Sed0023687 (gene) Chayote v1

Overview


Name	Sed0023687
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	LG11: 17010676 .. 17013282 (+)
RNA-Seq Expression	Sed0023687
Synteny	Sed0023687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGATTTCTGCGATTATTTTTTGACAGGGGTTGCCGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAGGGAGTAGGCGTTATTTGTGGAGAAGAGGGAATAAATTAGGGGTTATCAGGACCAATGCTACGAGCTTCCGGAATACCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAGTGGAAAAAAGAAGGAGATTCATTAGCTCGTTATTTAGTCAGACTTGGTGAGATGGCGGAATCTATAAAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGGCCTTATGAAAATTTAGAAATAAGATCTTTTGATCGAGGAAAGTTTCCGGAATGGAATGACTTTGACTATCGATTCATTAGTAAAAAACCTTCGCCAACTTTTGAATTGGCGAAACAAGAACTTTATGTGAGAGTGGAAGCCCCAAAAGGGGAATTGGGCATTTTTTTGATAGGGGATCAGGGTGGTTTTCCTTGGAGATGGAAAATTCGCCCACAAGGTTTTATCAATTTTCAAATTCTTCCTCAGTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGTTGATCGTTAAAATGATAATTGATACATCACAAATACAAGATATCAATTCTTTTTCGAGATTGGAATTCTTAAAAGAAGTCTATGGAATTCTATGGGTGCTTGTCCCTATTTTGGCTACCGTATTGGGAATCACAATAGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCAGGGATACAACAACGGATTGAACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAACCTGCTTCCATTGAGAGGTGATACTCGTTTATTCAAAGGCAGATGGTGCCTTTGAATGTTAACATGTATCAATTTCAATTGTGTGTATTGGTATCCTACTAGGGATGATTGTTATCTCTTGTTATATTTTTTTATCTGTTAGGGAACTGAGCATGTAGAGATCTTAGGAATATATATCCTGTTAGGTTGCCGTCATCTAGAGGCTTTGAGAGGACGTGATGTAACATGCTACCTTCTCAGGCCCGAGGATGTGATGTAGCATGCCACCCCTGTTATAGCCTAGTTTCGAGGCCTGCTAGAACAAGATTCTGATCATGGTGTAAGCCTGCCATGAGAGTTTCCTTAGCTTCAAGTGTTGGGTGTGAACAGGCTGCCACAGTAGTGTGTTGAGAGTCTCCCAGTGATTGTGGATCAGTGAACACCAATTTCGAGTCTTGTTAGGCATGTGGACCTGAACTAGTGTAGTCTGCGTAGGCTTGCATTTACGTGGTTTCAATAGCATGCGGTGTGCGGCACATGCACTAGATGCCGAGAAGAAGGCTCCCTCGGGCTAGTGTCATCAATACACCTTTCCTTGTATTTGTTTAGAGCCGAACACTTGGACCATTCCCCAAGTGTTTAGATTAGTGTAGTGAACATTGTTAGGTCGGTAGTCAGCAAACTCTCGATATTGGGAGTTATGTTGATAACTCAAGTTTGGATTAAAAATTGATCGGCTTGCATGTATTGTTAGGATGCTGGATGATGTGATGACTTGTGTATTGTACCCCGGTTGGAGATTCTTACTAAGTACCTTCGTACTCACCCTTATTTCTGTGGTTTTCCACAAAGTAACTTGGGACAGCACCGAGACGGCTAGAGAAAAGTTGTTGATCATGGGAGTCCGCTGAAATTATCATTTTCCTTATTTTCATGTCATTAATGTTCAACATGTTTGATTAGGGACTGAGTCCAACTATTTCATATTTTTATCTATTTTTAATAAAATTCTAGCCAGAGGCTCAAACTTGTTTTTAGTTATTTCTGTTTTAACTTTAATTCATTTGAAATAAAAAAATGAGTTTGGTTTTCAGTTTCCTGTTGTAACTGTATTTAATCCATGCATGGTGAGTAAGAACCGGGTCTAGGATGGTTTTAAAAGTCTTACAATCTTCTTTTCGAGTCATCCCCCTGGTTAAGCTAGCTAAAATTGTCCATAGGATTAGAGGACCCCTGAGGGTATTTGGGACTTGAGATTTTTTTCCTTTAGACCGTTCTGGGTGGTGTAGGTCAAGGACAACGTTTTTTGACCTAGCATCTAGGAGCTTGGGTTTATGTACTTTATAAACCGTCAATTAAAGACTTATTTAAGTTATTATCTTGATGTATTCTACTTGGTTTAGGCTTGAATTGAATGATTTTTAGAATTAAATAGACCTTAAGTGTAGAGATTTATTAAAAAAAAAAAAGTAATGCATGTGTACGTTAGAAGCTTGGATTTGAAAACTAAAGAAAACTAAAAAATTTAGAAGTAAAAATCAAATGCTCGAAACATTTTACACTAATAACTCAAAAAATCGAAAATTTGGAAATCACTTATTTATTATTATATTTGCAGAAGTTGGGAATGTTGCCCGCTTTACATAGAGGAGGAATAAAAAGGCCAAATGCAATGTGGAAAGAATCGAGAGATACAACATCAAGTGAATTCTAAGAGAAAACCTTAA

mRNA sequence

ATGTTTGGATTTCTGCGATTATTTTTTGACAGGGGTTGCCGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAAACTTTATGTGAGAGTGGAAGCCCCAAAAGGGGAATTGGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCAGGGATACAACAACGGATTGAACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAACCTGCTTCCATTGAGAGGCCAAATGCAATGTGGAAAGAATCGAGAGATACAACATCAAGTGAATTCTAAGAGAAAACCTTAA

Coding sequence (CDS)

ATGTTTGGATTTCTGCGATTATTTTTTGACAGGGGTTGCCGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAAACTTTATGTGAGAGTGGAAGCCCCAAAAGGGGAATTGGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCAGGGATACAACAACGGATTGAACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAACCTGCTTCCATTGAGAGGCCAAATGCAATGTGGAAAGAATCGAGAGATACAACATCAAGTGAATTCTAAGAGAAAACCTTAA

Protein sequence

MFGFLRLFFDRGCRISKTYYTKSYFFRTKLYVRVEAPKGELGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQMQCGKNREIQHQVNSKRKP

Homology

[Close]

BLAST of Sed0023687 vs. NCBI nr
Match: THG03072.1 (hypothetical protein TEA_003388 [Camellia sinensis var. sinensis])

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-20
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 27  RTKLYVRVEAPKGEL------------------------GVLVIVWLEREISAGIQQRIE 86
           + ++YVRVEAPKGEL                        GVLVIVWLEREISAGIQQRI 
Sbjct: 259 KQEIYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGITIGVLVIVWLEREISAGIQQRIG 318

Query: 87  PEYAGPLGVLQALADGTKLLFKENLLPLRG 93
           PEYAGPLG+LQALADGTKLLFKEN+LP RG
Sbjct: 319 PEYAGPLGILQALADGTKLLFKENILPSRG 348

[Close]

BLAST of Sed0023687 vs. NCBI nr
Match: QWX20371.1 (NADH-plastoquinone oxidoreductase subunit 1 [Hippophae goniocarpa] >QWX20459.1 NADH-plastoquinone oxidoreductase subunit 1 [Hippophae rhamnoides subsp. sinensis])

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQMQ 96
          +GVLVIVWLEREISAGIQQRI PEYAGPLGVLQALADGTKLLFKENLLP RG M+
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGNMR 96

[Close]

BLAST of Sed0023687 vs. NCBI nr
Match: YP_009709371.1 (NADH-plastoquinone oxidoreductase subunit 1 [Tapeinosperma multiflorum] >YP_009709456.1 NADH-plastoquinone oxidoreductase subunit 1 [Tapeinosperma netor] >QEW87016.1 NADH-plastoquinone oxidoreductase subunit 1 [Tapeinosperma multiflorum] >QEW87101.1 NADH-plastoquinone oxidoreductase subunit 1 [Tapeinosperma netor])

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQM 95
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG M
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGNM 95

[Close]

BLAST of Sed0023687 vs. NCBI nr
Match: YP_009562449.1 (NADH-plastoquinone oxidoreductase subunit 1 [Styrax suberifolius] >QAV57890.1 NADH-plastoquinone oxidoreductase subunit 1 [Styrax suberifolius] >QSL98397.1 NADH-plastoquinone oxidoreductase subunit 1 [Styrax chinensis])

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQMQ 96
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG M+
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDMR 96

[Close]

BLAST of Sed0023687 vs. NCBI nr
Match: YP_009871944.1 (NADH-plastoquinone oxidoreductase subunit 1 [Calligonum jeminaicum] >QKS33886.1 NADH-plastoquinone oxidoreductase subunit 1 [Calligonum jeminaicum] >QKW88746.1 NADH-plastoquinone oxidoreductase subunit 1 [Calligonum junceum])

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQM 95
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG M
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDM 95

[Close]

BLAST of Sed0023687 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRG 93
          +GVLVIVWLEREISAGIQQRI PEYAGPLGVLQALADGTKLLFKENLLP RG
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRG 93

[Close]

BLAST of Sed0023687 vs. ExPASy Swiss-Prot
Match: A0A390 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=13443 GN=ndhA PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRG 93
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRG 93

[Close]

BLAST of Sed0023687 vs. ExPASy Swiss-Prot
Match: Q0G9Q7 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota OX=4039 GN=ndhA PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRG 93
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRG 93

[Close]

BLAST of Sed0023687 vs. ExPASy Swiss-Prot
Match: Q1KXQ8 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=4232 GN=ndhA PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRG 93
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRG 93

[Close]

BLAST of Sed0023687 vs. ExPASy Swiss-Prot
Match: Q332S2 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa OX=4236 GN=ndhA PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRG 93
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRG 93

[Close]

BLAST of Sed0023687 vs. ExPASy TrEMBL
Match: A0A803LMN4 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 27  RTKLYVRVEAPKGELGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKEN 86
           + +LYVRVEAPK   GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADG KLLFKEN
Sbjct: 256 KQELYVRVEAPK---GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLFKEN 315

Query: 87  LLPLRG 93
           LLP RG
Sbjct: 316 LLPSRG 318

[Close]

BLAST of Sed0023687 vs. ExPASy TrEMBL
Match: A0A4S4DJL6 (Complex1_49kDa domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003388 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 27  RTKLYVRVEAPKGEL------------------------GVLVIVWLEREISAGIQQRIE 86
           + ++YVRVEAPKGEL                        GVLVIVWLEREISAGIQQRI 
Sbjct: 259 KQEIYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGITIGVLVIVWLEREISAGIQQRIG 318

Query: 87  PEYAGPLGVLQALADGTKLLFKENLLPLRG 93
           PEYAGPLG+LQALADGTKLLFKEN+LP RG
Sbjct: 319 PEYAGPLGILQALADGTKLLFKENILPSRG 348

[Close]

BLAST of Sed0023687 vs. ExPASy TrEMBL
Match: A0A7D4V7X9 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calligonum ebinuricum OX=1217313 GN=ndhA PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQM 95
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG M
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDM 95

[Close]

BLAST of Sed0023687 vs. ExPASy TrEMBL
Match: A0A191TFH0 (NADH-quinone oxidoreductase subunit H OS=Styrax grandiflorus OX=210386 GN=ndhA PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQMQ 96
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG M+
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDMR 96

[Close]

BLAST of Sed0023687 vs. ExPASy TrEMBL
Match: A0A7D4VGY4 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calligonum junceum OX=467327 GN=ndhA PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRGQM 95
          +GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENLLP RG M
Sbjct: 42 IGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDM 95

[Close]

BLAST of Sed0023687 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-20
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 42 GVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLPLRG 93
          GVLVIVWLEREISAGIQQRI PEYAGPLG+LQALADGTKLLFKENL P RG
Sbjct: 43 GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRG 93

[Close]

BLAST of Sed0023687 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLP 90
          LGV  +V  ER++ A +Q+R  P+  G  G+LQ LADG+KL+ KE + P
Sbjct: 18 LGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISP 66

[Close]

BLAST of Sed0023687 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLP 90
          LGV  +V  ER++ A +Q+R  P+  G  G+LQ LADG+KL+ KE + P
Sbjct: 18 LGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISP 66

[Close]

BLAST of Sed0023687 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 41 LGVLVIVWLEREISAGIQQRIEPEYAGPLGVLQALADGTKLLFKENLLP 90
          LGV  +V  ER++ A +Q+R  P+  G  G+LQ LADG+KL+ KE + P
Sbjct: 18 LGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISP 66

The following BLAST results are available for this feature:

BLAST of Sed0023687 vs. NCBI nr


Match Name	E-value	Identity	Description
THG03072.1	4.6e-20	64.44	hypothetical protein TEA_003388 [Camellia sinensis var. sinensis]	[more]
QWX20371.1	4.3e-18	90.91	NADH-plastoquinone oxidoreductase subunit 1 [Hippophae goniocarpa] >QWX20459.1 N...	[more]
YP_009709371.1	5.6e-18	90.74	NADH-plastoquinone oxidoreductase subunit 1 [Tapeinosperma multiflorum] >YP_0097...	[more]
YP_009562449.1	5.6e-18	89.09	NADH-plastoquinone oxidoreductase subunit 1 [Styrax suberifolius] >QAV57890.1 NA...	[more]
YP_009871944.1	5.6e-18	90.74	NADH-plastoquinone oxidoreductase subunit 1 [Calligonum jeminaicum] >QKS33886.1 ...	[more]

BLAST of Sed0023687 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD36	2.1e-20	94.23	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
A0A390	2.8e-20	92.31	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=134...	[more]
Q0G9Q7	2.8e-20	92.31	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota OX=4039...	[more]
Q1KXQ8	2.8e-20	92.31	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=...	[more]
Q332S2	2.8e-20	92.31	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa OX=423...	[more]

BLAST of Sed0023687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803LMN4	1.0e-20	84.85	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A4S4DJL6	2.2e-20	64.44	Complex1_49kDa domain-containing protein OS=Camellia sinensis var. sinensis OX=5...	[more]
A0A7D4V7X9	2.7e-18	90.74	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calligonum ebinuricum...	[more]
A0A191TFH0	2.7e-18	89.09	NADH-quinone oxidoreductase subunit H OS=Styrax grandiflorus OX=210386 GN=ndhA P...	[more]
A0A7D4VGY4	2.7e-18	90.74	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calligonum junceum OX...	[more]

BLAST of Sed0023687 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	1.7e-20	92.16	NADH dehydrogenase family protein	[more]
ATMG01120.1	2.4e-06	46.94	NADH dehydrogenase 1B	[more]
ATMG00516.1	2.4e-06	46.94	NADH dehydrogenase 1C	[more]
ATMG01275.1	2.4e-06	46.94	NADH dehydrogenase 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 42..89 e-value: 1.1E-12 score: 47.9
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 41..94
None	No IPR available	PANTHER	PTHR11432:SF3	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1	coord: 41..94
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00667	COMPLEX1_ND1_1	coord: 70..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023687.1	Sed0023687.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding