Sed0022881 (gene) Chayote v1

Overview
NameSed0022881
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 61032769 .. 61033904 (-)
RNA-Seq ExpressionSed0022881
SyntenySed0022881
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAAGTTCTGACTCGTCTTACCGGCCCTGCCGGTTAGTTCAATCTTGGGAAAAAACCAAATTGAACTCATTTAATGAGTTGGATTTGTATCTTGACACGTCAATGTTTGGAAATGACCATTTCTATCTAGAAGAATTTGAGGATGACGAAATATTAGTGCTCTTAAAAGTTTATGACCACAATAGGAGGAAGTTAAGCTTTGCAGGGAAGTGGTTTATAGATGTGAATGAGTCTCTTCAGATTAATTTGTCGTATTGCAATTACCATGAAGTTGATCCAGACTTTGGTTGGGCGGAGAATCTTTTGTTTTACAAGGTATATTTACTTCCTTATATAATTATCATGCCATAGTTTATGTTTTAATTATTTATTACATTTACTTTAGGAACTTTCTCCGTATGAAGAAGTTTCCTTCCTTCTTCTGGACAAGGAATTGCCTGTAAAAGAACTTGCACTATCACATGGGGACATCATATGTTACGAGGTCATTGGAAAGGAAGGTCTCCTTTCATATTTTAACTCCCTCCCTAGACCGTTGGTAAGTACTATTTTTAGTTTTATCATTTTGAAAATCAATATAATGCAGCTTCGGCCTTTTGCTAACCATGCTGCATGACATTGTGTTAGTTTGATTTGGCAGCTGAAGCTGCAATAGATGAGGCCGAAGCTGTTATAGCTGAGGCCGAAGCCGAAGGTGTTATACCTGGGGGTGAATCTGAAGCTGTTATAGCTAAGGCTGAAGCCAAAGCTGCATCAAAGTCTAAAGCATATGAAGCACTATGCATAGCTTCTGAAGCTTTATCAACAGCATCCAAAGCATTATCGAAAGCATCAGAAGCTGTGGCTAACGCAACGGAGTATCTTGCATATGACGATGCGCTTGTTGATGCTCCAAACAGCTATGAGGATAAATATGTCATTGATGCTGAGCAGGATGATTTGCAGCATATGCAAGATGACTCAAACTAACAAAAGTTGAACTGAATCAAATGAACTGTTCTTAAAGCTGATGTCCTATCTAAGTAGTTGGATTTACTGATTTGGTGAACTTTGACAGTTTAGTTGAGTTTCTCTTCGCTTGGACTTGCACTAATTTGAAGTGTATGAGTTCTATCCCTTTTCCCATCTTCCAA

mRNA sequence

AGGAGAAGTTCTGACTCGTCTTACCGGCCCTGCCGGTTAGTTCAATCTTGGGAAAAAACCAAATTGAACTCATTTAATGAGTTGGATTTGTATCTTGACACGTCAATGTTTGGAAATGACCATTTCTATCTAGAAGAATTTGAGGATGACGAAATATTAGTGCTCTTAAAAGTTTATGACCACAATAGGAGGAAGTTAAGCTTTGCAGGGAAGTGGTTTATAGATGTGAATGAGTCTCTTCAGATTAATTTGTCGTATTGCAATTACCATGAAGTTGATCCAGACTTTGGTTGGGCGGAGAATCTTTTGTTTTACAAGGAACTTTCTCCGTATGAAGAAGTTTCCTTCCTTCTTCTGGACAAGGAATTGCCTGTAAAAGAACTTGCACTATCACATGGGGACATCATATGTTACGAGGTCATTGGAAAGGAAGGTCTCCTTTCATATTTTAACTCCCTCCCTAGACCGTTGTTTGATTTGGCAGCTGAAGCTGCAATAGATGAGGCCGAAGCTGTTATAGCTGAGGCCGAAGCCGAAGGTGTTATACCTGGGGGTGAATCTGAAGCTGTTATAGCTAAGGCTGAAGCCAAAGCTGCATCAAAGTCTAAAGCATATGAAGCACTATGCATAGCTTCTGAAGCTTTATCAACAGCATCCAAAGCATTATCGAAAGCATCAGAAGCTGTGGCTAACGCAACGGAGTATCTTGCATATGACGATGCGCTTGTTGATGCTCCAAACAGCTATGAGGATAAATATGTCATTGATGCTGAGCAGGATGATTTGCAGCATATGCAAGATGACTCAAACTAACAAAAGTTGAACTGAATCAAATGAACTGTTCTTAAAGCTGATGTCCTATCTAAGTAGTTGGATTTACTGATTTGGTGAACTTTGACAGTTTAGTTGAGTTTCTCTTCGCTTGGACTTGCACTAATTTGAAGTGTATGAGTTCTATCCCTTTTCCCATCTTCCAA

Coding sequence (CDS)

ATGTTTGGAAATGACCATTTCTATCTAGAAGAATTTGAGGATGACGAAATATTAGTGCTCTTAAAAGTTTATGACCACAATAGGAGGAAGTTAAGCTTTGCAGGGAAGTGGTTTATAGATGTGAATGAGTCTCTTCAGATTAATTTGTCGTATTGCAATTACCATGAAGTTGATCCAGACTTTGGTTGGGCGGAGAATCTTTTGTTTTACAAGGAACTTTCTCCGTATGAAGAAGTTTCCTTCCTTCTTCTGGACAAGGAATTGCCTGTAAAAGAACTTGCACTATCACATGGGGACATCATATGTTACGAGGTCATTGGAAAGGAAGGTCTCCTTTCATATTTTAACTCCCTCCCTAGACCGTTGTTTGATTTGGCAGCTGAAGCTGCAATAGATGAGGCCGAAGCTGTTATAGCTGAGGCCGAAGCCGAAGGTGTTATACCTGGGGGTGAATCTGAAGCTGTTATAGCTAAGGCTGAAGCCAAAGCTGCATCAAAGTCTAAAGCATATGAAGCACTATGCATAGCTTCTGAAGCTTTATCAACAGCATCCAAAGCATTATCGAAAGCATCAGAAGCTGTGGCTAACGCAACGGAGTATCTTGCATATGACGATGCGCTTGTTGATGCTCCAAACAGCTATGAGGATAAATATGTCATTGATGCTGAGCAGGATGATTTGCAGCATATGCAAGATGACTCAAACTAA

Protein sequence

MFGNDHFYLEEFEDDEILVLLKVYDHNRRKLSFAGKWFIDVNESLQINLSYCNYHEVDPDFGWAENLLFYKELSPYEEVSFLLLDKELPVKELALSHGDIICYEVIGKEGLLSYFNSLPRPLFDLAAEAAIDEAEAVIAEAEAEGVIPGGESEAVIAKAEAKAASKSKAYEALCIASEALSTASKALSKASEAVANATEYLAYDDALVDAPNSYEDKYVIDAEQDDLQHMQDDSN
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..144
NoneNo IPR availableGENE3D3.10.20.90coord: 12..119
e-value: 1.5E-9
score: 39.9
IPR024729Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domainPFAMPF12436USP7_ICP0_bdgcoord: 13..105
e-value: 2.9E-8
score: 33.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022881.1Sed0022881.1mRNA