Sed0023239 (gene) Chayote v1

Overview


Name	Sed0023239
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Prolamin_like domain-containing protein
Location	LG09: 4484925 .. 4485326 (+)
RNA-Seq Expression	Sed0023239
Synteny	Sed0023239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGAAAACCAACACAGTGGTGACATTAATGGGGATTCTCCCATGGACAATAATTTTGGCAACCTTAGTTCCACCCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTACGACCATGTTTGGATATGATAAGGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTTAAATTCATGGGGAAGAGTTGTGTTGAAGCTTTTACTTTTTGGTTTGACTTTCCGGATTTGGAAGCCTTGAAACTTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCAACCTTCGAAATATTAA

mRNA sequence

ATGACAAAGAAAACCAACACAGTGGTGACATTAATGGGGATTCTCCCATGGACAATAATTTTGGCAACCTTAGTTCCACCCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTACGACCATGTTTGGATATGATAAGGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTTAAATTCATGGGGAAGAGTTGTGTTGAAGCTTTTACTTTTTGGTTTGACTTTCCGGATTTGGAAGCCTTGAAACTTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCAACCTTCGAAATATTAA

Coding sequence (CDS)

ATGACAAAGAAAACCAACACAGTGGTGACATTAATGGGGATTCTCCCATGGACAATAATTTTGGCAACCTTAGTTCCACCCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTACGACCATGTTTGGATATGATAAGGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTTAAATTCATGGGGAAGAGTTGTGTTGAAGCTTTTACTTTTTGGTTTGACTTTCCGGATTTGGAAGCCTTGAAACTTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCAACCTTCGAAATATTAA

Protein sequence

MTKKTNTVVTLMGILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKNCVRRLDAPQPSKY

Homology

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BLAST of Sed0023239 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 9.2e-44
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 14  ILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYYFN 73
           IL + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +R+AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKNCVRRLDAPQPSKY 133
           ISKKELDLNCCVFVK MGK C +AFTFW+ FP LE  + NPM  Y NC+ RLDAP P+ +
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Sed0023239 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 84/122 (68.85%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 12  MGILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYY 71
           M IL   I LA L  PS A DDYNSPIW+ WVDEDRG  LRPCLDM+++AKCQVELY YY
Sbjct: 4   MVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 63

Query: 72  FNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKNCVRRLDAPQPS 131
           FNISKKELDLNCCVFVK MGK C  AF  WF FP+ E  +LNPM  YKNCV RLDA  P+
Sbjct: 64  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 123

Query: 132 KY 134
            +
Sbjct: 124 PF 125

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BLAST of Sed0023239 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 5.6e-41
Identity = 85/135 (62.96%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MTKKTNTVVTLMGILPWTIILATLVPPSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMI 60
           M   TNTV  ++ IL   + LA LV PSMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  RNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAY 120
           ++AKCQV+LY YYFNISKKELDL CCVFVK MGK C  AF  W++FP LE  + NPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KNCVRRLDAPQPSKY 134
            NCV RL A  P+ +
Sbjct: 121 NNCVGRLQALPPTPF 135

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BLAST of Sed0023239 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 74/112 (66.07%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 4   KTNTVVTLMGILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKC 63
           KTN +  ++ IL  TI LA LV P    +DYNS IWN W+DEDR +TLRPCLD +R+AKC
Sbjct: 30  KTNAMRAML-ILLSTINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 89

Query: 64  QVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPM 116
           QVELY YYFNISK+ELDLNCCVFVK MGK C +AFTFW+ FP LE  + NPM
Sbjct: 90  QVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPM 140

[Close]

BLAST of Sed0023239 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_008880 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-34
Identity = 71/131 (54.20%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MTKKTNTVVTLMGILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRN 60
           M   T  ++ ++ +    +    LV PS   D+  S IW+ W+DEDR  TL PCL M+R+
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKN 120
            KCQVELY YYFNISKKELDL+CCV+V +MGK C  AF FWF FP LEALK NPM  Y N
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVRRLDAPQPS 132
           C +RL  P P+
Sbjct: 121 CFKRLTFPAPT 131

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BLAST of Sed0023239 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 14  ILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYYFN 73
           IL + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +R+AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKNCVRRLDAPQPSKY 133
           ISKKELDLNCCVFVK MGK C +AFTFW+ FP LE  + NPM  Y NC+ RLDAP P+ +
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Sed0023239 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.7e-41
Identity = 85/135 (62.96%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MTKKTNTVVTLMGILPWTIILATLVPPSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMI 60
           M   TNTV  ++ IL   + LA LV PSMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  RNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAY 120
           ++AKCQV+LY YYFNISKKELDL CCVFVK MGK C  AF  W++FP LE  + NPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KNCVRRLDAPQPSKY 134
            NCV RL A  P+ +
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Sed0023239 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.9e-41
Identity = 84/131 (64.12%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 1   MTKKTNTVVTLMGILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRN 60
           M  KTN  +  M IL   I LA LV  S   +DYNS IWN W+DEDR +TLRPCLD +R+
Sbjct: 1   MANKTN-AMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKN 120
           AKCQVELY YYFNISKKELDLNCCVFVK MGK C +AFTFW+ FP LE  + NPM  Y N
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CVRRLDAPQPS 132
           C  RL AP P+
Sbjct: 121 CATRLSAPPPT 130

[Close]

BLAST of Sed0023239 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-34
Identity = 71/131 (54.20%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MTKKTNTVVTLMGILPWTIILATLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRN 60
           M   T  ++ ++ +    +    LV PS   D+  S IW+ W+DEDR  TL PCL M+R+
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMAYKN 120
            KCQVELY YYFNISKKELDL+CCV+V +MGK C  AF FWF FP LEALK NPM  Y N
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVRRLDAPQPS 132
           C +RL  P P+
Sbjct: 121 CFKRLTFPAPT 131

[Close]

BLAST of Sed0023239 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-26
Identity = 59/133 (44.36%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 1   MTKKTNTVVTLMGILPWTIILA---TLVPPSMAADDYNSPIWNGWVDEDRGYTLRPCLDM 60
           M K +N+   L+ ++  ++++     LV PS+  D+  S IW+GW+D+DR   L  CL +
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  IRNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKLNPMMA 120
           +++ KCQVELY YYFN SKKE+DL+CCV+V ++G+ C  +F  WF     +ALK NPM  
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YKNCVRRLDAPQP 131
           Y NC +RL  P P
Sbjct: 121 YNNCFKRLTVPAP 133

The following BLAST results are available for this feature:

BLAST of Sed0023239 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046835.1	9.2e-44	69.17	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6578867.1	5.1e-42	68.85	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046841.1	5.6e-41	62.96	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAE8646662.1	1.0e-34	66.07	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]
KGN50979.1	5.1e-34	54.20	hypothetical protein Csa_008880 [Cucumis sativus]	[more]

BLAST of Sed0023239 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C280	4.5e-44	69.17	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZR1	2.7e-41	62.96	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	7.9e-41	64.12	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	2.5e-34	54.20	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	4.2e-26	44.36	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of Sed0023239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..105 e-value: 7.1E-5 score: 22.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023239.1	Sed0023239.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity