Sed0025199 (gene) Chayote v1

Overview


Name	Sed0025199
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase MARCH8-like
Location	LG06: 104718 .. 106349 (+)
RNA-Seq Expression	Sed0025199
Synteny	Sed0025199

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATTTTAAAAATTATGCTACAAATATAATACAAGAGGTAGAATATGCCGCTGACGGTAAATTCTCTAATATTAATGTTGATGAAACTTATCATCTGGTGAATGTGGACCAACCGCAATGTCGGATATGCCTTGACACCGAAAGTTTTTAACATTCCTTTGTGTTCAATATGTTATGAAATTTCATTAACATCTGTTAAAGCAGTGTTTCTCGTCCGTTTTTAACAAATAATTTTGTCTTAATAATTAATTGTGGGTTAAGATTGTCAATACATATGCATATATTCTGTTTTTCTTTTCTTCCGAAGCTTTTGGTTACCTTTTTTTAGTAGTAATAAGAATTAGCTTTGAGGCGAAGATTTAATTGCTTCATGCTACTGCAAAGGCACTCAAATCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGCCCACAAATGATATGGTAGAGTGGTTGTCCTCAAATGGCGGGGCAGTGGTTCAAGACTTGGGCTTTGAGGGTATGCTCCCCTTAAGGTCCTGAGTTCAAGTCTCTCTTGTGACATTATTCCTTCGATGTCTCCGGTGCTAAGAACACGTAAAATAATAATGTTTTCAAGGTTTCTTGACTTCTAATCAATTTCAGTAATTCTGTCAGGAGGGCTTTGCTTTTGTTCATTCTTCAAAGTGCAAAGCTATGTTTGTGCTACGCGCAAATGTCCTTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAGTTTCCGTTGCTAGGGACCATGCGTTCATTTTGATCATTGTTTTGTCTTGTAATTATATGTTCATCAACATTTTGTTCATACACGTGTCAAGGTGTTCCATTCAAATTTTGGCCAAATTTTCTTCATTACTATTATTATGATGAATTCATTTCATTGTTATGATTGATTTTTCTAAATAGGTCTTGGCTATGTGCTTTGAACAGATTGTGGCATTCTTGGGGTGTTGGTGTACAAGTTCTACGGGGAGGAACCAAGGGAAATGTTTGGTTACGAAGAACACTCCTATGGGTTCTATGCCATGGCTGGTATACTAAGGCTGCCGACTAACTCCTTACTTTTATTCTTCTTTACATATGTATTGCATTTGTTAGTGTAAGTGAACATGATCACAGCTTTTTGTTTCTTTTGATTCGTCGAGTATAGGGTTTTCTGTTGAATGAATTCAATCACCTGCTTTATAAAATGTAGTTTCTATATTATCTAGCTTTTTAATCCTTCGTTCTATAACTTATTTTCTGCAGTCTTGGCTATCATCTTGGTTGGTTTACTATATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAATTGACAAAGGTCCATAACCCCCACCGCCCCACCCTCTTTATCTAGTCAGTTGTTGTCTATCTTTGTGTTTACTAATTGGCATGTATATTTTTCTTAGATGTTGGAGGTTCAAATCTCCATATCCTTATTTGTCCTACTAAAAAAAGATAACTTTATATATTATATTTCAGGAATATATAGTCGAAGATCGTGAACAAAACAAAAATGTTCTTGAACTGGATCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTGA

mRNA sequence

ATGAATTATTTTAAAAATTATGCTACAAATATAATACAAGAGGTAGAATATGCCGCTGACGGTAAATTCTCTAATATTAATGTTGATGAAACTTATCATCTGGTGAATGTGGACCAACCGCAATGTCGGATATGCCTTGACACCGAAAAATTAGCTTTGAGGCGAAGATTTAATTGCTTCATGCTACTGCAAAGGCACTCAAATCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGCCCACAAATGATATGGAGGGCTTTGCTTTTGTTCATTCTTCAAAGTGCAAAGCTATGTTTGTGCTACGCGCAAATGTCCTTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAGTTTCCGTTGCTAGGGACCATGCATTGTGGCATTCTTGGGGTGTTGGTGTACAAGTTCTACGGGGAGGAACCAAGGGAAATGTTTGGTTACGAAGAACACTCCTATGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGTTTACTATATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAATTGACAAAGGAATATATAGTCGAAGATCGTGAACAAAACAAAAATGTTCTTGAACTGGATCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTGA

Coding sequence (CDS)

ATGAATTATTTTAAAAATTATGCTACAAATATAATACAAGAGGTAGAATATGCCGCTGACGGTAAATTCTCTAATATTAATGTTGATGAAACTTATCATCTGGTGAATGTGGACCAACCGCAATGTCGGATATGCCTTGACACCGAAAAATTAGCTTTGAGGCGAAGATTTAATTGCTTCATGCTACTGCAAAGGCACTCAAATCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGCCCACAAATGATATGGAGGGCTTTGCTTTTGTTCATTCTTCAAAGTGCAAAGCTATGTTTGTGCTACGCGCAAATGTCCTTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAGTTTCCGTTGCTAGGGACCATGCATTGTGGCATTCTTGGGGTGTTGGTGTACAAGTTCTACGGGGAGGAACCAAGGGAAATGTTTGGTTACGAAGAACACTCCTATGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGTTTACTATATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAATTGACAAAGGAATATATAGTCGAAGATCGTGAACAAAACAAAAATGTTCTTGAACTGGATCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTGA

Protein sequence

MNYFKNYATNIIQEVEYAADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLDNWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGILGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY

Homology

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BLAST of Sed0025199 vs. NCBI nr
Match: XP_022980694.1 (E3 ubiquitin-protein ligase MARCH8-like [Cucurbita maxima] >XP_022980695.1 E3 ubiquitin-protein ligase MARCH8-like [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-80
Identity = 164/220 (74.55%), Postives = 171/220 (77.73%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 49  SDDDLHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 108

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 109 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 168

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 169 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 228

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDREQNKNV ELDPSHVMELRMLGLY
Sbjct: 229 HVLAKQELTKEYIVEDREQNKNVPELDPSHVMELRMLGLY 259

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BLAST of Sed0025199 vs. NCBI nr
Match: KAG6581761.1 (E3 ubiquitin-protein ligase MARCHF8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-79
Identity = 163/220 (74.09%), Postives = 170/220 (77.27%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 23  SDDDSHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 82

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 83  NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 142

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 143 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 202

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 203 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 233

[Close]

BLAST of Sed0025199 vs. NCBI nr
Match: XP_023527023.1 (E3 ubiquitin-protein ligase MARCH1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-79
Identity = 163/220 (74.09%), Postives = 170/220 (77.27%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 49  SDDDSHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 108

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 109 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 168

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 169 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 228

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 229 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259

[Close]

BLAST of Sed0025199 vs. NCBI nr
Match: XP_038884103.1 (E3 ubiquitin-protein ligase MARCHF8 [Benincasa hispida] >XP_038884112.1 E3 ubiquitin-protein ligase MARCHF8 [Benincasa hispida])

HSP 1 Score: 306.2 bits (783), Expect = 2.3e-79
Identity = 162/220 (73.64%), Postives = 170/220 (77.27%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 52  SDDDLHNLNVDETCHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 111

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 112 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 171

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 172 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 231

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVED+E NKNV ELDPSHVMELRMLGLY
Sbjct: 232 HVLAKQELTKEYIVEDQEHNKNVPELDPSHVMELRMLGLY 262

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BLAST of Sed0025199 vs. NCBI nr
Match: XP_022956176.1 (E3 ubiquitin-protein ligase MARCH1-like [Cucurbita moschata] >XP_022956177.1 E3 ubiquitin-protein ligase MARCH1-like [Cucurbita moschata] >XP_022956178.1 E3 ubiquitin-protein ligase MARCH1-like [Cucurbita moschata])

HSP 1 Score: 303.9 bits (777), Expect = 1.2e-78
Identity = 162/220 (73.64%), Postives = 169/220 (76.82%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 49  SDDDSHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 108

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV  DRWWLRLKFQF L+   H  I        
Sbjct: 109 NWRSTK--EGFAFAHCTECRAMFVLRANVPSDRWWLRLKFQF-LVARDHAFIFIIVQLIV 168

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 169 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 228

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 229 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259

[Close]

BLAST of Sed0025199 vs. ExPASy TrEMBL
Match: A0A6J1IX90 (E3 ubiquitin-protein ligase MARCH8-like OS=Cucurbita maxima OX=3661 GN=LOC111479989 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.0e-80
Identity = 164/220 (74.55%), Postives = 171/220 (77.73%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 49  SDDDLHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 108

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 109 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 168

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 169 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 228

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDREQNKNV ELDPSHVMELRMLGLY
Sbjct: 229 HVLAKQELTKEYIVEDREQNKNVPELDPSHVMELRMLGLY 259

[Close]

BLAST of Sed0025199 vs. ExPASy TrEMBL
Match: A0A6J1GVL5 (E3 ubiquitin-protein ligase MARCH1-like OS=Cucurbita moschata OX=3662 GN=LOC111457949 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 5.6e-79
Identity = 162/220 (73.64%), Postives = 169/220 (76.82%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+NVDET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 49  SDDDSHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 108

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV  DRWWLRLKFQF L+   H  I        
Sbjct: 109 NWRSTK--EGFAFAHCTECRAMFVLRANVPSDRWWLRLKFQF-LVARDHAFIFIIVQLIV 168

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 169 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 228

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 229 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259

[Close]

BLAST of Sed0025199 vs. ExPASy TrEMBL
Match: A0A1S3CN40 (E3 ubiquitin-protein ligase MARCH8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502787 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-78
Identity = 162/220 (73.64%), Postives = 170/220 (77.27%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+N+DET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 52  SDDDLHNLNIDETCHLVN-DQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 111

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 112 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 171

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 172 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 231

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 232 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 261

[Close]

BLAST of Sed0025199 vs. ExPASy TrEMBL
Match: A0A6J1D3J3 (E3 ubiquitin-protein ligase MARCH8 OS=Momordica charantia OX=3673 GN=LOC111016951 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-78
Identity = 160/220 (72.73%), Postives = 169/220 (76.82%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N++VDET HLVN DQPQCRICL+T    L    +C         QKYVHR CLD
Sbjct: 49  SDDDLQNLHVDETSHLVNADQPQCRICLETGGEDLIAPCHC------RGTQKYVHRLCLD 108

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 109 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 168

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 169 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 228

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 229 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259

[Close]

BLAST of Sed0025199 vs. ExPASy TrEMBL
Match: A0A5A7VT08 (E3 ubiquitin-protein ligase MARCH8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001850 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-78
Identity = 162/220 (73.64%), Postives = 170/220 (77.27%), Query Frame = 0


Query: 19  ADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 78
           +D    N+N+DET HLVN DQPQCRICLDT    L    +C         QKYVHRSCLD
Sbjct: 52  SDDDLHNLNIDETCHLVN-DQPQCRICLDTGGEDLIAPCHC------KGTQKYVHRSCLD 111

Query: 79  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI-------- 138
           NWR T   EGFAF H ++C+AMFVLRANV PDRWWLRLKFQF L+   H  I        
Sbjct: 112 NWRSTK--EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQF-LVARDHAFIFIIVQLIV 171

Query: 139 --LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 198
             LGVLVYKFYGEE REMFGYEEH YGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY
Sbjct: 172 AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHY 231

Query: 199 HVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           HVLAKQELTKEYIVEDRE NKNV ELDPSHVMELRMLGLY
Sbjct: 232 HVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 261

[Close]

BLAST of Sed0025199 vs. TAIR 10
Match: AT1G50440.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.4e-69
Identity = 144/224 (64.29%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 15  VEYAADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHR 74
           VE     + +  + DET  LV+ DQPQCRICLD     L    NC         QK+VHR
Sbjct: 37  VEEGQVSEIAETDDDETTLLVSGDQPQCRICLDVGGEDLIAPCNC------KGTQKHVHR 96

Query: 75  SCLDNWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI---- 134
           SCLDNWR T   EGFAF H ++C+A F LRANV  DRWWLRL+FQ  L+   H  I    
Sbjct: 97  SCLDNWRSTK--EGFAFSHCTECRAFFKLRANVPADRWWLRLRFQL-LVARDHAFIFISV 156

Query: 135 ------LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRIN 194
                 LG+LVYKFYGEE REMFGYEEH YGFY +AVLAI+LVGLLYGFFIAIICGQ+IN
Sbjct: 157 QMIVAFLGLLVYKFYGEELREMFGYEEHPYGFYTLAVLAIVLVGLLYGFFIAIICGQKIN 216

Query: 195 ERHYHVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           ERHYHVLAKQELTKEYIVEDR+  KNV ELD SHVMEL+MLGLY
Sbjct: 217 ERHYHVLAKQELTKEYIVEDRD-CKNVPELDQSHVMELKMLGLY 250

[Close]

BLAST of Sed0025199 vs. TAIR 10
Match: AT1G50440.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.4e-69
Identity = 144/224 (64.29%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 15  VEYAADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHR 74
           VE     + +  + DET  LV+ DQPQCRICLD     L    NC         QK+VHR
Sbjct: 37  VEEGQVSEIAETDDDETTLLVSGDQPQCRICLDVGGEDLIAPCNC------KGTQKHVHR 96

Query: 75  SCLDNWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI---- 134
           SCLDNWR T   EGFAF H ++C+A F LRANV  DRWWLRL+FQ  L+   H  I    
Sbjct: 97  SCLDNWRSTK--EGFAFSHCTECRAFFKLRANVPADRWWLRLRFQL-LVARDHAFIFISV 156

Query: 135 ------LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRIN 194
                 LG+LVYKFYGEE REMFGYEEH YGFY +AVLAI+LVGLLYGFFIAIICGQ+IN
Sbjct: 157 QMIVAFLGLLVYKFYGEELREMFGYEEHPYGFYTLAVLAIVLVGLLYGFFIAIICGQKIN 216

Query: 195 ERHYHVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           ERHYHVLAKQELTKEYIVEDR+  KNV ELD SHVMEL+MLGLY
Sbjct: 217 ERHYHVLAKQELTKEYIVEDRD-CKNVPELDQSHVMELKMLGLY 250

[Close]

BLAST of Sed0025199 vs. TAIR 10
Match: AT1G50440.3 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.4e-69
Identity = 144/224 (64.29%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 15  VEYAADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHR 74
           VE     + +  + DET  LV+ DQPQCRICLD     L    NC         QK+VHR
Sbjct: 37  VEEGQVSEIAETDDDETTLLVSGDQPQCRICLDVGGEDLIAPCNC------KGTQKHVHR 96

Query: 75  SCLDNWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGI---- 134
           SCLDNWR T   EGFAF H ++C+A F LRANV  DRWWLRL+FQ  L+   H  I    
Sbjct: 97  SCLDNWRSTK--EGFAFSHCTECRAFFKLRANVPADRWWLRLRFQL-LVARDHAFIFISV 156

Query: 135 ------LGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRIN 194
                 LG+LVYKFYGEE REMFGYEEH YGFY +AVLAI+LVGLLYGFFIAIICGQ+IN
Sbjct: 157 QMIVAFLGLLVYKFYGEELREMFGYEEHPYGFYTLAVLAIVLVGLLYGFFIAIICGQKIN 216

Query: 195 ERHYHVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 229
           ERHYHVLAKQELTKEYIVEDR+  KNV ELD SHVMEL+MLGLY
Sbjct: 217 ERHYHVLAKQELTKEYIVEDRD-CKNVPELDQSHVMELKMLGLY 250

[Close]

BLAST of Sed0025199 vs. TAIR 10
Match: AT1G11020.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-19
Identity = 85/286 (29.72%), Postives = 117/286 (40.91%), Query Frame = 0


Query: 21  GKFSNINVDETYHLVNVDQPQCRICL--DTEKLALRRRFNCFMLLQRHSNQKYVHRSCLD 80
           G    I  +E         P CRICL  D+E L       C         Q++VHRSCLD
Sbjct: 42  GNSDEIKAEEDLENDASSAPCCRICLEDDSELLGDELISPCMC----KGTQQFVHRSCLD 101

Query: 81  NWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDR--W------------------------ 140
           +WR     EGFAF H + CKA F LR     D   W                        
Sbjct: 102 HWRSVK--EGFAFSHCTTCKAQFHLRVEPFEDNNSWRRKAKFRLFVARDVLLVFLAVQTV 161

Query: 141 ------------------------WLRLKFQFPL-----LGTMH----CGILGVLVY--K 200
                                   W R+  + P+     +G +      G LG++++   
Sbjct: 162 IAVMAGFAYMMDKDGEFRNSFNDDWDRILSKHPIPFYYCIGVISFFVLTGFLGIILHCSA 221

Query: 201 FYGEEPREMFGYEEHSYGF-------------YAMAVLAII---LVGLLYGFFIAIICGQ 228
             G +PR M G +   YG+             +A+ V+ ++   ++GL YGF  A +  Q
Sbjct: 222 LNGNDPR-MAGCQNCCYGWGVLDCFPASMEACFALVVVFVVIFAILGLAYGFLAATMAIQ 281

[Close]

BLAST of Sed0025199 vs. TAIR 10
Match: AT2G22120.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-16
Identity = 77/301 (25.58%), Postives = 108/301 (35.88%), Query Frame = 0


Query: 38  DQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLDNWRPTNDMEGFAFVHSSKC 97
           +Q QCRICL+T+         C          KYVHR CLD+WR     EGFAF H + C
Sbjct: 31  EQIQCRICLETDGRDFIAPCKC------KGTSKYVHRDCLDHWRAIK--EGFAFAHCTTC 90

Query: 98  KAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGILGV------LVYKFYGEEP------RE 157
           KA + LR +   DR W  LKF+F +   +    L V      L Y  Y  +       R 
Sbjct: 91  KAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFIDSYQQSWLRH 150

Query: 158 MFGYEEHSYGFY------------------------------------------------ 217
           ++G++     +Y                                                
Sbjct: 151 IWGFDSEVTFYYMCGALLFFALLGLSGCVITCYDRRVRNDLAQPCRELCLCCCQPGICTD 210

Query: 218 ---------------------------------------------AMAVLAII-LVGLLY 228
                                                        A+ +L +  ++G+ Y
Sbjct: 211 CHLPGTICMWADCTACTEGCASAVSECGGCLGGAGEAGLPLLFITALVILGLFTVIGIFY 270

The following BLAST results are available for this feature:

BLAST of Sed0025199 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980694.1	2.1e-80	74.55	E3 ubiquitin-protein ligase MARCH8-like [Cucurbita maxima] >XP_022980695.1 E3 ub...	[more]
KAG6581761.1	1.4e-79	74.09	E3 ubiquitin-protein ligase MARCHF8, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023527023.1	1.4e-79	74.09	E3 ubiquitin-protein ligase MARCH1 [Cucurbita pepo subsp. pepo]	[more]
XP_038884103.1	2.3e-79	73.64	E3 ubiquitin-protein ligase MARCHF8 [Benincasa hispida] >XP_038884112.1 E3 ubiqu...	[more]
XP_022956176.1	1.2e-78	73.64	E3 ubiquitin-protein ligase MARCH1-like [Cucurbita moschata] >XP_022956177.1 E3 ...	[more]

BLAST of Sed0025199 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025199 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IX90	1.0e-80	74.55	E3 ubiquitin-protein ligase MARCH8-like OS=Cucurbita maxima OX=3661 GN=LOC111479...	[more]
A0A6J1GVL5	5.6e-79	73.64	E3 ubiquitin-protein ligase MARCH1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3CN40	1.3e-78	73.64	E3 ubiquitin-protein ligase MARCH8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1D3J3	1.3e-78	72.73	E3 ubiquitin-protein ligase MARCH8 OS=Momordica charantia OX=3673 GN=LOC11101695...	[more]
A0A5A7VT08	1.3e-78	73.64	E3 ubiquitin-protein ligase MARCH8 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Sed0025199 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50440.1	1.4e-69	64.29	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G50440.2	1.4e-69	64.29	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G50440.3	1.4e-69	64.29	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G11020.1	3.8e-19	29.72	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G22120.1	5.1e-16	25.58	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 36..102 e-value: 2.7E-6 score: 29.1
None	No IPR available	PANTHER	PTHR46347:SF2	OS02G0132300 PROTEIN	coord: 21..227
None	No IPR available	PANTHER	PTHR46347	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	coord: 21..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025199.1	Sed0025199.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane