Sed0026568 (gene) Chayote v1

Overview
NameSed0026568
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLoricrin
LocationLG03: 46308268 .. 46309622 (+)
RNA-Seq ExpressionSed0026568
SyntenySed0026568
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTTCAGTTATCACAGAGAAAGCAAAATCATGGAAGCAATTCCACCAAATTGGCGCCACCTGCCCCTGTTCATCACTTTGTTCATTCCCTCAAACAATTTCCCTTCTGATTCTCACACTCAACAACAAAAAACCCACTTTCAAATTCCCACAAATTCATTCCAAAATCCCCATTTCATCCCTTCAAATTGGGGGTTTTCATTTCTGTATGATAGAATCAAGGCAAGCCCAGAACGGTATAATCTCAGATGATGGAAAAATGGCGATGGGGAAAAAGGGTTTTCGAAAGGTTAAGCAGATGATGTTCTATCCATTTCGAATGGCCAAGAAACAGATTCTGAGGCCGAAGATTAAAAGGGTTTTTTCTTCTTCGATTAAAAGGGGTTTTGATGGGAGTGTAAGATATCAAGGTTGTGGTTTCTGTTTGCCCGAACTTTGTATTTCAGATTCTAAAAATGGGTCTCCTCCAACTGACCCAAATCACCGCAACTTCACTGAAGAAATGTTGAGAGTTCTCATTCAGAACAATGATTTCTATTCCAAACAATCCAATCCTCATTTGGGTATGTTTTTCTTTCTTTCTTCTTCTTAATTCAAGTTAATACATGAGTTTTCTAGAAATTTCCTTGACATCCAAATGTTGTAGGTTTATACAATATGTACTATGGTAATACTCGAGGTATGCATAAGGATAACAATGATATGTGTTTGCAACTATCATCGAGTGGTCCCCAAGGGGCGGCATAGTGGTTGAAGACTTGGGCTTTGAGAGTATGCTCCCCTCAAGGTCTTAGGTTCGAGACTCACTTGTGACATTACTCCTTCGATGTCTCCAGTGCCTGGCCTAAGGACCGGCGTGGTAACCCTTGTTTTAAAAAAAAAAAATACTATCATCGAGTGACCTAATAGTCAAGAAGACTTTAAGTAATGGGTTCAATCTATGATGAACACCTACCTAAAAATTAATTTCCTATGAACTTCTTTGACATCCGAATGTTATAGAGTCAGACGTTATATCCCATGACATTATTCGAGGTGCGCACAAGCTAATCTGGACAATCATGGATATCAAACAAGTTAATAGATGATATTTGTTTGTAACTATCATCGAGTGGCCTAATAGTCAAGAAAGGCTAAGGTGATGATATTCATGATGACCACCTACTTAGTAATTAATTTTCTACGAGTTTCTTTGACATCCAAATTTTGCTGGATAAGATGGTAGTCGAGGCATGCGTAAGCTAATTTGGACACTTATCATCATCAATATATAAAAAAAAAAAGATATGTGTTATGTAGTTTAATTATATTGCTGTGGTTCTTATTGGCAGGTGTTTAAGTGAACGCTAGGAAG

mRNA sequence

TTTGTTCAGTTATCACAGAGAAAGCAAAATCATGGAAGCAATTCCACCAAATTGGCGCCACCTGCCCCTGTTCATCACTTTGTTCATTCCCTCAAACAATTTCCCTTCTGATTCTCACACTCAACAACAAAAAACCCACTTTCAAATTCCCACAAATTCATTCCAAAATCCCCATTTCATCCCTTCAAATTGGGGGTTTTCATTTCTGTATGATAGAATCAAGGCAAGCCCAGAACGGTATAATCTCAGATGATGGAAAAATGGCGATGGGGAAAAAGGGTTTTCGAAAGGTTAAGCAGATGATGTTCTATCCATTTCGAATGGCCAAGAAACAGATTCTGAGGCCGAAGATTAAAAGGGTTTTTTCTTCTTCGATTAAAAGGGGTTTTGATGGGAGTGTAAGATATCAAGGTTGTGGTTTCTGTTTGCCCGAACTTTGTATTTCAGATTCTAAAAATGGGTCTCCTCCAACTGACCCAAATCACCGCAACTTCACTGAAGAAATGTTGAGAGTTCTCATTCAGAACAATGATTTCTATTCCAAACAATCCAATCCTCATTTGGGTGTTTAAGTGAACGCTAGGAAG

Coding sequence (CDS)

ATGATAGAATCAAGGCAAGCCCAGAACGGTATAATCTCAGATGATGGAAAAATGGCGATGGGGAAAAAGGGTTTTCGAAAGGTTAAGCAGATGATGTTCTATCCATTTCGAATGGCCAAGAAACAGATTCTGAGGCCGAAGATTAAAAGGGTTTTTTCTTCTTCGATTAAAAGGGGTTTTGATGGGAGTGTAAGATATCAAGGTTGTGGTTTCTGTTTGCCCGAACTTTGTATTTCAGATTCTAAAAATGGGTCTCCTCCAACTGACCCAAATCACCGCAACTTCACTGAAGAAATGTTGAGAGTTCTCATTCAGAACAATGATTTCTATTCCAAACAATCCAATCCTCATTTGGGTGTTTAA

Protein sequence

MIESRQAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSIKRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHLGV
Homology
BLAST of Sed0026568 vs. NCBI nr
Match: XP_011648888.1 (uncharacterized protein LOC101216013 [Cucumis sativus] >XP_031736788.1 uncharacterized protein LOC101216013 [Cucumis sativus] >KGN61038.1 hypothetical protein Csa_021211 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 83/130 (63.85%), Postives = 92/130 (70.77%), Query Frame = 0

Query: 6   QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKR-----VFSSSI---- 65
           Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR       SSS+    
Sbjct: 38  QIRDDEFDDDRKMEMGKKGFGKAKQVMFYPFRKAKKQILRRRIKRDSSCSSSSSSVTCSR 97

Query: 66  ------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFY 121
                 KRGFDGSV  QGCGFCL +L ISDSKNGS PTDPNHR FT EML+VLI+ NDFY
Sbjct: 98  RTNSLDKRGFDGSVN-QGCGFCLTKLSISDSKNGS-PTDPNHRKFTNEMLKVLIEKNDFY 157

BLAST of Sed0026568 vs. NCBI nr
Match: XP_008452984.1 (PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 83/136 (61.03%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 6   QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI--------- 65
           Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR  S S          
Sbjct: 38  QIRDDEFDDDRKMEMGKKGFGKAKQVMFYPFRKAKKQILRRRIKRGSSCSSSSPCSSSSP 97

Query: 66  ------------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLI 121
                       KRGFDGSV  QGCGFCL +L ISDSKNGS PTDPNHR FT EML+VLI
Sbjct: 98  SVICSRRTNSLDKRGFDGSVN-QGCGFCLTKLSISDSKNGS-PTDPNHRKFTNEMLKVLI 157

BLAST of Sed0026568 vs. NCBI nr
Match: XP_038890967.1 (uncharacterized protein LOC120080390 [Benincasa hispida] >XP_038890968.1 uncharacterized protein LOC120080390 [Benincasa hispida] >XP_038890969.1 uncharacterized protein LOC120080390 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 81/129 (62.79%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 6   QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIK--------------RV 65
           Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IK              R 
Sbjct: 38  QIRHDEFDDDRKMEMGKKGFGKAKQVMFYPFRKAKKQILRRRIKSASSSCSSSSVTCTRK 97

Query: 66  FSSSIKRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYS 121
            +SS KRGFDGSV  QGCGFC  +L ISDSKNGS PTDPN+R FT EML+VLI+ NDFYS
Sbjct: 98  TNSSDKRGFDGSVN-QGCGFCFTKLSISDSKNGS-PTDPNNRKFTNEMLKVLIEKNDFYS 157

BLAST of Sed0026568 vs. NCBI nr
Match: KAG7020835.1 (hypothetical protein SDJN02_17523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 77/119 (64.71%), Postives = 87/119 (73.11%), Query Frame = 0

Query: 14  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV--FSSSI----------KRGFD 73
           DDGKM +GKKGF K KQ+MFYPFR AKKQILR +IKR    SSSI          K  +D
Sbjct: 50  DDGKMEIGKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYD 109

Query: 74  GSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHLGV 121
            SV  QGCGFC  +  ISDSKNGS PTDPNH  FT+EML+VLI+ NDFYSK+SNPHLG+
Sbjct: 110 ASVN-QGCGFCFAKHSISDSKNGS-PTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 166

BLAST of Sed0026568 vs. NCBI nr
Match: XP_022969627.1 (uncharacterized protein LOC111468598 [Cucurbita maxima])

HSP 1 Score: 134.4 bits (337), Expect = 6.4e-28
Identity = 76/121 (62.81%), Postives = 84/121 (69.42%), Query Frame = 0

Query: 14  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV------FSSSI----------K 73
           DDGKM +GKKGF K KQ+MFYPFR AKKQILR +IKR        SSSI          K
Sbjct: 51  DDGKMEIGKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSCSSSIFSITRTNSWDK 110

Query: 74  RGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPH 119
             +D SV  QGCGFC  +  ISDSKNGS PTDPNH  FT EML+VLI+ NDFYSK+SNPH
Sbjct: 111 SVYDASVN-QGCGFCFAKHSISDSKNGS-PTDPNHPKFTNEMLKVLIEKNDFYSKESNPH 169

BLAST of Sed0026568 vs. ExPASy TrEMBL
Match: A0A0A0LH19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.3e-33
Identity = 83/130 (63.85%), Postives = 92/130 (70.77%), Query Frame = 0

Query: 6   QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKR-----VFSSSI---- 65
           Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR       SSS+    
Sbjct: 38  QIRDDEFDDDRKMEMGKKGFGKAKQVMFYPFRKAKKQILRRRIKRDSSCSSSSSSVTCSR 97

Query: 66  ------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFY 121
                 KRGFDGSV  QGCGFCL +L ISDSKNGS PTDPNHR FT EML+VLI+ NDFY
Sbjct: 98  RTNSLDKRGFDGSVN-QGCGFCLTKLSISDSKNGS-PTDPNHRKFTNEMLKVLIEKNDFY 157

BLAST of Sed0026568 vs. ExPASy TrEMBL
Match: A0A1S3BWA1 (uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 83/136 (61.03%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 6   QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI--------- 65
           Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR  S S          
Sbjct: 38  QIRDDEFDDDRKMEMGKKGFGKAKQVMFYPFRKAKKQILRRRIKRGSSCSSSSPCSSSSP 97

Query: 66  ------------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLI 121
                       KRGFDGSV  QGCGFCL +L ISDSKNGS PTDPNHR FT EML+VLI
Sbjct: 98  SVICSRRTNSLDKRGFDGSVN-QGCGFCLTKLSISDSKNGS-PTDPNHRKFTNEMLKVLI 157

BLAST of Sed0026568 vs. ExPASy TrEMBL
Match: A0A6J1FAJ4 (uncharacterized protein LOC111443901 OS=Cucurbita moschata OX=3662 GN=LOC111443901 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.1e-28
Identity = 75/117 (64.10%), Postives = 84/117 (71.79%), Query Frame = 0

Query: 14  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV--FSSSI----------KRGFD 73
           DDGK  +GKKGF K KQ+MFYPFR AKKQILR +IKR    SSSI          K  +D
Sbjct: 51  DDGKTEIGKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYD 110

Query: 74  GSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHL 119
            SV  QGCGFC  +  ISDSKNGS PTDPNH  FT+EML+VLI+ NDFYSK+SNPHL
Sbjct: 111 ASVN-QGCGFCFAKHSISDSKNGS-PTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165

BLAST of Sed0026568 vs. ExPASy TrEMBL
Match: A0A6J1HWU1 (uncharacterized protein LOC111468598 OS=Cucurbita maxima OX=3661 GN=LOC111468598 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.1e-28
Identity = 76/121 (62.81%), Postives = 84/121 (69.42%), Query Frame = 0

Query: 14  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV------FSSSI----------K 73
           DDGKM +GKKGF K KQ+MFYPFR AKKQILR +IKR        SSSI          K
Sbjct: 51  DDGKMEIGKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSCSSSIFSITRTNSWDK 110

Query: 74  RGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPH 119
             +D SV  QGCGFC  +  ISDSKNGS PTDPNH  FT EML+VLI+ NDFYSK+SNPH
Sbjct: 111 SVYDASVN-QGCGFCFAKHSISDSKNGS-PTDPNHPKFTNEMLKVLIEKNDFYSKESNPH 169

BLAST of Sed0026568 vs. ExPASy TrEMBL
Match: A0A6J1DRZ8 (uncharacterized protein LOC111023307 OS=Momordica charantia OX=3673 GN=LOC111023307 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 73/115 (63.48%), Postives = 82/115 (71.30%), Query Frame = 0

Query: 14  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI----------KRGFDGS 73
           DDGK   GK+GF K KQ++ YPFR AKKQILR KIKR  SSS           KR  DGS
Sbjct: 45  DDGKKHKGKRGFGKAKQVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGS 104

Query: 74  VRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHL 119
           V  QGCGFC  EL ISDSKNGS  TDPN+R FT+EML++LI+ NDFYSK+ NPHL
Sbjct: 105 VN-QGCGFCFKEL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 157

BLAST of Sed0026568 vs. TAIR 10
Match: AT5G26720.1 (unknown protein; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.6e-06
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 80  DSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPH 118
           DS   SP +DPN   F+ EMLRV+++ NDF S + NPH
Sbjct: 96  DSSVSSPVSDPNDERFSHEMLRVMLETNDFCSDECNPH 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011648888.11.9e-3263.85uncharacterized protein LOC101216013 [Cucumis sativus] >XP_031736788.1 uncharact... [more]
XP_008452984.13.3e-3261.03PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo][more]
XP_038890967.15.6e-3262.79uncharacterized protein LOC120080390 [Benincasa hispida] >XP_038890968.1 unchara... [more]
KAG7020835.18.9e-3064.71hypothetical protein SDJN02_17523, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022969627.16.4e-2862.81uncharacterized protein LOC111468598 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LH199.3e-3363.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1[more]
A0A1S3BWA11.6e-3261.03uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=... [more]
A0A6J1FAJ43.1e-2864.10uncharacterized protein LOC111443901 OS=Cucurbita moschata OX=3662 GN=LOC1114439... [more]
A0A6J1HWU13.1e-2862.81uncharacterized protein LOC111468598 OS=Cucurbita maxima OX=3661 GN=LOC111468598... [more]
A0A6J1DRZ85.3e-2863.48uncharacterized protein LOC111023307 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
AT5G26720.15.6e-0652.63unknown protein; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35123OS07G0633900 PROTEIN-RELATEDcoord: 7..118
NoneNo IPR availablePANTHERPTHR35123:SF2UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEINcoord: 7..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026568.1Sed0026568.1mRNA