Sed0025185 (gene) Chayote v1

Overview


Name	Sed0025185
Type	gene
Organism	Sechium edule (Chayote v1)
Description	COX assembly mitochondrial protein
Location	LG03: 1966532 .. 1969257 (-)
RNA-Seq Expression	Sed0025185
Synteny	Sed0025185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGATTTAGGGTTTTGGTTCGATCAATCTTGGAGGAAAAAAAACTAGAAGGTGAAAACTGGGGAGTTGGCATTTGACCTCGAATTCCCGATTCTGTATTGCGCTCCGAGATGGGATACTTACAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGGTATTTGATCGATTCTCGTTCTCTACATCTTTAATCTGATTTTGATCGCTGATGAACTCGATGGATCGATTCAATTTTGTAGAATCTGTTAGAAATCTGCTGATGGTTTTTGTGCATTTCCAGCTTTGCGTAGTAAGATGAAGCAGAAGGCGATGAAGGAGTGCGATCATTACGCTTCAAGATATGCCGAATGCGCCTACGGCAGAACGTTATCCGTCGTGTTTAAGTGTCGCAACCAAGCTAAAGAATTGAACACTTGCCTTCACCAATAGTGAGTATTGGTTATTTTGTTTGGCTTTTCGATTGCTATGTTATGTCTCAGCTTCGTTTTATTCGGAGTGTTCTGCTTCTCTTCTGTTCATAACAATGTGTACGATCATCGTTTCTCAGTGGTAGTAATTAGTAAGTTTAGGTGCTGGGTGTGAAACCAGAAATCAAGAATGGATCAAATTTTGAATGGATCGAGTTTGTGTTTAGAGACACTTTGGTGGCACCTGAAAGTAAGTCGAGAGCTGGAGTCATGGGGTCTATGAGTCCTATGGGGATGAATAATTACTTCGTACATACCACTTTTCATGTTTATAGAATAGAAACGGAAAAGAGTTTGCCTTAGAATGTATTTCGAGTGGGGGCAGGGATGTGATTTTCCGGACATGACTCGCCTAAAGTTGTGCAGCTAAAAGCGTGCATTATGACATGGGTGTCGACATCAAGTGACTTCGAATGGTAGCAAAAATCCATTGGAAGATGTCAATCAACTTGTATTGTACTTCTTCGTACGTTAATTGTTGTAGCAAGCTATTTTATCCACACCATTTGAGGGGGAGAGATTTGAACCCATAATCTTTTGGTTTTCACTTCATACATCATGCTAGTTGAGTTAGACTTTTGTTAGCGGAATCATACGAAATACAGGGAGATTGAAAAGTCACGCGAGGAGGTATGGGAGGTTATTAAGTTTCATGCTTCCTCGTGGCCTTGTGGGCGTCAGTCTCATGACCTTTTTGTAATTATGGTCTTGATCTTGTGGACTAGAGTTCTTTTTTGTAGTTAGTGTTAAGACTCCTTTTTTTAGGGTTTCTTGTTCTTCTTATTATTTTTTTTGTATACCTTTGTATTCTTTCATTTGTTATATGAAAGTTCGGTTTGTTACAAAAGAAATGGTAGTTTAAGTGATGTCATATCACAAGACAGACGTTCGAGCAAGCCTTTGAAAAAATGCTAGAGTTCAATGGTTGGTTATTGATAAATTCCTACAGCCAAATGGTGGCGCTTATGGGTGCCCCCATGTCATGATCTAGGTGGGGCAGTCTAATGCCGCGGTTATCATTAAACAAACATTAAAACAAATCTTGGCCCCGCAAAGAAACAAGAGTCATCTTGAGTGTAATGACTTGTAAAGTGCACCTGGAAAAAATGCATCAAGGATGGAATGACCTTAGTCTTGAGTAGAGACAAGATGGAAACCCTAAGCCCAAGTTGGCTATTGTTGCATAGTAAAAAGAATGCATGTACTTCCTGGTGTCTGGCCTAGGGACGAGCATGGTTACACCAATTATAGTGAAGGGAAGCTCTAATTTCTTGCTTTCCAAAAAAAGAAAAGAAAAGAAGAAAGCATGTACATACAATGTGCATGATCGAGAGTCTATTGGGAGAATTAGGCTAAGCTAACTATGGGCAGAAGATGCTCATTTGAGTAGCTTCTAGCTTGAGTGAATTCAAGCAAGTGAACTTGGTAGTCGGTAACTCCCACCTCATGAATAGATAAGGTGAAGGATATTATGTGATTGATTTTATATTACTATTGATAAGGTGAAGGATATTATGTGTCAACTCAACCAAATGTTGTTCACGCGCCTGTTCTAAAGAAATTTTTTCATTTTAAAACTTGAGGGTGAATTTGCAGTCACAAATTAGACTCCAAACTGTAGGCTAAACAGGCGCTCTTTCAAATGGGTTTGACGAAATCTTCATCATTGATTTCATCGATCATATTTATATAAGAGCTTCAATCTCATACTCGTCTCAGTCCATTTTACTCATATATAGTGACAAAATATTATTTGCTAAAGTGGTAGTGGACTTAGAGAATGATGCACAGTTTAACTATAATGCTATGAAAAGGTTGTCAAAAGCAGCATGCTTCTCCAATGTAATAGCAACTATGTAGCCTTCACATAAGTACTAATTCAAAATTTATATCAATTTTGTGCATTCTCCATTAATTGAATAATGGCTTGTATATTGCTACTCTAATTTAATTCATCTGCTTTCTTTTCTTTTTCTAGCACCAATGACGCCGTGTTGGAAGAGATGAAGCGGGAATATGCATCTCAACAAAATGTGAAAATTATTTAGTACTGATATGGTTAGTTTTTTTTTTTTTTTTTTAATTAAGTTATGGATCGTTCTCAGGTGCACTTTCAGGTGATGCTATGTGAAATTTGTTAATTGATAATGGTAAGATCTGATTGAAAAGCTGAGGGTTTATTTTGTTGGTTTATTTTTTTCTGTTTTTTTTTCGTAAATGTTGACAAGCAAATAATTCTGGTTTTATGCT

mRNA sequence

TTGGGATTTAGGGTTTTGGTTCGATCAATCTTGGAGGAAAAAAAACTAGAAGGTGAAAACTGGGGAGTTGGCATTTGACCTCGAATTCCCGATTCTGTATTGCGCTCCGAGATGGGATACTTACAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGTAGTAAGATGAAGCAGAAGGCGATGAAGGAGTGCGATCATTACGCTTCAAGATATGCCGAATGCGCCTACGGCAGAACGTTATCCGTCGTGTTTAAGTGTCGCAACCAAGCTAAAGAATTGAACACTTGCCTTCACCAATACACCAATGACGCCGTGTTGGAAGAGATGAAGCGGGAATATGCATCTCAACAAAATGTGAAAATTATTTAGTACTGATATGGTTAGTTTTTTTTTTTTTTTTTTAATTAAGTTATGGATCGTTCTCAGGTGCACTTTCAGGTGATGCTATGTGAAATTTGTTAATTGATAATGGTAAGATCTGATTGAAAAGCTGAGGGTTTATTTTGTTGGTTTATTTTTTTCTGTTTTTTTTTCGTAAATGTTGACAAGCAAATAATTCTGGTTTTATGCT

Coding sequence (CDS)

ATGGGATACTTACAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGTAGTAAGATGAAGCAGAAGGCGATGAAGGAGTGCGATCATTACGCTTCAAGATATGCCGAATGCGCCTACGGCAGAACGTTATCCGTCGTGTTTAAGTGTCGCAACCAAGCTAAAGAATTGAACACTTGCCTTCACCAATACACCAATGACGCCGTGTTGGAAGAGATGAAGCGGGAATATGCATCTCAACAAAATGTGAAAATTATTTAG

Protein sequence

MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKELNTCLHQYTNDAVLEEMKREYASQQNVKII

Homology

[Close]

BLAST of Sed0025185 vs. NCBI nr
Match: XP_022938373.1 (uncharacterized protein DDB_G0275933 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 9.7e-37
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKAMKECDHYAS+YAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLHQYTND VLEEMKREYA Q + K
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYAHQHDGK 88

[Close]

BLAST of Sed0025185 vs. NCBI nr
Match: KAG6578501.1 (hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKAMKECDHYAS+YAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLHQYTND VLEEMKREYA Q + K
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGK 88

[Close]

BLAST of Sed0025185 vs. NCBI nr
Match: XP_022993759.1 (uncharacterized protein DDB_G0275933 [Cucurbita maxima] >KAG7016065.1 hypothetical protein SDJN02_21169 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKAMKECDHYAS+YAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLHQYTND VLEEMKREYA Q + K
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGK 88

[Close]

BLAST of Sed0025185 vs. NCBI nr
Match: XP_023549716.1 (uncharacterized protein DDB_G0275933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKAMKECDHYAS+YAECAYGRTLSVVFKCR+QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRDQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLHQYTND VLEEMKREYA Q + K
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGK 88

[Close]

BLAST of Sed0025185 vs. NCBI nr
Match: XP_022133533.1 (uncharacterized protein DDB_G0275933 [Momordica charantia] >XP_022133534.1 uncharacterized protein DDB_G0275933 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 8.2e-36
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKA+KECDHYASRYAECAYGRTLSVV+KCR+QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN+CLHQYTND VLEEMKR+YA QQ+ K
Sbjct: 61 LNSCLHQYTNDTVLEEMKRDYALQQDGK 88

[Close]

BLAST of Sed0025185 vs. ExPASy Swiss-Prot
Match: Q552P9 (Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275933 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 16  VEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKELNTCLHQYTNDAVLE 75
           V+  LR K+K +++KEC  + + +A+C+  + +SVV++CR   + +  CL +YT    L 
Sbjct: 30  VDSYLRQKLKDQSLKECSSHVAAFADCSKDKYISVVWECRELQQLMKNCLVEYTTSERLI 89

Query: 76  EMKREYASQQNVKI 90
            MKRE+      +I
Sbjct: 90  GMKREWVDASKKRI 103

[Close]

BLAST of Sed0025185 vs. ExPASy TrEMBL
Match: A0A6J1FIP8 (COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKAMKECDHYAS+YAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLHQYTND VLEEMKREYA Q + K
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYAHQHDGK 88

[Close]

BLAST of Sed0025185 vs. ExPASy TrEMBL
Match: A0A6J1K100 (COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.1e-37
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKAMKECDHYAS+YAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLHQYTND VLEEMKREYA Q + K
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGK 88

[Close]

BLAST of Sed0025185 vs. ExPASy TrEMBL
Match: A0A6J1BW91 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111006094 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKA+KECDHYASRYAECAYGRTLSVV+KCR+QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN+CLHQYTND VLEEMKR+YA QQ+ K
Sbjct: 61 LNSCLHQYTNDTVLEEMKRDYALQQDGK 88

[Close]

BLAST of Sed0025185 vs. ExPASy TrEMBL
Match: A0A1S3CA82 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKA+KECDHYAS+YAECAYGRTLSV+FKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVIFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLH YTND+VL+EMKREYA Q + K
Sbjct: 61 LNNCLHLYTNDSVLDEMKREYALQHDGK 88

[Close]

BLAST of Sed0025185 vs. ExPASy TrEMBL
Match: A0A0A0KVX6 (COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGYLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKE 60
          MGY+Q+ARENHVKKKVEEALRSKMKQKA+KECD YAS+YAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNTCLHQYTNDAVLEEMKREYASQQNVK 89
          LN CLH YTND++L+EMKREYA QQ+ K
Sbjct: 61 LNNCLHSYTNDSILDEMKREYALQQDGK 88

[Close]

BLAST of Sed0025185 vs. TAIR 10
Match: AT5G16060.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 3  YLQDARENHVKKKVEEALRSKMKQKAMKECDHYASRYAECAYGRTLSVVFKCRNQAKELN 62
          Y++ ARENHVKKKVEEALRSKMK KA+ ECD Y S+YA+CA GRT SVV+ CR QA+ELN
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQARELN 63

Query: 63 TCLHQYTNDAVLEEMKREYASQQNVKI 90
          TCLHQ+TND VLEEMKR Y  Q+  K+
Sbjct: 64 TCLHQFTNDNVLEEMKRAYMVQEEGKV 90

The following BLAST results are available for this feature:

BLAST of Sed0025185 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938373.1	9.7e-37	89.77	uncharacterized protein DDB_G0275933 [Cucurbita moschata]	[more]
KAG6578501.1	1.3e-36	89.77	hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993759.1	1.3e-36	89.77	uncharacterized protein DDB_G0275933 [Cucurbita maxima] >KAG7016065.1 hypothetic...	[more]
XP_023549716.1	4.8e-36	88.64	uncharacterized protein DDB_G0275933 [Cucurbita pepo subsp. pepo]	[more]
XP_022133533.1	8.2e-36	87.50	uncharacterized protein DDB_G0275933 [Momordica charantia] >XP_022133534.1 uncha...	[more]

BLAST of Sed0025185 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q552P9	1.1e-06	33.78	Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]

BLAST of Sed0025185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIP8	4.7e-37	89.77	COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640...	[more]
A0A6J1K100	6.1e-37	89.77	COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 P...	[more]
A0A6J1BW91	4.0e-36	87.50	COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100609...	[more]
A0A1S3CA82	2.0e-35	85.23	COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 ...	[more]
A0A0A0KVX6	2.6e-35	85.23	COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE...	[more]

BLAST of Sed0025185 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16060.1	2.5e-30	71.26	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PFAM	PF08583	Cmc1	coord: 20..82 e-value: 2.0E-15 score: 56.6
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PANTHER	PTHR22977	COX ASSEMBLY MITOCHONDRIAL PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR22977:SF5	COX ASSEMBLY MITOCHONDRIAL PROTEIN HOMOLOG	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025185.1	Sed0025185.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion