Sed0024001 (gene) Chayote v1

Overview
NameSed0024001
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
LocationLG09: 6794879 .. 6797366 (+)
RNA-Seq ExpressionSed0024001
SyntenySed0024001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCTTTCCTTCTCCTTCTCTTCCTCCCTTCTTCCTCCTTCAATTCCCTTCCCCACCATCTCCCTTTCCTCCAATCCTCGCCTCATTCGCTGCGCATTTTCAGCCACAAAACCCCCTTCTTCTTCTTCATCGGCTGTCAAGAAGCGGCACTGGAAACACGGCGAATTCTCAGGCGTGACAGAGAGATCCGCCCCCAAGAACTCCCCTCTCAAGAACGTCAAGAAGAGATTAGAGCGAAGAAACAAGGCCAAGGCCTGGGCCAATACCGTCACTGAAGCCTTGTCCGATCATATTTCCAATAAGCGTTGCCTTCAGGCTCTTCAGGTCGCTTTCCCCCACCCCCCCTCCCTTTCTTCTCGTTTTAGGGTTTCTGTTTCTGTTTTTGTTTTCTCCATAGCAAGTAATCATAGTTTCATATGTCCTTTTCATTTACAGCAAAAAACTACATATTTGGGGATTTCTGGGAGATATATTACATGCTCTTCAAAGTTACATTCATCTTCGTGTGCCTTAATTTGAAGTTTTTATTTGACAAGTCTGAATAAACTTTTGCGTTTAGTGTTTTAAAACACTTGCAGAGGCTCGCTTCTTGTACGCCTCGAGTCTAGCATCTTGCCTTACGCTTTAGATAAAAAGACCGTGCAGCATCATTAATTGTAAAAAAAAAAGAAGTTTACTTACTATAATTATAAACACAAATTCTCGACTTTAGGGGGTGTTTGTTTGACATATTCAGGTAGTTTTTAGGTTAAGAAGTTATATTGAGTAGTTAAAAATTGAGAGTTGTGCCAAAAACTCGTTTGGATGTAGTTTTTGTGTAGAGGAGTTATAGTCAAAACCTTGTTTGGATGTAGATTTAAGATGAGTAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGAGTGGTTAAAAATAAGTTATTTTGATTGATTTGAAAGGAATTATTAAAAATGAGTGGTTAGAAATGATTGAGTAGTTTATAAATGAATGATTAAAAATGAATAGTGAGAGTTATTTTCAAAAGTAAAATTGAGGAGGAGTTGGTAAAAACTCGTTTAGATGTAGGTTTTCGAGGAGAAGTTAATAAATTCTAATCCTAACTCCTAGCTAAAAACGTCAAACTAACAGCCCCTAGGAGTTTTTGTCCTTAAAGTATTTATTTAAACATTCCCACTCCCACTCTGCTGTTTCTTATTTATGAATGTTTTTTATATATAGTGCAGCTTACAAAAAAACGCCATGTTTTTTTTGTGCCTTGCTCGTAAGCATAAGCTCTCGAGTAGGCTATTGCTTGAGCTTTTAAAAACACCACTGGTGCTATTGTTTTCACTTCTAACAATTGTGGCTGCTTTACTTCAACCGTTCAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGTTGCTTGTTCTACTTGGAAGATCTGGCCAACCACATCGTGCACGTCAGCTTTTCGAGACAATGATTGAAGAAAGACGCGAGCCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCTTACTGTAGGAACAATCTCATTGATGATGCATTCTCCATTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAGCCTGATGTCTACACTTATAGTATCTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAATTAGTTGAATCTTTGTATGAGGAAATGGCAGAACGACTCATAACTCCAAATACGGTAACACAGAACATAGTCTTAAGTGGGTATGGGAAGATAGGGGAGTACGATCTGATGGAAAAGGTTCTATTAGGAATGCTTGAGAGCTCAAGTTGTAGACCGGATGTGTGGACGATGAATATAATTCTTAGTGTGTTTGGTAACAAAGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAACCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGTAAGAAAAGGATGTATGATAAAATGTCATCCGTGATGGAATATATGCGTAAACTGCAGTTTCCTTGGACAACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGCGGGGGATGCAAAGAATATGGAGTACACCTTCGAGCAGATGCGTGCTGAGAAAATGAGAATGGATACCAAGACATTCTGTTGTCTTATATATGGATATGGCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCGGTTAAGTTGGCTGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATCTGCGTGTGCTAAAGTCGAGGATCTGATGGAAATGGATAGAATATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATAGAAGCATATAGAAAGGAAGGCATGAATGACAGGGTTCATTGCTTGGAACTAGAAAAGCAGCAGGTGATCGATGATGCCTCTAATAACGAGTGA

mRNA sequence

ATGGCTTCCCTTTCCTTCTCCTTCTCTTCCTCCCTTCTTCCTCCTTCAATTCCCTTCCCCACCATCTCCCTTTCCTCCAATCCTCGCCTCATTCGCTGCGCATTTTCAGCCACAAAACCCCCTTCTTCTTCTTCATCGGCTGTCAAGAAGCGGCACTGGAAACACGGCGAATTCTCAGGCGTGACAGAGAGATCCGCCCCCAAGAACTCCCCTCTCAAGAACGTCAAGAAGAGATTAGAGCGAAGAAACAAGGCCAAGGCCTGGGCCAATACCGTCACTGAAGCCTTGTCCGATCATATTTCCAATAAGCGTTGCCTTCAGGCTCTTCAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGTTGCTTGTTCTACTTGGAAGATCTGGCCAACCACATCGTGCACGTCAGCTTTTCGAGACAATGATTGAAGAAAGACGCGAGCCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCTTACTGTAGGAACAATCTCATTGATGATGCATTCTCCATTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAGCCTGATGTCTACACTTATAGTATCTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAATTAGTTGAATCTTTGTATGAGGAAATGGCAGAACGACTCATAACTCCAAATACGGTAACACAGAACATAGTCTTAAGTGGGTATGGGAAGATAGGGGAGTACGATCTGATGGAAAAGGTTCTATTAGGAATGCTTGAGAGCTCAAGTTGTAGACCGGATGTGTGGACGATGAATATAATTCTTAGTGTGTTTGGTAACAAAGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAACCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGTAAGAAAAGGATGTATGATAAAATGTCATCCGTGATGGAATATATGCGTAAACTGCAGTTTCCTTGGACAACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGCGGGGGATGCAAAGAATATGGAGTACACCTTCGAGCAGATGCGTGCTGAGAAAATGAGAATGGATACCAAGACATTCTGTTGTCTTATATATGGATATGGCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCGGTTAAGTTGGCTGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATCTGCGTGTGCTAAAGTCGAGGATCTGATGGAAATGGATAGAATATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATAGAAGCATATAGAAAGGAAGGCATGAATGACAGGGTTCATTGCTTGGAACTAGAAAAGCAGCAGGTGATCGATGATGCCTCTAATAACGAGTGA

Coding sequence (CDS)

ATGGCTTCCCTTTCCTTCTCCTTCTCTTCCTCCCTTCTTCCTCCTTCAATTCCCTTCCCCACCATCTCCCTTTCCTCCAATCCTCGCCTCATTCGCTGCGCATTTTCAGCCACAAAACCCCCTTCTTCTTCTTCATCGGCTGTCAAGAAGCGGCACTGGAAACACGGCGAATTCTCAGGCGTGACAGAGAGATCCGCCCCCAAGAACTCCCCTCTCAAGAACGTCAAGAAGAGATTAGAGCGAAGAAACAAGGCCAAGGCCTGGGCCAATACCGTCACTGAAGCCTTGTCCGATCATATTTCCAATAAGCGTTGCCTTCAGGCTCTTCAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGTTGCTTGTTCTACTTGGAAGATCTGGCCAACCACATCGTGCACGTCAGCTTTTCGAGACAATGATTGAAGAAAGACGCGAGCCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCTTACTGTAGGAACAATCTCATTGATGATGCATTCTCCATTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAGCCTGATGTCTACACTTATAGTATCTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAATTAGTTGAATCTTTGTATGAGGAAATGGCAGAACGACTCATAACTCCAAATACGGTAACACAGAACATAGTCTTAAGTGGGTATGGGAAGATAGGGGAGTACGATCTGATGGAAAAGGTTCTATTAGGAATGCTTGAGAGCTCAAGTTGTAGACCGGATGTGTGGACGATGAATATAATTCTTAGTGTGTTTGGTAACAAAGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAACCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGTAAGAAAAGGATGTATGATAAAATGTCATCCGTGATGGAATATATGCGTAAACTGCAGTTTCCTTGGACAACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGCGGGGGATGCAAAGAATATGGAGTACACCTTCGAGCAGATGCGTGCTGAGAAAATGAGAATGGATACCAAGACATTCTGTTGTCTTATATATGGATATGGCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCGGTTAAGTTGGCTGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATCTGCGTGTGCTAAAGTCGAGGATCTGATGGAAATGGATAGAATATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATAGAAGCATATAGAAAGGAAGGCATGAATGACAGGGTTCATTGCTTGGAACTAGAAAAGCAGCAGGTGATCGATGATGCCTCTAATAACGAGTGA

Protein sequence

MASLSFSFSSSLLPPSIPFPTISLSSNPRLIRCAFSATKPPSSSSSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQQVIDDASNNE
Homology
[Close]
BLAST of Sed0024001 vs. NCBI nr
Match: XP_038875824.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Benincasa hispida])

HSP 1 Score: 823.5 bits (2126), Expect = 9.1e-235
Identity = 417/492 (84.76%), Postives = 443/492 (90.04%), Query Frame = 0 

Query: 4   LSFSFSSSLLPPSIPFP-----------TISLSSNPRLIRCAFSA----TKPPS-SSSSA 63
           +SFSFSSSLLP S+ F            + S  SN  ++RCAF+A    + PPS SSSS 
Sbjct: 2   VSFSFSSSLLPSSVSFDHGATFFFPIFVSSSSHSNSPIVRCAFAAPTRKSPPPSISSSSP 61

Query: 64  VKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQ 123
            KK+HWK GEF G+TE S P+ +PLKNVKK+L+R+N AKAWANTVTEALSDHI+NKR LQ
Sbjct: 62  AKKKHWKQGEFPGITETSTPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQ 121

Query: 124 ALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALL 183
           AL+VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPHRAR LF+TM+EER EPTSELYTALL
Sbjct: 122 ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARSLFDTMLEERCEPTSELYTALL 181

Query: 184 AAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLI 243
           AAYCRNNLID+AFS LNLMKTLPGCQPDVYTYS LIKACVD SRFE+VESLYEEMAERLI
Sbjct: 182 AAYCRNNLIDEAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFEIVESLYEEMAERLI 241

Query: 244 TPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMME 303
           TPNTVTQNIVLSGYGKIG+YD MEKVLLGMLESS+CRPDVWTMNIILSVFGNKGQIEMME
Sbjct: 242 TPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESSTCRPDVWTMNIILSVFGNKGQIEMME 301

Query: 304 RWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF 363
           RWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF
Sbjct: 302 RWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF 361

Query: 364 ADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENT 423
           AD GDAKNMEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVISSVKLAGK+EIPENT
Sbjct: 362 ADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENT 421

Query: 424 SFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELE 480
           SFYNAVISACAK EDLMEMDR+FKRMKDKHCQPDSKTYSIMIEAY KEGMNDRVH LELE
Sbjct: 422 SFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYGKEGMNDRVHYLELE 481

[Close]
BLAST of Sed0024001 vs. NCBI nr
Match: XP_008458291.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Cucumis melo])

HSP 1 Score: 813.5 bits (2100), Expect = 9.5e-232
Identity = 411/495 (83.03%), Postives = 442/495 (89.29%), Query Frame = 0 

Query: 5   SFSFSSSLLPPSIPFPTISL--------------SSNP--RLIRCAFSA----TKPPSSS 64
           SFSFSSSLLP S+ F  +S               SS+P  R++RCAF+A    +  PS+S
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSSSSSSSHPNSRIVRCAFAAPTRKSPVPSTS 62

Query: 65  SSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKR 124
           SS  KKRHWK GEF G+TE    + +PLKNVKK+L+R+N AKAWANTVTEALSDHISNKR
Sbjct: 63  SSPAKKRHWKQGEFPGITETPTRRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISNKR 122

Query: 125 CLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYT 184
            L+AL+VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPHRAR LF+TM++ER EPTSELYT
Sbjct: 123 WLEALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTSELYT 182

Query: 185 ALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAE 244
           ALLAAYCRNNLIDDAFS LNLMKTLPGCQPDVYTYSILIKACVD SRFE+VESLYEEMA+
Sbjct: 183 ALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYEEMAQ 242

Query: 245 RLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIE 304
           RLITPNTVTQNIVLSGYGKIG+YD MEKVL+GMLES++CRPDVWTMNIILSVFGNKGQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 305 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 364
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 365 EAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIP 424
           EAFAD GDAKNMEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVISSVKLAGK EIP
Sbjct: 363 EAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKLEIP 422

Query: 425 ENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCL 480
           ENTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPDSKTY+IM+EAY KEGMNDRVH L
Sbjct: 423 ENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYNIMMEAYGKEGMNDRVHYL 482

[Close]
BLAST of Sed0024001 vs. NCBI nr
Match: XP_004138596.2 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Cucumis sativus] >KGN45620.2 hypothetical protein Csa_005310 [Cucumis sativus])

HSP 1 Score: 811.2 bits (2094), Expect = 4.7e-231
Identity = 410/494 (83.00%), Postives = 439/494 (88.87%), Query Frame = 0 

Query: 5   SFSFSSSLLPPSIPFPTISL-------------SSNP--RLIRCAFSA----TKPPSSSS 64
           SFSFSSSLLP S+ F  +S              SS+P  R++RCAF+A    +  PS+SS
Sbjct: 13  SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVPSTSS 72

Query: 65  SAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRC 124
           S  KKRHWK GEF G TE S  + +PLK VKK+L+R+N AKAWANTVTEALSDHI+NKR 
Sbjct: 73  SPAKKRHWKQGEFPGTTETSTRRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRW 132

Query: 125 LQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTA 184
           LQAL+VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPHRAR LF+TM++ER EPT ELYTA
Sbjct: 133 LQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTA 192

Query: 185 LLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAER 244
           LLAAYCRNNLIDDAFS LNLMKTLP CQPDVYTYSILIKACVDDSRFE+VESLYEEMAER
Sbjct: 193 LLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAER 252

Query: 245 LITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEM 304
           LITPNTVTQNIVLSGYGKIG+YD MEKVL+GMLES++CRPDVWTMNIILSVFGNKG IEM
Sbjct: 253 LITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEM 312

Query: 305 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 364
           MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE
Sbjct: 313 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 372

Query: 365 AFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPE 424
           AFAD GDAKNMEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVI SVKLAGK EIPE
Sbjct: 373 AFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPE 432

Query: 425 NTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLE 480
           NTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPD+KTYSIM+EAY KEGMNDRVH LE
Sbjct: 433 NTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLE 492

[Close]
BLAST of Sed0024001 vs. NCBI nr
Match: XP_022958884.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 795.8 bits (2054), Expect = 2.0e-226
Identity = 404/495 (81.62%), Postives = 433/495 (87.47%), Query Frame = 0 

Query: 5   SFSFSSSLLPPSIPFP-----------TISLSSNPRLIRCAFSA----TKPP-----SSS 64
           +FSFSSSLLP S+ F            + S  SN R +RC F+A    + PP     SSS
Sbjct: 3   AFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSSSS 62

Query: 65  SSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKR 124
           SS VKK+HWK GEF GVTE    + +PLKNVKK+L+R+  AKAWANTVTEALS+HI+NKR
Sbjct: 63  SSPVKKKHWKQGEFPGVTETFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKR 122

Query: 125 CLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYT 184
            +QAL+VFEMLRKQPFYEPKEGTYMKLLVLLGRSGQP RAR LF+TM+EE+ EPT+ELYT
Sbjct: 123 WIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYT 182

Query: 185 ALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAE 244
           ALLAAYCRNNLIDDAFS+LNLMKTLP CQPD+YTYSILIKACVD SRFELVESLYEEMAE
Sbjct: 183 ALLAAYCRNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAE 242

Query: 245 RLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIE 304
           RLITPNTVTQNIVLSGYGKIG+YD MEKVLLGMLES++CRPDVWTMNIILSVFGNKGQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 305 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 364
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 365 EAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIP 424
           EAFAD GDAKNMEYTF QMRAE M+ DTKTFCCLI GY NAGLFHKVI SVKLAGK EIP
Sbjct: 363 EAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIP 422

Query: 425 ENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCL 480
           ENTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPDSKTYSIMIEAY KE MNDRVH L
Sbjct: 423 ENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL 482

[Close]
BLAST of Sed0024001 vs. NCBI nr
Match: XP_023514865.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 795.8 bits (2054), Expect = 2.0e-226
Identity = 401/490 (81.84%), Postives = 435/490 (88.78%), Query Frame = 0 

Query: 3   SLSFSFSSSLLPPSIPF--------PTI-SLSSNPRLIRCAFSA----TKPPSSSSSAVK 62
           S SFSFSSSLLP S+          P + S  SN  ++RCAF+A    + PPS SSS  K
Sbjct: 8   SFSFSFSSSLLPSSVSIDHGFVSFSPIVPSPHSNTLIVRCAFAAPARKSPPPSPSSSPFK 67

Query: 63  KRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQAL 122
           K HWK GEF G+T+ SAPK +PLKNVKK+L+R N AKAWANTVTEALSDHI+NKR L AL
Sbjct: 68  KTHWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSDHIANKRWLPAL 127

Query: 123 QVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAA 182
           +VFEMLR+QPFYEPKEGTYMKL+VLLG+SGQPHRARQ+F+ M+EER E TSELYTAL+AA
Sbjct: 128 EVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEATSELYTALIAA 187

Query: 183 YCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITP 242
           YCRNNLIDDAFS LNLMKTLPGCQPDVYTYS LIKACVDDSRFELVES+YEEMAERLI+P
Sbjct: 188 YCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESVYEEMAERLISP 247

Query: 243 NTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERW 302
           NTVTQNIVLSGYGKIG+Y+ MEKVLLGMLES+SCRPDVWTMNIIL VFGN+GQIEMMERW
Sbjct: 248 NTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTSCRPDVWTMNIILGVFGNEGQIEMMERW 307

Query: 303 YEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAD 362
           YEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTSTYNNVIEAFAD
Sbjct: 308 YEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTSTYNNVIEAFAD 367

Query: 363 AGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSF 422
            GDA +MEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVISSVKLAGKYEIPENTSF
Sbjct: 368 VGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSF 427

Query: 423 YNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQ 480
           YNAVI ACAK EDLMEMDR+FKRMK+KH QPD+KTYSIMIEAY K+GMNDRVH LE+EK+
Sbjct: 428 YNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRVHYLEIEKK 487

[Close]
BLAST of Sed0024001 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)

HSP 1 Score: 671.4 bits (1731), Expect = 7.6e-192
Identity = 332/474 (70.04%), Postives = 400/474 (84.39%), Query Frame = 0 

Query: 1   MASLSFSFSSSLLPPSIPFPTISL-SSNPRLIRCAFSATKPPSSSSSAVKKRHWKHGEFS 60
           MAS+S SFSSSL    IP         +  ++RC  +A+K  SS  S  KKR WK GEF 
Sbjct: 1   MASMSLSFSSSLCSSRIPEGKRRFRHRDVGIVRCVLAASK--SSPGSVTKKRLWKDGEFP 60

Query: 61  GVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQP 120
           G+TE    + +P+KNVKK+L+RR+KA  W NTVTE LSD I+ K+ LQAL+VF+MLR+Q 
Sbjct: 61  GITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQT 120

Query: 121 FYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDA 180
           FY+PKEGTYMKLLVLLG+SGQP+RA++LF+ M+EE  EPT ELYTALLAAY R+NLIDDA
Sbjct: 121 FYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDA 180

Query: 181 FSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLS 240
           FSIL+ MK+ P CQPDV+TYS L+KACVD S+F+LV+SLY+EM ERLITPNTVTQNIVLS
Sbjct: 181 FSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLS 240

Query: 241 GYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIE 300
           GYG++G +D MEKVL  ML S++C+PDVWTMNIILSVFGN G+I+MME WYEKFRNFGIE
Sbjct: 241 GYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIE 300

Query: 301 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYT 360
           PETRTFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IEAFAD GDAKNME T
Sbjct: 301 PETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELT 360

Query: 361 FEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAK 420
           F+QMR+E M+ DTKTFCCLI GY NAGLFHKVISSV+LA K+EIPENT+FYNAVISACAK
Sbjct: 361 FDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAK 420

Query: 421 VEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQQVID 474
            +DL+EM+R++ RMK++ C  DS+T+ IM+EAY KEGMND+++ LE E+Q+++D
Sbjct: 421 ADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMD 472

[Close]
BLAST of Sed0024001 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 324.3 bits (830), Expect = 2.3e-87
Identity = 166/382 (43.46%), Postives = 233/382 (60.99%), Query Frame = 0 

Query: 80  ERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSG 139
           +++   K    TV E+L + I+  R   A+QVFE+LR+Q +Y+P  G Y+KL+V+LG+  
Sbjct: 105 KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCK 164

Query: 140 QPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTY 199
           QP +A +LF+ MI E      E+YTAL++AY R+   D AF++L  MK+   CQPDV+TY
Sbjct: 165 QPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTY 224

Query: 200 SILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLE 259
           SILIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   +  ME  L+ ML 
Sbjct: 225 SILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLG 284

Query: 260 SSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYD 319
              C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNIL+ +YGK   Y 
Sbjct: 285 EDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYK 344

Query: 320 KMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLI 379
           KMS+VMEYM+K  + WT  TYN VI+AF  AGD K MEY F  M++E++     T C L+
Sbjct: 345 KMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLV 404

Query: 380 YGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQ 439
             YG A    K+   ++     +I  +  F+N ++ A  ++E   EM  + + M+ K  +
Sbjct: 405 RAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFK 464

Query: 440 PDSKTYSIMIEAYRKEGMNDRV 462
           PD  TY  M++AYR  GM   V
Sbjct: 465 PDKITYRTMVKAYRISGMTTHV 486

[Close]
BLAST of Sed0024001 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 5.8e-83
Identity = 156/403 (38.71%), Postives = 245/403 (60.79%), Query Frame = 0 

Query: 69  NSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQPFYEPKEGTY 128
           ++ +K ++++         W   V EAL + I   R   AL++F +LRKQ +YEP+  TY
Sbjct: 38  DAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTY 97

Query: 129 MKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDAFSILNLMKT 188
            KL  +LG   QP +A  LFE M+ E  +PT ++YT+L++ Y ++ L+D AFS L  MK+
Sbjct: 98  TKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKS 157

Query: 189 LPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGEYD 248
           +  C+PDV+T+++LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G ++
Sbjct: 158 VSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFE 217

Query: 249 LMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 308
            ME VL  M+E     PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNIL
Sbjct: 218 EMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNIL 277

Query: 309 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYTFEQMRAEKM 368
           I ++GK  MY KM SVM++M K  F  TT TYN VIE F  AG  + M+  F +M+ + +
Sbjct: 278 ILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGV 337

Query: 369 RMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKVEDLMEMDR 428
           + ++ T+C L+  Y  AGL  K+ S ++     ++  +T F+N +I+A  +  DL  M  
Sbjct: 338 KPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKE 397

Query: 429 IFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQQV 472
           ++ +M+++ C+PD  T++ MI+ Y   G+ D V   ELEKQ +
Sbjct: 398 LYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQ--ELEKQMI 438

[Close]
BLAST of Sed0024001 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-40
Identity = 104/359 (28.97%), Postives = 175/359 (48.75%), Query Frame = 0 

Query: 106 LQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTA 165
           LQ L VF  ++KQ +Y    G Y KL+ ++GR GQ   A  LF  M     +P + +Y +
Sbjct: 105 LQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNS 164

Query: 166 LLAAYC----RNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEE 225
           L+ A+     +   +  A      MK +  CQP + TY+IL++A       + V+ L+++
Sbjct: 165 LIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKD 224

Query: 226 MAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKG 285
           + E +++P+  T N VL  YGK G    ME VL+ M +S+ CRPDV T NI++  +G K 
Sbjct: 225 LDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRM-KSTQCRPDVITFNILIDSYGRKQ 284

Query: 286 QIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYN 345
             + ME+ ++        P   TFN +I  YG+ R+ +K  SV+E M +L F     T  
Sbjct: 285 TFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQE 344

Query: 346 NVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKY 405
            +I  +A           F+++   + ++   +   ++  Y   GL  +    +  A + 
Sbjct: 345 CLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQ 404

Query: 406 EIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDR 461
            +  N S Y  +  A  K  D + + ++ KRM  +   P+ K +   +EA+   G +DR
Sbjct: 405 CVVPNGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAF---GTSDR 459

[Close]
BLAST of Sed0024001 vs. ExPASy Swiss-Prot
Match: Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.3e-39
Identity = 96/351 (27.35%), Postives = 169/351 (48.15%), Query Frame = 0 

Query: 106 LQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTA 165
           LQ L+VF  ++KQ +Y P  G Y KL+ ++G+ GQ   A  LF  M      P + +Y A
Sbjct: 114 LQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNA 173

Query: 166 LLAAYC----RNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEE 225
           L+ A+     +   ++     L+ MK +  CQP+V TY+IL++A     + + V +L+++
Sbjct: 174 LITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKD 233

Query: 226 MAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKG 285
           +    ++P+  T N V+  YGK G    ME VL  M  S+ C+PD+ T N+++  +G K 
Sbjct: 234 LDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQ 293

Query: 286 QIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYN 345
           + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  TY 
Sbjct: 294 EFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYE 353

Query: 346 NVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKY 405
            +I  +   G        FE++      +   T   ++  Y   GL+ +       A  +
Sbjct: 354 CMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAF 413

Query: 406 EIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAY 453
            +  + S Y  +  A  K +   ++  + K+M+     P+ + +   +E +
Sbjct: 414 RVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

[Close]
BLAST of Sed0024001 vs. ExPASy TrEMBL
Match: A0A1S3C7L9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497754 PE=4 SV=1)

HSP 1 Score: 813.5 bits (2100), Expect = 4.6e-232
Identity = 411/495 (83.03%), Postives = 442/495 (89.29%), Query Frame = 0 

Query: 5   SFSFSSSLLPPSIPFPTISL--------------SSNP--RLIRCAFSA----TKPPSSS 64
           SFSFSSSLLP S+ F  +S               SS+P  R++RCAF+A    +  PS+S
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSSSSSSSHPNSRIVRCAFAAPTRKSPVPSTS 62

Query: 65  SSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKR 124
           SS  KKRHWK GEF G+TE    + +PLKNVKK+L+R+N AKAWANTVTEALSDHISNKR
Sbjct: 63  SSPAKKRHWKQGEFPGITETPTRRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISNKR 122

Query: 125 CLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYT 184
            L+AL+VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPHRAR LF+TM++ER EPTSELYT
Sbjct: 123 WLEALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTSELYT 182

Query: 185 ALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAE 244
           ALLAAYCRNNLIDDAFS LNLMKTLPGCQPDVYTYSILIKACVD SRFE+VESLYEEMA+
Sbjct: 183 ALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYEEMAQ 242

Query: 245 RLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIE 304
           RLITPNTVTQNIVLSGYGKIG+YD MEKVL+GMLES++CRPDVWTMNIILSVFGNKGQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 305 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 364
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 365 EAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIP 424
           EAFAD GDAKNMEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVISSVKLAGK EIP
Sbjct: 363 EAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKLEIP 422

Query: 425 ENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCL 480
           ENTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPDSKTY+IM+EAY KEGMNDRVH L
Sbjct: 423 ENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYNIMMEAYGKEGMNDRVHYL 482

[Close]
BLAST of Sed0024001 vs. ExPASy TrEMBL
Match: A0A0A0K7C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1)

HSP 1 Score: 811.2 bits (2094), Expect = 2.3e-231
Identity = 410/494 (83.00%), Postives = 439/494 (88.87%), Query Frame = 0 

Query: 5   SFSFSSSLLPPSIPFPTISL-------------SSNP--RLIRCAFSA----TKPPSSSS 64
           SFSFSSSLLP S+ F  +S              SS+P  R++RCAF+A    +  PS+SS
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVPSTSS 62

Query: 65  SAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRC 124
           S  KKRHWK GEF G TE S  + +PLK VKK+L+R+N AKAWANTVTEALSDHI+NKR 
Sbjct: 63  SPAKKRHWKQGEFPGTTETSTRRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRW 122

Query: 125 LQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTA 184
           LQAL+VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPHRAR LF+TM++ER EPT ELYTA
Sbjct: 123 LQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTA 182

Query: 185 LLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAER 244
           LLAAYCRNNLIDDAFS LNLMKTLP CQPDVYTYSILIKACVDDSRFE+VESLYEEMAER
Sbjct: 183 LLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAER 242

Query: 245 LITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEM 304
           LITPNTVTQNIVLSGYGKIG+YD MEKVL+GMLES++CRPDVWTMNIILSVFGNKG IEM
Sbjct: 243 LITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEM 302

Query: 305 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 364
           MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE
Sbjct: 303 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 362

Query: 365 AFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPE 424
           AFAD GDAKNMEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVI SVKLAGK EIPE
Sbjct: 363 AFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPE 422

Query: 425 NTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLE 480
           NTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPD+KTYSIM+EAY KEGMNDRVH LE
Sbjct: 423 NTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLE 482

[Close]
BLAST of Sed0024001 vs. ExPASy TrEMBL
Match: A0A6J1H6E5 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460035 PE=4 SV=1)

HSP 1 Score: 795.8 bits (2054), Expect = 9.9e-227
Identity = 404/495 (81.62%), Postives = 433/495 (87.47%), Query Frame = 0 

Query: 5   SFSFSSSLLPPSIPFP-----------TISLSSNPRLIRCAFSA----TKPP-----SSS 64
           +FSFSSSLLP S+ F            + S  SN R +RC F+A    + PP     SSS
Sbjct: 3   AFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSSSS 62

Query: 65  SSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKR 124
           SS VKK+HWK GEF GVTE    + +PLKNVKK+L+R+  AKAWANTVTEALS+HI+NKR
Sbjct: 63  SSPVKKKHWKQGEFPGVTETFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKR 122

Query: 125 CLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYT 184
            +QAL+VFEMLRKQPFYEPKEGTYMKLLVLLGRSGQP RAR LF+TM+EE+ EPT+ELYT
Sbjct: 123 WIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYT 182

Query: 185 ALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAE 244
           ALLAAYCRNNLIDDAFS+LNLMKTLP CQPD+YTYSILIKACVD SRFELVESLYEEMAE
Sbjct: 183 ALLAAYCRNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAE 242

Query: 245 RLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIE 304
           RLITPNTVTQNIVLSGYGKIG+YD MEKVLLGMLES++CRPDVWTMNIILSVFGNKGQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 305 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 364
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 365 EAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIP 424
           EAFAD GDAKNMEYTF QMRAE M+ DTKTFCCLI GY NAGLFHKVI SVKLAGK EIP
Sbjct: 363 EAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIP 422

Query: 425 ENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCL 480
           ENTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPDSKTYSIMIEAY KE MNDRVH L
Sbjct: 423 ENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL 482

[Close]
BLAST of Sed0024001 vs. ExPASy TrEMBL
Match: A0A5D3BUY5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00710 PE=4 SV=1)

HSP 1 Score: 794.7 bits (2051), Expect = 2.2e-226
Identity = 389/439 (88.61%), Postives = 413/439 (94.08%), Query Frame = 0 

Query: 41  PSSSSSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHI 100
           PS+SSS  KKRHWK GEF G+TE    + +PLKNVKK+L+R+N AKAWANTVTEALSDHI
Sbjct: 18  PSTSSSPAKKRHWKQGEFPGITETPTRRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHI 77

Query: 101 SNKRCLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTS 160
           SNKR L+AL+VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPHRAR LF+TM++ER EPTS
Sbjct: 78  SNKRWLEALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTS 137

Query: 161 ELYTALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYE 220
           ELYTALLAAYCRNNLIDDAFS LNLMKTLPGCQPDVYTYSILIKACVD SRFE+VESLYE
Sbjct: 138 ELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYE 197

Query: 221 EMAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNK 280
           EMA+RLITPNTVTQNIVLSGYGKIG+YD MEKVL+GMLES++CRPDVWTMNIILSVFGNK
Sbjct: 198 EMAQRLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNK 257

Query: 281 GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTY 340
           GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTY
Sbjct: 258 GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTY 317

Query: 341 NNVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGK 400
           NNVIEAFAD GDAKNMEYTFEQMRAE MR DTKTFCCLI GY NAGLFHKVISSVKLAGK
Sbjct: 318 NNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGK 377

Query: 401 YEIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDR 460
            EIPENTSFYNAVISACAK EDLMEMDR+FKRMKDKHCQPDSKTY+IM+EAY KEGMNDR
Sbjct: 378 LEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYNIMMEAYGKEGMNDR 437

Query: 461 VHCLELEKQQVIDDASNNE 480
           VH LELEK++VID ASNNE
Sbjct: 438 VHYLELEKKEVIDYASNNE 456

[Close]
BLAST of Sed0024001 vs. ExPASy TrEMBL
Match: A0A6J1CCD9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009924 PE=4 SV=1)

HSP 1 Score: 791.6 bits (2043), Expect = 1.9e-225
Identity = 407/489 (83.23%), Postives = 427/489 (87.32%), Query Frame = 0 

Query: 1   MASLSFSFSSSLLPP------SIPFPTI----SLSSNPRLIRCAFSATKPPSSSSSAVKK 60
           MASLSFSFSSSLLP       S  F  I    S  SN  ++RCAF+A  P   S     K
Sbjct: 1   MASLSFSFSSSLLPSVSLDNGSTSFSPILRRSSSDSNTYIVRCAFAA--PARKSPPPPPK 60

Query: 61  RHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQALQ 120
           RHWK GEF G+T  SAP  +PLKNVKK+L+R+N AKAWANTVTEALSDHIS K+ LQALQ
Sbjct: 61  RHWKQGEFPGITGTSAPNKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISKKQWLQALQ 120

Query: 121 VFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAAY 180
           VFEMLR+QPFYEPKEGTYMKLLVLLGRSGQ HRA QLF+TM+EER EPTSELYTALLAAY
Sbjct: 121 VFEMLREQPFYEPKEGTYMKLLVLLGRSGQAHRAHQLFDTMVEERCEPTSELYTALLAAY 180

Query: 181 CRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITPN 240
            RNNLIDDAFS LN MKTLP CQPDVYTYS LIKACVD SRFELVESLYEEMAERLITPN
Sbjct: 181 SRNNLIDDAFSTLNHMKTLPRCQPDVYTYSTLIKACVDASRFELVESLYEEMAERLITPN 240

Query: 241 TVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERWY 300
           TVTQNIVLSGYGKIG+YD MEKVLLGMLES+SCRPDVWTMNIILSVFGNK QIEMMERWY
Sbjct: 241 TVTQNIVLSGYGKIGKYDQMEKVLLGMLESTSCRPDVWTMNIILSVFGNKEQIEMMERWY 300

Query: 301 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADA 360
           EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFA+ 
Sbjct: 301 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEV 360

Query: 361 GDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSFY 420
           GDAKNMEYTFEQM AE MR DTKTFCCLI GY NAGLFHKVISSVKLAGKYEIPENTSFY
Sbjct: 361 GDAKNMEYTFEQMCAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFY 420

Query: 421 NAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQQ 480
           N VISACAK +DL+EMDR+FKRMKDKHCQPD KTYSIMIEAY KEGMND+VH LELEK Q
Sbjct: 421 NVVISACAKADDLIEMDRVFKRMKDKHCQPDCKTYSIMIEAYGKEGMNDKVHYLELEKNQ 480

[Close]
BLAST of Sed0024001 vs. TAIR 10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 671.4 bits (1731), Expect = 5.4e-193
Identity = 332/474 (70.04%), Postives = 400/474 (84.39%), Query Frame = 0 

Query: 1   MASLSFSFSSSLLPPSIPFPTISL-SSNPRLIRCAFSATKPPSSSSSAVKKRHWKHGEFS 60
           MAS+S SFSSSL    IP         +  ++RC  +A+K  SS  S  KKR WK GEF 
Sbjct: 1   MASMSLSFSSSLCSSRIPEGKRRFRHRDVGIVRCVLAASK--SSPGSVTKKRLWKDGEFP 60

Query: 61  GVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQP 120
           G+TE    + +P+KNVKK+L+RR+KA  W NTVTE LSD I+ K+ LQAL+VF+MLR+Q 
Sbjct: 61  GITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQT 120

Query: 121 FYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDA 180
           FY+PKEGTYMKLLVLLG+SGQP+RA++LF+ M+EE  EPT ELYTALLAAY R+NLIDDA
Sbjct: 121 FYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDA 180

Query: 181 FSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLS 240
           FSIL+ MK+ P CQPDV+TYS L+KACVD S+F+LV+SLY+EM ERLITPNTVTQNIVLS
Sbjct: 181 FSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLS 240

Query: 241 GYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIE 300
           GYG++G +D MEKVL  ML S++C+PDVWTMNIILSVFGN G+I+MME WYEKFRNFGIE
Sbjct: 241 GYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIE 300

Query: 301 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYT 360
           PETRTFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IEAFAD GDAKNME T
Sbjct: 301 PETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELT 360

Query: 361 FEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAK 420
           F+QMR+E M+ DTKTFCCLI GY NAGLFHKVISSV+LA K+EIPENT+FYNAVISACAK
Sbjct: 361 FDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAK 420

Query: 421 VEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQQVID 474
            +DL+EM+R++ RMK++ C  DS+T+ IM+EAY KEGMND+++ LE E+Q+++D
Sbjct: 421 ADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMD 472

[Close]
BLAST of Sed0024001 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 324.3 bits (830), Expect = 1.6e-88
Identity = 166/382 (43.46%), Postives = 233/382 (60.99%), Query Frame = 0 

Query: 80  ERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSG 139
           +++   K    TV E+L + I+  R   A+QVFE+LR+Q +Y+P  G Y+KL+V+LG+  
Sbjct: 105 KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCK 164

Query: 140 QPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTY 199
           QP +A +LF+ MI E      E+YTAL++AY R+   D AF++L  MK+   CQPDV+TY
Sbjct: 165 QPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTY 224

Query: 200 SILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLE 259
           SILIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   +  ME  L+ ML 
Sbjct: 225 SILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLG 284

Query: 260 SSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYD 319
              C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNIL+ +YGK   Y 
Sbjct: 285 EDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYK 344

Query: 320 KMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLI 379
           KMS+VMEYM+K  + WT  TYN VI+AF  AGD K MEY F  M++E++     T C L+
Sbjct: 345 KMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLV 404

Query: 380 YGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQ 439
             YG A    K+   ++     +I  +  F+N ++ A  ++E   EM  + + M+ K  +
Sbjct: 405 RAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFK 464

Query: 440 PDSKTYSIMIEAYRKEGMNDRV 462
           PD  TY  M++AYR  GM   V
Sbjct: 465 PDKITYRTMVKAYRISGMTTHV 486

[Close]
BLAST of Sed0024001 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 308.5 bits (789), Expect = 9.2e-84
Identity = 166/455 (36.48%), Postives = 262/455 (57.58%), Query Frame = 0 

Query: 20  PTISLSSNPRLIRCAFSATKPPSSSSSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRL 79
           PTIS++  P +        +    +S  +  RH    +      R    ++ +K ++++ 
Sbjct: 43  PTISIT--PTMCSTKVPNERTEKMNSGLISTRH--QVDPKKELSRILRTDAAVKGIERKA 102

Query: 80  ERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSG 139
                   W   V EAL + I   R   AL++F +LRKQ +YEP+  TY KL  +LG   
Sbjct: 103 NSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCK 162

Query: 140 QPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTY 199
           QP +A  LFE M+ E  +PT ++YT+L++ Y ++ L+D AFS L  MK++  C+PDV+T+
Sbjct: 163 QPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTF 222

Query: 200 SILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLE 259
           ++LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G ++ ME VL  M+E
Sbjct: 223 TVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIE 282

Query: 260 SSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYD 319
                PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNILI ++GK  MY 
Sbjct: 283 DGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYK 342

Query: 320 KMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLI 379
           KM SVM++M K  F  TT TYN VIE F  AG  + M+  F +M+ + ++ ++ T+C L+
Sbjct: 343 KMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLV 402

Query: 380 YGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQ 439
             Y  AGL  K+ S ++     ++  +T F+N +I+A  +  DL  M  ++ +M+++ C+
Sbjct: 403 NAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCK 462

Query: 440 PDSKTYSIMIEAYRKEGMNDRVHCLELEKQQVIDD 475
           PD  T++ MI+ Y   G+ D V   ELEKQ +  D
Sbjct: 463 PDKITFATMIKTYTAHGIFDAVQ--ELEKQMISSD 491

[Close]
BLAST of Sed0024001 vs. TAIR 10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-40
Identity = 96/351 (27.35%), Postives = 169/351 (48.15%), Query Frame = 0 

Query: 106 LQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTA 165
           LQ L+VF  ++KQ +Y P  G Y KL+ ++G+ GQ   A  LF  M      P + +Y A
Sbjct: 114 LQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNA 173

Query: 166 LLAAYC----RNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEE 225
           L+ A+     +   ++     L+ MK +  CQP+V TY+IL++A     + + V +L+++
Sbjct: 174 LITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKD 233

Query: 226 MAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKG 285
           +    ++P+  T N V+  YGK G    ME VL  M  S+ C+PD+ T N+++  +G K 
Sbjct: 234 LDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQ 293

Query: 286 QIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYN 345
           + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  TY 
Sbjct: 294 EFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYE 353

Query: 346 NVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKY 405
            +I  +   G        FE++      +   T   ++  Y   GL+ +       A  +
Sbjct: 354 CMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAF 413

Query: 406 EIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAY 453
            +  + S Y  +  A  K +   ++  + K+M+     P+ + +   +E +
Sbjct: 414 RVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

[Close]
BLAST of Sed0024001 vs. TAIR 10
Match: AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-40
Identity = 96/351 (27.35%), Postives = 169/351 (48.15%), Query Frame = 0 

Query: 106 LQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTA 165
           LQ L+VF  ++KQ +Y P  G Y KL+ ++G+ GQ   A  LF  M      P + +Y A
Sbjct: 114 LQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNA 173

Query: 166 LLAAYC----RNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEE 225
           L+ A+     +   ++     L+ MK +  CQP+V TY+IL++A     + + V +L+++
Sbjct: 174 LITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKD 233

Query: 226 MAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKG 285
           +    ++P+  T N V+  YGK G    ME VL  M  S+ C+PD+ T N+++  +G K 
Sbjct: 234 LDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQ 293

Query: 286 QIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYN 345
           + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  TY 
Sbjct: 294 EFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYE 353

Query: 346 NVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKY 405
            +I  +   G        FE++      +   T   ++  Y   GL+ +       A  +
Sbjct: 354 CMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAF 413

Query: 406 EIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAY 453
            +  + S Y  +  A  K +   ++  + K+M+     P+ + +   +E +
Sbjct: 414 RVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

The following BLAST results are available for this feature:
BLAST of Sed0024001 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875824.19.1e-23584.76pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Benincasa ... [more]
XP_008458291.19.5e-23283.03PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic ... [more]
XP_004138596.24.7e-23183.00pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Cucumis sa... [more]
XP_022958884.12.0e-22681.62pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isofor... [more]
XP_023514865.12.0e-22681.84pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucur... [more]
BLAST of Sed0024001 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SQU67.6e-19270.04Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop... [more]
Q9FKC32.3e-8743.46Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Q9SCP45.8e-8338.71Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX... [more]
A7LN872.1e-4028.97Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4... [more]
Q9SV962.3e-3927.35Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop... [more]
BLAST of Sed0024001 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C7L94.6e-23283.03pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis ... [more]
A0A0A0K7C82.3e-23183.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1[more]
A0A6J1H6E59.9e-22781.62pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isofor... [more]
A0A5D3BUY52.2e-22688.61Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1CCD91.9e-22583.23pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Momordic... [more]
BLAST of Sed0024001 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06430.15.4e-19370.04Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G48730.11.6e-8843.46Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G53170.19.2e-8436.48Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.11.6e-4027.35Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.21.6e-4027.35Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 89..258
e-value: 3.0E-36
score: 127.4
coord: 330..476
e-value: 8.2E-26
score: 93.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 259..329
e-value: 2.0E-14
score: 55.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 197..230
e-value: 2.5E-5
score: 22.2
coord: 339..371
e-value: 2.6E-4
score: 18.9
coord: 162..196
e-value: 3.3E-7
score: 28.1
coord: 232..267
e-value: 1.7E-5
score: 22.7
coord: 304..332
e-value: 4.0E-5
score: 21.5
coord: 269..300
e-value: 0.002
score: 16.2
coord: 410..442
e-value: 3.1E-7
score: 28.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 235..260
e-value: 0.21
score: 11.9
coord: 127..154
e-value: 0.31
score: 11.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 335..384
e-value: 7.5E-4
score: 19.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 265..312
e-value: 6.7E-8
score: 32.6
coord: 160..207
e-value: 8.1E-14
score: 51.6
coord: 406..452
e-value: 8.7E-13
score: 48.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 301..335
score: 8.549871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 195..229
score: 10.775016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 230..265
score: 8.823904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..189
score: 8.604678
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 336..370
score: 9.021208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 124..158
score: 9.076014
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 406..440
score: 10.89559
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..300
score: 9.656963
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..74
NoneNo IPR availablePANTHERPTHR47932:SF4OS03G0309800 PROTEINcoord: 36..474
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 36..474

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024001.1Sed0024001.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009553 embryo sac development
biological_process GO:0009555 pollen development
biological_process GO:0048868 pollen tube development
cellular_component GO:0009507 chloroplast
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0019843 rRNA binding