sbjct: 1  MASSSS--------NNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSG------QVGLNY 60

Query: 61 RTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
          +TGFRY G+TFSFLPR +PIPPS PSDRHNSV DSVP
Sbjct: 61 KTGFRYRGETFSFLPRNIPIPPSAPSDRHNSVVDSVP 83

[Close]

BLAST of Sed0026635 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 2  ASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYR 61
          +SSSSF++K     N++ IF++ LLLLSGF SATRPG TM      D SNSN +      
Sbjct: 13 SSSSSFQFK----QNSIPIFILLLLLLSGFSSATRPGGTM---EFPDMSNSNYK-----T 72

Query: 62 TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
          T FRY GQTF FLP+GVPIPPSGPSDRHNSV DS+P
Sbjct: 73 TAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLP 96

[Close]

BLAST of Sed0026635 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 2   ASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYR 61
           +SSSSF++K     N++ IF++ LLLLSGF SATRPG TM      D SNSN +      
Sbjct: 17  SSSSSFQFK----QNSIPIFILLLLLLSGFSSATRPGGTM---EFPDMSNSNYK-----T 76

Query: 62  TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
           T FRY GQTF FLP+GVPIPPSGPSDRHNSV DS+P
Sbjct: 77  TAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLP 100

[Close]

BLAST of Sed0026635 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-05
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 71 FSFLPRGVPIPPSGPSDRHNSVADSVPH 99
          F +LP+GVPIPPS PS RHNS  +S+PH
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNSLPH 77

[Close]

BLAST of Sed0026635 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 2   ASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYR 61
           +SSSSF++K     N++ IF++ LLLLSGF SATRPG TM      D SNSN +      
Sbjct: 17  SSSSSFQFK----QNSIPIFILLLLLLSGFSSATRPGGTM---EFPDMSNSNYK-----T 76

Query: 62  TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
           T FRY GQTF FLP+GVPIPPSGPSDRHNSV DS+P
Sbjct: 77  TAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLP 100

[Close]

BLAST of Sed0026635 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 2  ASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYR 61
          +SSSSF++K     N++ IF++ LLLLSGF SATRPG TM      D SNSN +      
Sbjct: 13 SSSSSFQFK----QNSIPIFILLLLLLSGFSSATRPGGTM---EFPDMSNSNYK-----T 72

Query: 62 TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
          T FRY GQTF FLP+GVPIPPSGPSDRHNSV DS+P
Sbjct: 73 TAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLP 96

[Close]

BLAST of Sed0026635 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 59/98 (60.20%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 1  MASSSSFKYKPFCLSNAVTIFVVALLLLSGFCSATRPGKTMG-PGMDSDASNSNQQDNFN 60
          M SSSS    P      + I ++ LLLLSG  SATRPGKTM    M+ D SNS       
Sbjct: 1  MPSSSSQTSIP------IFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS------- 60

Query: 61 YRTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
          Y+T FRY GQTFSFLP+GVPIPPSGPSDRHNSV DS+P
Sbjct: 61 YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLP 85

[Close]

BLAST of Sed0026635 vs. ExPASy TrEMBL
Match: A0A5N5H8T3 (Protein IDA OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_016015 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MASSSSFKYKPFCLSNAVTIFVVALL--LLSGFCSATRPGKTMGPGMDSDA-SNSNQQDN 60
           MAS+SS K K F  S   T+FVV L+  LL G C+ATR GKT+   +D  A  N +    
Sbjct: 1   MASTSSLKSKHFS-SGKNTVFVVLLVLNLLMGCCTATRLGKTLVVSLDGKALMNLDHTKT 60

Query: 61  FN---YRTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVP 98
           FN   + TGFRY GQ FS+ P+G  IPPSGPS RHNSV DS P
Sbjct: 61  FNPRKHETGFRYKGQIFSYFPKGTIIPPSGPSKRHNSVVDSTP 102

[Close]

BLAST of Sed0026635 vs. ExPASy TrEMBL
Match: A0A6J5TMQ2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS6935 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 3   SSSSFKYKPFCLSNAVTIFVVAL-LLLSGFCSATRPGKTM---GPGMDSDASNSNQQDNF 62
           +SSS K K F  S   T+FVV+L LLL+G CS  R GKT+    P +  +  ++   +  
Sbjct: 2   ASSSPKSKHFSCSCKTTMFVVSLILLLTGSCSGARLGKTVILADPKVLLNLEHTKTLNPR 61

Query: 63  NYRTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVADSVPH 99
            ++TGF+Y GQ FSF P+G PIPPSGPS RHNS  DS PH
Sbjct: 62  THQTGFQYRGQVFSFFPKGTPIPPSGPSKRHNSAVDSTPH 101

[Close]

BLAST of Sed0026635 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 71 FSFLPRGVPIPPSGPSDRHNSVADSVPH 99
          F +LP+GVPIPPS PS RHNS  +S+PH
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNSLPH 77

[Close]

BLAST of Sed0026635 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 25/81 (30.86%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 18 VTIFVVALLLLSGFCSATRPGKTMGPGMDSDASNSNQQDNFNYRTGFRYVGQTFSFLPRG 77
          +T+++V LL+   + +  R    +GP   S+      +       GF + G+ F    + 
Sbjct: 10 MTLYIVFLLIFGSYNATAR----IGPIKLSETEIVQTRSRQEIIGGFTFKGRVFHSFSKR 69

Query: 78 VPIPPSGPSDRHNSVADSVPH 99
          V +PPSGPS RHNSV +++ H
Sbjct: 70 VLVPPSGPSMRHNSVVNNLKH 86

The following BLAST results are available for this feature:

BLAST of Sed0026635 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601330.1	1.6e-24	65.98	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032113.1	6.7e-23	69.88	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6574002.1	1.6e-21	64.95	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0034518.1	2.0e-19	61.46	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	2.0e-19	61.46	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0026635 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	5.0e-05	67.86	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Sed0026635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCP4	9.7e-20	61.46	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	9.7e-20	61.46	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KR07	1.6e-17	60.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A5N5H8T3	2.7e-14	53.40	Protein IDA OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_016015 PE=...	[more]
A0A6J5TMQ2	6.1e-14	50.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS6935 PE=4 SV...	[more]

BLAST of Sed0026635 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	3.5e-06	67.86	Putative membrane lipoprotein	[more]
AT3G25655.1	1.1e-04	30.86	inflorescence deficient in abscission (IDA)-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..99
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 1..98
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026635.1	Sed0026635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0110165	cellular anatomical entity